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Genetic resources for methane production from biomass described with the Gene Ontology.

Frontiers in microbiology

Purwantini E, Torto-Alalibo T, Lomax J, Setubal JC, Tyler BM, Mukhopadhyay B.
PMID: 25520705
Front Microbiol. 2014 Dec 03;5:634. doi: 10.3389/fmicb.2014.00634. eCollection 2014.

Methane (CH4) is a valuable fuel, constituting 70-95% of natural gas, and a potent greenhouse gas. Release of CH4 into the atmosphere contributes to climate change. Biological CH4 production or methanogenesis is mostly performed by methanogens, a group of...

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Purwantini E, Torto-Alalibo T, Lomax J, et al. Genetic resources for methane production from biomass described with the Gene Ontology. Front Microbiol. 2014;5:634doi: 10.3389/fmicb.2014.00634.
Purwantini, E., Torto-Alalibo, T., Lomax, J., Setubal, J. C., Tyler, B. M., & Mukhopadhyay, B. (2014). Genetic resources for methane production from biomass described with the Gene Ontology. Frontiers in microbiology, 5634. https://doi.org/10.3389/fmicb.2014.00634
Purwantini, Endang, et al. "Genetic resources for methane production from biomass described with the Gene Ontology." Frontiers in microbiology vol. 5 (2014): 634. doi: https://doi.org/10.3389/fmicb.2014.00634
Purwantini E, Torto-Alalibo T, Lomax J, Setubal JC, Tyler BM, Mukhopadhyay B. Genetic resources for methane production from biomass described with the Gene Ontology. Front Microbiol. 2014 Dec 03;5:634. doi: 10.3389/fmicb.2014.00634. eCollection 2014. PMID: 25520705; PMCID: PMC4253957.
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Framework Cationization by Preemptive Coordination of Open Metal Sites for Anion-Exchange Encapsulation of Nucleotides and Coenzymes.

Angewandte Chemie (International ed. in English)

Zhao X, Mao C, Luong KT, Lin Q, Zhai QG, Feng P, Bu X.
PMID: 26847038
Angew Chem Int Ed Engl. 2016 Feb 18;55(8):2768-72. doi: 10.1002/anie.201510812. Epub 2016 Feb 05.

Cationic frameworks can selectively trap anions through ion exchange, and have applications in ion chromatography and drug delivery. However, cationic frameworks are much rarer than anionic or neutral ones. Herein, we propose a concept, preemptive coordination (PC), for targeting...

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Zhao X, Mao C, Luong KT, et al. Framework Cationization by Preemptive Coordination of Open Metal Sites for Anion-Exchange Encapsulation of Nucleotides and Coenzymes. Angew Chem Int Ed Engl. 2016;55(8):2768-72doi: 10.1002/anie.201510812.
Zhao, X., Mao, C., Luong, K. T., Lin, Q., Zhai, Q. G., Feng, P., & Bu, X. (2016). Framework Cationization by Preemptive Coordination of Open Metal Sites for Anion-Exchange Encapsulation of Nucleotides and Coenzymes. Angewandte Chemie (International ed. in English), 55(8), 2768-72. https://doi.org/10.1002/anie.201510812
Zhao, Xiang, et al. "Framework Cationization by Preemptive Coordination of Open Metal Sites for Anion-Exchange Encapsulation of Nucleotides and Coenzymes." Angewandte Chemie (International ed. in English) vol. 55,8 (2016): 2768-72. doi: https://doi.org/10.1002/anie.201510812
Zhao X, Mao C, Luong KT, Lin Q, Zhai QG, Feng P, Bu X. Framework Cationization by Preemptive Coordination of Open Metal Sites for Anion-Exchange Encapsulation of Nucleotides and Coenzymes. Angew Chem Int Ed Engl. 2016 Feb 18;55(8):2768-72. doi: 10.1002/anie.201510812. Epub 2016 Feb 05. PMID: 26847038.
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Laser-induced autofluorescence for medical diagnosis.

Journal of fluorescence

Koenig K, Schneckenburger H.
PMID: 24233290
J Fluoresc. 1994 Mar;4(1):17-40. doi: 10.1007/BF01876650.

The naturally occurring autofluorescence of cells and tissues is based on biomolecules containing intrinsic fluorophores, such as porphyrins, the amino acids tryptophan and tyrosine, and the coenzymes NADH, NADPH, and flavins. Coenzymes fluoresce in the blue/green spectral region (fluorecence...

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Koenig K, Schneckenburger H. Laser-induced autofluorescence for medical diagnosis. J Fluoresc. 1994;4(1):17-40doi: 10.1007/BF01876650.
Koenig, K., & Schneckenburger, H. (1994). Laser-induced autofluorescence for medical diagnosis. Journal of fluorescence, 4(1), 17-40. https://doi.org/10.1007/BF01876650
Koenig, K, and Schneckenburger, H. "Laser-induced autofluorescence for medical diagnosis." Journal of fluorescence vol. 4,1 (1994): 17-40. doi: https://doi.org/10.1007/BF01876650
Koenig K, Schneckenburger H. Laser-induced autofluorescence for medical diagnosis. J Fluoresc. 1994 Mar;4(1):17-40. doi: 10.1007/BF01876650. PMID: 24233290.
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Production of biofuels and biochemicals by in vitro synthetic biosystems: Opportunities and challenges.

Biotechnology advances

Zhang YH.
PMID: 25447781
Biotechnol Adv. 2015 Nov 15;33(7):1467-83. doi: 10.1016/j.biotechadv.2014.10.009. Epub 2014 Oct 27.

The largest obstacle to the cost-competitive production of low-value and high-impact biofuels and biochemicals (called biocommodities) is high production costs catalyzed by microbes due to their inherent weaknesses, such as low product yield, slow reaction rate, high separation cost,...

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Zhang YH. Production of biofuels and biochemicals by in vitro synthetic biosystems: Opportunities and challenges. Biotechnol Adv. 2014;33(7):1467-83doi: 10.1016/j.biotechadv.2014.10.009.
Zhang, Y. H. (2015). Production of biofuels and biochemicals by in vitro synthetic biosystems: Opportunities and challenges. Biotechnology advances, 33(7), 1467-83. https://doi.org/10.1016/j.biotechadv.2014.10.009
Zhang, Yi-Heng Percival. "Production of biofuels and biochemicals by in vitro synthetic biosystems: Opportunities and challenges." Biotechnology advances vol. 33,7 (2015): 1467-83. doi: https://doi.org/10.1016/j.biotechadv.2014.10.009
Zhang YH. Production of biofuels and biochemicals by in vitro synthetic biosystems: Opportunities and challenges. Biotechnol Adv. 2015 Nov 15;33(7):1467-83. doi: 10.1016/j.biotechadv.2014.10.009. Epub 2014 Oct 27. PMID: 25447781.
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Mitochondrial Disease.

Current treatment options in neurology

Pons R, De Vivo DC.
PMID: 11282042
Curr Treat Options Neurol. 2001 May;3(3):271-288. doi: 10.1007/s11940-001-0008-7.

Mitochondrial diseases are disorders of energy metabolism that include defects of pyruvate metabolism, Krebs cycle, respiratory chain (RC), and fatty acid oxidation (FAO). Treatment of pyruvate metabolism, Krebs cycle, and RC disorders is, in general, disappointing. Therapeutic approaches consist...

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Pons R, De Vivo DC. Mitochondrial Disease. Curr Treat Options Neurol. 2001;3(3):271-288doi: 10.1007/s11940-001-0008-7.
Pons, R., & De Vivo, D. C. (2001). Mitochondrial Disease. Current treatment options in neurology, 3(3), 271-288. https://doi.org/10.1007/s11940-001-0008-7
Pons, Roser, and De Vivo, Darryl C.. "Mitochondrial Disease." Current treatment options in neurology vol. 3,3 (2001): 271-288. doi: https://doi.org/10.1007/s11940-001-0008-7
Pons R, De Vivo DC. Mitochondrial Disease. Curr Treat Options Neurol. 2001 May;3(3):271-288. doi: 10.1007/s11940-001-0008-7. PMID: 11282042.
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MAMMALIAN METHYLMALONYL ISOMERASE AND VITAMIN B(12) COENZYMES.

Proceedings of the National Academy of Sciences of the United States of America

Lengyel P, Mazumder R, Ochoa S.
PMID: 16590752
Proc Natl Acad Sci U S A. 1960 Oct;46(10):1312-8. doi: 10.1073/pnas.46.10.1312.

No abstract available.

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Lengyel P, Mazumder R, Ochoa S. MAMMALIAN METHYLMALONYL ISOMERASE AND VITAMIN B(12) COENZYMES. Proc Natl Acad Sci U S A. 1960;46(10):1312-8doi: 10.1073/pnas.46.10.1312.
Lengyel, P., Mazumder, R., & Ochoa, S. (1960). MAMMALIAN METHYLMALONYL ISOMERASE AND VITAMIN B(12) COENZYMES. Proceedings of the National Academy of Sciences of the United States of America, 46(10), 1312-8. https://doi.org/10.1073/pnas.46.10.1312
Lengyel, P, et al. "MAMMALIAN METHYLMALONYL ISOMERASE AND VITAMIN B(12) COENZYMES." Proceedings of the National Academy of Sciences of the United States of America vol. 46,10 (1960): 1312-8. doi: https://doi.org/10.1073/pnas.46.10.1312
Lengyel P, Mazumder R, Ochoa S. MAMMALIAN METHYLMALONYL ISOMERASE AND VITAMIN B(12) COENZYMES. Proc Natl Acad Sci U S A. 1960 Oct;46(10):1312-8. doi: 10.1073/pnas.46.10.1312. PMID: 16590752; PMCID: PMC223045.
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Biochemical and x-ray diffraction analysis of concanavalin B crystals from jack bean.

Plant physiology

Morrison R, Delozier G, Robinson L, McPherson A.
PMID: 16663793
Plant Physiol. 1984 Sep;76(1):175-83. doi: 10.1104/pp.76.1.175.

Parallel biochemical and crystallographic studies have been carried out on the protein concanavalin B from Jack Bean (Canavalis ensiformis). The studies show the protein to be a monomer of 33,000 daltons with unexceptional amino acid composition and no covalently...

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Morrison R, Delozier G, Robinson L, et al. Biochemical and x-ray diffraction analysis of concanavalin B crystals from jack bean. Plant Physiol. 1984;76(1):175-83doi: 10.1104/pp.76.1.175.
Morrison, R., Delozier, G., Robinson, L., & McPherson, A. (1984). Biochemical and x-ray diffraction analysis of concanavalin B crystals from jack bean. Plant physiology, 76(1), 175-83. https://doi.org/10.1104/pp.76.1.175
Morrison, R, et al. "Biochemical and x-ray diffraction analysis of concanavalin B crystals from jack bean." Plant physiology vol. 76,1 (1984): 175-83. doi: https://doi.org/10.1104/pp.76.1.175
Morrison R, Delozier G, Robinson L, McPherson A. Biochemical and x-ray diffraction analysis of concanavalin B crystals from jack bean. Plant Physiol. 1984 Sep;76(1):175-83. doi: 10.1104/pp.76.1.175. PMID: 16663793; PMCID: PMC1064251.
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The return of the Scarlet Pimpernel: cobalamin in inflammation II - cobalamins can both selectively promote all three nitric oxide synthases (NOS), particularly iNOS and eNOS, and, as needed, selectively inhibit iNOS and nNOS.

Journal of nutritional & environmental medicine

Wheatley C.
PMID: 18836533
J Nutr Environ Med. 2007 Sep;16(3):181-211. doi: 10.1080/10520290701791839.

The up-regulation of transcobalamins [hitherto posited as indicating a central need for cobalamin (Cbl) in inflammation], whose expression, like inducible nitric oxide synthase (iNOS), is Sp1- and interferondependent, together with increased intracellular formation of glutathionylcobalamin (GSCbl), adenosylcobalamin (AdoCbl), methylcobalamin...

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Wheatley C. The return of the Scarlet Pimpernel: cobalamin in inflammation II - cobalamins can both selectively promote all three nitric oxide synthases (NOS), particularly iNOS and eNOS, and, as needed, selectively inhibit iNOS and nNOS. J Nutr Environ Med. 2007;16(3):181-211doi: 10.1080/10520290701791839.
Wheatley, C. (2007). The return of the Scarlet Pimpernel: cobalamin in inflammation II - cobalamins can both selectively promote all three nitric oxide synthases (NOS), particularly iNOS and eNOS, and, as needed, selectively inhibit iNOS and nNOS. Journal of nutritional & environmental medicine, 16(3), 181-211. https://doi.org/10.1080/10520290701791839
Wheatley, Carmen. "The return of the Scarlet Pimpernel: cobalamin in inflammation II - cobalamins can both selectively promote all three nitric oxide synthases (NOS), particularly iNOS and eNOS, and, as needed, selectively inhibit iNOS and nNOS." Journal of nutritional & environmental medicine vol. 16,3 (2007): 181-211. doi: https://doi.org/10.1080/10520290701791839
Wheatley C. The return of the Scarlet Pimpernel: cobalamin in inflammation II - cobalamins can both selectively promote all three nitric oxide synthases (NOS), particularly iNOS and eNOS, and, as needed, selectively inhibit iNOS and nNOS. J Nutr Environ Med. 2007 Sep;16(3):181-211. doi: 10.1080/10520290701791839. PMID: 18836533; PMCID: PMC2556189.
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Horace A. Barker (1907-) pioneer of anaerobic metabolism.

Anaerobe

Chung KT.
PMID: 16887664
Anaerobe. 1999 Oct;5(5):513-7. doi: 10.1006/anae.1999.0194.

Dr Horace A. Barker was born and raised in California. He obtained his Ph.D. in chemistry from the University of California, Berkeley in 1933, and became a faculty member at the same campus in 1936. He devoted his research...

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Chung KT. Horace A. Barker (1907-) pioneer of anaerobic metabolism. Anaerobe. 1999;5(5):513-7doi: 10.1006/anae.1999.0194.
Chung, K. T. (1999). Horace A. Barker (1907-) pioneer of anaerobic metabolism. Anaerobe, 5(5), 513-7. https://doi.org/10.1006/anae.1999.0194
Chung, K T. "Horace A. Barker (1907-) pioneer of anaerobic metabolism." Anaerobe vol. 5,5 (1999): 513-7. doi: https://doi.org/10.1006/anae.1999.0194
Chung KT. Horace A. Barker (1907-) pioneer of anaerobic metabolism. Anaerobe. 1999 Oct;5(5):513-7. doi: 10.1006/anae.1999.0194. PMID: 16887664.
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Vitamin E or coenzyme Q10 administration is not fully advantageous for heart mitochondrial function in diabetic goto kakizaki rats.

Mitochondrion

Oliveira PJ, Seica R, Santos DL, Rolo AP, Sardao VA, Ferreira FM, Palmeira CM, Santos MS, Moreno AJ.
PMID: 16120365
Mitochondrion. 2004 May;3(6):337-45. doi: 10.1016/j.mito.2004.02.005.

The heart is one of the organs affected during the later stages of diabetes. Mitochondrial function has already been proposed to be affected during the course of diabetes. Nevertheless, little information is known concerning the impact of antioxidants in...

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Oliveira PJ, Seica R, Santos DL, et al. Vitamin E or coenzyme Q10 administration is not fully advantageous for heart mitochondrial function in diabetic goto kakizaki rats. Mitochondrion. 2004;3(6):337-45doi: 10.1016/j.mito.2004.02.005.
Oliveira, P. J., Seica, R., Santos, D. L., Rolo, A. P., Sardao, V. A., Ferreira, F. M., Palmeira, C. M., Santos, M. S., & Moreno, A. J. (2004). Vitamin E or coenzyme Q10 administration is not fully advantageous for heart mitochondrial function in diabetic goto kakizaki rats. Mitochondrion, 3(6), 337-45. https://doi.org/10.1016/j.mito.2004.02.005
Oliveira, Paulo J, et al. "Vitamin E or coenzyme Q10 administration is not fully advantageous for heart mitochondrial function in diabetic goto kakizaki rats." Mitochondrion vol. 3,6 (2004): 337-45. doi: https://doi.org/10.1016/j.mito.2004.02.005
Oliveira PJ, Seica R, Santos DL, Rolo AP, Sardao VA, Ferreira FM, Palmeira CM, Santos MS, Moreno AJ. Vitamin E or coenzyme Q10 administration is not fully advantageous for heart mitochondrial function in diabetic goto kakizaki rats. Mitochondrion. 2004 May;3(6):337-45. doi: 10.1016/j.mito.2004.02.005. PMID: 16120365.
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Biosynthesis of phenolic compounds in first internodes of sorghum: lignin and related products.

Plant physiology

Stafford HA.
PMID: 16656525
Plant Physiol. 1967 Mar;42(3):450-5. doi: 10.1104/pp.42.3.450.

Lignin biosynthesis in excised tissues of Sorghum vulgare variety Wheatland milo incubated in air with and without prior infiltration with H(2)O was presumably limited by H(2)O(2) production and was dependent upon an endogenous substrate, probably starch. In solution culture...

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Stafford HA. Biosynthesis of phenolic compounds in first internodes of sorghum: lignin and related products. Plant Physiol. 1967;42(3):450-5doi: 10.1104/pp.42.3.450.
Stafford, H. A. (1967). Biosynthesis of phenolic compounds in first internodes of sorghum: lignin and related products. Plant physiology, 42(3), 450-5. https://doi.org/10.1104/pp.42.3.450
Stafford, H A. "Biosynthesis of phenolic compounds in first internodes of sorghum: lignin and related products." Plant physiology vol. 42,3 (1967): 450-5. doi: https://doi.org/10.1104/pp.42.3.450
Stafford HA. Biosynthesis of phenolic compounds in first internodes of sorghum: lignin and related products. Plant Physiol. 1967 Mar;42(3):450-5. doi: 10.1104/pp.42.3.450. PMID: 16656525; PMCID: PMC1086557.
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ISOLATION AND PROPERTIES OF B(12) COENZYMES CONTAINING BENZIMIDAZOLE OR DIMETHYLBENZIMIDAZOLE.

Proceedings of the National Academy of Sciences of the United States of America

Weissbach H, Toohey J, Barker HA.
PMID: 16590408
Proc Natl Acad Sci U S A. 1959 Apr;45(4):521-5. doi: 10.1073/pnas.45.4.521.

No abstract available.

Cite
Weissbach H, Toohey J, Barker HA. ISOLATION AND PROPERTIES OF B(12) COENZYMES CONTAINING BENZIMIDAZOLE OR DIMETHYLBENZIMIDAZOLE. Proc Natl Acad Sci U S A. 1959;45(4):521-5doi: 10.1073/pnas.45.4.521.
Weissbach, H., Toohey, J., & Barker, H. A. (1959). ISOLATION AND PROPERTIES OF B(12) COENZYMES CONTAINING BENZIMIDAZOLE OR DIMETHYLBENZIMIDAZOLE. Proceedings of the National Academy of Sciences of the United States of America, 45(4), 521-5. https://doi.org/10.1073/pnas.45.4.521
Weissbach, H, et al. "ISOLATION AND PROPERTIES OF B(12) COENZYMES CONTAINING BENZIMIDAZOLE OR DIMETHYLBENZIMIDAZOLE." Proceedings of the National Academy of Sciences of the United States of America vol. 45,4 (1959): 521-5. doi: https://doi.org/10.1073/pnas.45.4.521
Weissbach H, Toohey J, Barker HA. ISOLATION AND PROPERTIES OF B(12) COENZYMES CONTAINING BENZIMIDAZOLE OR DIMETHYLBENZIMIDAZOLE. Proc Natl Acad Sci U S A. 1959 Apr;45(4):521-5. doi: 10.1073/pnas.45.4.521. PMID: 16590408; PMCID: PMC222591.
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