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The Complete Genome Sequence of Escherichia coli K-12

k-12

Plunkett G, Perna NT.
GSID: QuiXuX72_fgJ
FR Blattner, G Plunkett III, CA Bloch, NT Perna… - science, 1997 - science.org

… coli K-12 was the earliest organism to be suggested as a candidate for whole genome … one of the isoleucine-valine biosynthesis pathways in all K-12 isolates (9). Finally, almost all … It will be interesting to compare strain...

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Blattner, F. R., Plunkett III, G., Bloch, C. A., Perna, N. T., Burland, V., Riley, M., ... & Shao, Y. (1997). The complete genome sequence of Escherichia coli K-12. science, 277(5331), 1453-1462.
Blattner, Frederick R., et al. "The complete genome sequence of Escherichia coli K-12." science 277.5331 (1997): 1453-1462.
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Amino acids inhibit kynurenic acid formation via suppression of kynurenine uptake or kynurenic acid synthesis in rat brain in vitro.

SpringerPlus

Sekine A, Okamoto M, Kanatani Y, Sano M, Shibata K, Fukuwatari T.
PMID: 25674503
Springerplus. 2015 Feb 01;4:48. doi: 10.1186/s40064-015-0826-9. eCollection 2015.

The tryptophan metabolite, kynurenic acid (KYNA), is a preferential antagonist of the α7 nicotinic acetylcholine receptor at endogenous brain concentrations. Recent studies have suggested that increase of brain KYNA levels is involved in psychiatric disorders such as schizophrenia and...

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Sekine A, Okamoto M, Kanatani Y, et al. Amino acids inhibit kynurenic acid formation via suppression of kynurenine uptake or kynurenic acid synthesis in rat brain in vitro. Springerplus. 2015;4:48doi: 10.1186/s40064-015-0826-9.
Sekine, A., Okamoto, M., Kanatani, Y., Sano, M., Shibata, K., & Fukuwatari, T. (2015). Amino acids inhibit kynurenic acid formation via suppression of kynurenine uptake or kynurenic acid synthesis in rat brain in vitro. SpringerPlus, 448. https://doi.org/10.1186/s40064-015-0826-9
Sekine, Airi, et al. "Amino acids inhibit kynurenic acid formation via suppression of kynurenine uptake or kynurenic acid synthesis in rat brain in vitro." SpringerPlus vol. 4 (2015): 48. doi: https://doi.org/10.1186/s40064-015-0826-9
Sekine A, Okamoto M, Kanatani Y, Sano M, Shibata K, Fukuwatari T. Amino acids inhibit kynurenic acid formation via suppression of kynurenine uptake or kynurenic acid synthesis in rat brain in vitro. Springerplus. 2015 Feb 01;4:48. doi: 10.1186/s40064-015-0826-9. eCollection 2015. PMID: 25674503; PMCID: PMC4318830.
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Diabetes Associated Metabolomic Perturbations in NOD Mice.

Metabolomics : Official journal of the Metabolomic Society

Grapov D, Fahrmann J, Hwang J, Poudel A, Jo J, Periwal V, Fiehn O, Hara M.
PMID: 25755629
Metabolomics. 2015 Apr;11(2):425-437. doi: 10.1007/s11306-014-0706-2.

Non-obese diabetic (NOD) mice are a widely-used model oftype1 diabetes (T1D). However, not all animals develop overt diabetes. This study examined the circulating metabolomic profiles of NOD mice progressing or not progressing to T1D. Total beta-cell mass was quantified...

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Grapov D, Fahrmann J, Hwang J, et al. Diabetes Associated Metabolomic Perturbations in NOD Mice. Metabolomics. 2015;11(2):425-437doi: 10.1007/s11306-014-0706-2.
Grapov, D., Fahrmann, J., Hwang, J., Poudel, A., Jo, J., Periwal, V., Fiehn, O., & Hara, M. (2015). Diabetes Associated Metabolomic Perturbations in NOD Mice. Metabolomics : Official journal of the Metabolomic Society, 11(2), 425-437. https://doi.org/10.1007/s11306-014-0706-2
Grapov, Dmitry, et al. "Diabetes Associated Metabolomic Perturbations in NOD Mice." Metabolomics : Official journal of the Metabolomic Society vol. 11,2 (2015): 425-437. doi: https://doi.org/10.1007/s11306-014-0706-2
Grapov D, Fahrmann J, Hwang J, Poudel A, Jo J, Periwal V, Fiehn O, Hara M. Diabetes Associated Metabolomic Perturbations in NOD Mice. Metabolomics. 2015 Apr;11(2):425-437. doi: 10.1007/s11306-014-0706-2. PMID: 25755629; PMCID: PMC4351755.
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The influence of pioglitazone on the plasma amino acid profile in patients with nonalcoholic steatohepatitis (NASH).

Hepatology international

Kakazu E, Kondo Y, Ninomiya M, Kimura O, Nagasaki F, Ueno Y, Shimosegawa T.
PMID: 26201790
Hepatol Int. 2013 Jun;7(2):577-85. doi: 10.1007/s12072-012-9395-y. Epub 2012 Aug 14.

BACKGROUND AND AIMS: The peroxisome proliferator-activated receptor-γ (PPAR-γ) ligand, piglitazone, enhances the degradation of branched-chain amino acids (BCAAs) in adipose tissue. However, it remains unknown whether pioglitazone influences the plasma amino acids (AA) profile in patients with nonalcoholic steatohepatitis...

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Kakazu E, Kondo Y, Ninomiya M, et al. The influence of pioglitazone on the plasma amino acid profile in patients with nonalcoholic steatohepatitis (NASH). Hepatol Int. 2012;7(2):577-85doi: 10.1007/s12072-012-9395-y.
Kakazu, E., Kondo, Y., Ninomiya, M., Kimura, O., Nagasaki, F., Ueno, Y., & Shimosegawa, T. (2013). The influence of pioglitazone on the plasma amino acid profile in patients with nonalcoholic steatohepatitis (NASH). Hepatology international, 7(2), 577-85. https://doi.org/10.1007/s12072-012-9395-y
Kakazu, Eiji, et al. "The influence of pioglitazone on the plasma amino acid profile in patients with nonalcoholic steatohepatitis (NASH)." Hepatology international vol. 7,2 (2013): 577-85. doi: https://doi.org/10.1007/s12072-012-9395-y
Kakazu E, Kondo Y, Ninomiya M, Kimura O, Nagasaki F, Ueno Y, Shimosegawa T. The influence of pioglitazone on the plasma amino acid profile in patients with nonalcoholic steatohepatitis (NASH). Hepatol Int. 2013 Jun;7(2):577-85. doi: 10.1007/s12072-012-9395-y. Epub 2012 Aug 14. PMID: 26201790.
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Analysis on the metabolite composition of serum samples from patients with papillary thyroid carcinoma using nuclear magnetic resonance.

International journal of clinical and experimental medicine

Zhao WX, Wang B, Zhang LY, Yan SY, Yang YH.
PMID: 26770396
Int J Clin Exp Med. 2015 Oct 15;8(10):18013-22. eCollection 2015.

OBJECTIVE: Analysis of the metabolic differences among the papillary thyroid carcinoma (group T) patients, benign thyroid tumor patients (group B) and healthy controls (group H) by nuclear magnetic resonance hydrogen spectrum.METHODS: collect twenty serum specimens each from group T,...

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Zhao WX, Wang B, Zhang LY, et al. Analysis on the metabolite composition of serum samples from patients with papillary thyroid carcinoma using nuclear magnetic resonance. Int J Clin Exp Med. 2015;8(10):18013-22
Zhao, W. X., Wang, B., Zhang, L. Y., Yan, S. Y., & Yang, Y. H. (2015). Analysis on the metabolite composition of serum samples from patients with papillary thyroid carcinoma using nuclear magnetic resonance. International journal of clinical and experimental medicine, 8(10), 18013-22.
Zhao, Wen-Xin, et al. "Analysis on the metabolite composition of serum samples from patients with papillary thyroid carcinoma using nuclear magnetic resonance." International journal of clinical and experimental medicine vol. 8,10 (2015): 18013-22.
Zhao WX, Wang B, Zhang LY, Yan SY, Yang YH. Analysis on the metabolite composition of serum samples from patients with papillary thyroid carcinoma using nuclear magnetic resonance. Int J Clin Exp Med. 2015 Oct 15;8(10):18013-22. eCollection 2015. PMID: 26770396; PMCID: PMC4694296.
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HLA-Bw4-I-80 Isoform Differentially Influences Clinical Outcome As Compared to HLA-Bw4-T-80 and HLA-A-Bw4 Isoforms in Rituximab or Dinutuximab-Based Cancer Immunotherapy.

Frontiers in immunology

Erbe AK, Wang W, Reville PK, Carmichael L, Kim K, Mendonca EA, Song Y, Hank JA, London WB, Naranjo A, Hong F, Hogarty MD, Maris JM, Park JR, Ozkaynak MF, Miller JS, Gilman AL, Kahl B, Yu AL, Sondel PM.
PMID: 28659916
Front Immunol. 2017 Jun 12;8:675. doi: 10.3389/fimmu.2017.00675. eCollection 2017.

Killer-cell immunoglobulin-like receptors (KIRs) are a family of glycoproteins expressed primarily on natural killer cells that can regulate their function. Inhibitory KIRs recognize MHC class I molecules (KIR-ligands) as ligands. We have reported associations of KIRs and KIR-ligands for...

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Erbe AK, Wang W, Reville PK, et al. HLA-Bw4-I-80 Isoform Differentially Influences Clinical Outcome As Compared to HLA-Bw4-T-80 and HLA-A-Bw4 Isoforms in Rituximab or Dinutuximab-Based Cancer Immunotherapy. Front Immunol. 2017;8:675doi: 10.3389/fimmu.2017.00675.
Erbe, A. K., Wang, W., Reville, P. K., Carmichael, L., Kim, K., Mendonca, E. A., Song, Y., Hank, J. A., London, W. B., Naranjo, A., Hong, F., Hogarty, M. D., Maris, J. M., Park, J. R., Ozkaynak, M. F., Miller, J. S., Gilman, A. L., Kahl, B., Yu, A. L., & Sondel, P. M. (2017). HLA-Bw4-I-80 Isoform Differentially Influences Clinical Outcome As Compared to HLA-Bw4-T-80 and HLA-A-Bw4 Isoforms in Rituximab or Dinutuximab-Based Cancer Immunotherapy. Frontiers in immunology, 8675. https://doi.org/10.3389/fimmu.2017.00675
Erbe, Amy K, et al. "HLA-Bw4-I-80 Isoform Differentially Influences Clinical Outcome As Compared to HLA-Bw4-T-80 and HLA-A-Bw4 Isoforms in Rituximab or Dinutuximab-Based Cancer Immunotherapy." Frontiers in immunology vol. 8 (2017): 675. doi: https://doi.org/10.3389/fimmu.2017.00675
Erbe AK, Wang W, Reville PK, Carmichael L, Kim K, Mendonca EA, Song Y, Hank JA, London WB, Naranjo A, Hong F, Hogarty MD, Maris JM, Park JR, Ozkaynak MF, Miller JS, Gilman AL, Kahl B, Yu AL, Sondel PM. HLA-Bw4-I-80 Isoform Differentially Influences Clinical Outcome As Compared to HLA-Bw4-T-80 and HLA-A-Bw4 Isoforms in Rituximab or Dinutuximab-Based Cancer Immunotherapy. Front Immunol. 2017 Jun 12;8:675. doi: 10.3389/fimmu.2017.00675. eCollection 2017. PMID: 28659916; PMCID: PMC5466980.
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Biosynthesis and Regulation of the Branched-Chain Amino Acids†.

EcoSal Plus

Salmon KA, Yang CR, Hatfield GW.
PMID: 26443574
EcoSal Plus. 2006 Jan;2(1). doi: 10.1128/ecosalplus.3.6.1.5.

This review focuses on more recent studies concerning the systems biology of branched-chain amino acid biosynthesis, that is, the pathway-specific and global metabolic and genetic regulatory networks that enable the cell to adjust branched-chain amino acid synthesis rates to...

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Salmon KA, Yang CR, Hatfield GW. Biosynthesis and Regulation of the Branched-Chain Amino Acids†. EcoSal Plus. 2006;2(1)doi: 10.1128/ecosalplus.3.6.1.5.
Salmon, K. A., Yang, C. R., & Hatfield, G. W. (2006). Biosynthesis and Regulation of the Branched-Chain Amino Acids†. EcoSal Plus, 2(1), . https://doi.org/10.1128/ecosalplus.3.6.1.5
Salmon, Kirsty A, et al. "Biosynthesis and Regulation of the Branched-Chain Amino Acids†." EcoSal Plus vol. 2,1 (2006). doi: https://doi.org/10.1128/ecosalplus.3.6.1.5
Salmon KA, Yang CR, Hatfield GW. Biosynthesis and Regulation of the Branched-Chain Amino Acids†. EcoSal Plus. 2006 Jan;2(1). doi: 10.1128/ecosalplus.3.6.1.5. PMID: 26443574.
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Acute supplementation of valine reduces fatigue during swimming exercise in rats.

Bioscience, biotechnology, and biochemistry

Tsuda Y, Iwasawa K, Yamaguchi M.
PMID: 29475409
Biosci Biotechnol Biochem. 2018 May;82(5):856-861. doi: 10.1080/09168451.2018.1438168. Epub 2018 Feb 23.

We investigated the respective effects of the acute supplementation of valine, leucine, and isoleucine on metabolism-related markers by administering a swimming exercise test to rats. As a behavioral analysis, we evaluated the effect of valine and that of leucine...

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Tsuda Y, Iwasawa K, Yamaguchi M. Acute supplementation of valine reduces fatigue during swimming exercise in rats. Biosci Biotechnol Biochem. 2018;82(5):856-861doi: 10.1080/09168451.2018.1438168.
Tsuda, Y., Iwasawa, K., & Yamaguchi, M. (2018). Acute supplementation of valine reduces fatigue during swimming exercise in rats. Bioscience, biotechnology, and biochemistry, 82(5), 856-861. https://doi.org/10.1080/09168451.2018.1438168
Tsuda, Yuichi, et al. "Acute supplementation of valine reduces fatigue during swimming exercise in rats." Bioscience, biotechnology, and biochemistry vol. 82,5 (2018): 856-861. doi: https://doi.org/10.1080/09168451.2018.1438168
Tsuda Y, Iwasawa K, Yamaguchi M. Acute supplementation of valine reduces fatigue during swimming exercise in rats. Biosci Biotechnol Biochem. 2018 May;82(5):856-861. doi: 10.1080/09168451.2018.1438168. Epub 2018 Feb 23. PMID: 29475409.
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N-Aryl Isoleucine Derivatives as Angiotensin II AT2 Receptor Ligands.

ChemistryOpen

Behrends M, Wallinder C, Wieckowska A, Guimond MO, Hallberg A, Gallo-Payet N, Larhed M.
PMID: 24808993
ChemistryOpen. 2014 Apr;3(2):65-75. doi: 10.1002/open.201300040. Epub 2014 Mar 13.

A novel series of ligands for the recombinant human AT2 receptor has been synthesized utilizing a fast and efficient palladium-catalyzed procedure for aminocarbonylation as the key reaction. Molybdenum hexacarbonyl [Mo(CO)6] was employed as the carbon monoxide source, and controlled...

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Behrends M, Wallinder C, Wieckowska A, et al. N-Aryl Isoleucine Derivatives as Angiotensin II AT2 Receptor Ligands. ChemistryOpen. 2014;3(2):65-75doi: 10.1002/open.201300040.
Behrends, M., Wallinder, C., Wieckowska, A., Guimond, M. O., Hallberg, A., Gallo-Payet, N., & Larhed, M. (2014). N-Aryl Isoleucine Derivatives as Angiotensin II AT2 Receptor Ligands. ChemistryOpen, 3(2), 65-75. https://doi.org/10.1002/open.201300040
Behrends, Malte, et al. "N-Aryl Isoleucine Derivatives as Angiotensin II AT2 Receptor Ligands." ChemistryOpen vol. 3,2 (2014): 65-75. doi: https://doi.org/10.1002/open.201300040
Behrends M, Wallinder C, Wieckowska A, Guimond MO, Hallberg A, Gallo-Payet N, Larhed M. N-Aryl Isoleucine Derivatives as Angiotensin II AT2 Receptor Ligands. ChemistryOpen. 2014 Apr;3(2):65-75. doi: 10.1002/open.201300040. Epub 2014 Mar 13. PMID: 24808993; PMCID: PMC4000169.
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Prions in variably protease-sensitive prionopathy: an update.

Pathogens (Basel, Switzerland)

Zou WQ, Gambetti P, Xiao X, Yuan J, Langeveld J, Pirisinu L.
PMID: 25437202
Pathogens. 2013 Jul 05;2(3):457-71. doi: 10.3390/pathogens2030457.

Human prion diseases, including sporadic, familial, and acquired forms such as Creutzfeldt-Jakob disease (CJD), are caused by prions in which an abnormal prion protein (PrPSc) derived from its normal cellular isoform (PrPC) is the only known component. The recently-identified...

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Zou WQ, Gambetti P, Xiao X, et al. Prions in variably protease-sensitive prionopathy: an update. Pathogens. 2013;2(3):457-71doi: 10.3390/pathogens2030457.
Zou, W. Q., Gambetti, P., Xiao, X., Yuan, J., Langeveld, J., & Pirisinu, L. (2013). Prions in variably protease-sensitive prionopathy: an update. Pathogens (Basel, Switzerland), 2(3), 457-71. https://doi.org/10.3390/pathogens2030457
Zou, Wen-Quan, et al. "Prions in variably protease-sensitive prionopathy: an update." Pathogens (Basel, Switzerland) vol. 2,3 (2013): 457-71. doi: https://doi.org/10.3390/pathogens2030457
Zou WQ, Gambetti P, Xiao X, Yuan J, Langeveld J, Pirisinu L. Prions in variably protease-sensitive prionopathy: an update. Pathogens. 2013 Jul 05;2(3):457-71. doi: 10.3390/pathogens2030457. PMID: 25437202; PMCID: PMC4235694.
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Lysine metabolism in a barley mutant resistant to S(2-aminoethyl)cysteine.

Planta

Bright SW, Featherstone LC, Miflin BJ.
PMID: 24318338
Planta. 1979 Oct;146(5):629-33. doi: 10.1007/BF00388843.

Lysine and S(2-aminoethyl)cysteine (AEC) metabolism were investigated in normal barley (Hordeum vulgare L. cv. Bomi) and a hemozygous recessive AEC-resistant mutant (R906). Feedback regulation of lysine and threonine synthesis from [(14)C] acetate was unimpaired in plants of the mutant...

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Bright SW, Featherstone LC, Miflin BJ. Lysine metabolism in a barley mutant resistant to S(2-aminoethyl)cysteine. Planta. 1979;146(5):629-33doi: 10.1007/BF00388843.
Bright, S. W., Featherstone, L. C., & Miflin, B. J. (1979). Lysine metabolism in a barley mutant resistant to S(2-aminoethyl)cysteine. Planta, 146(5), 629-33. https://doi.org/10.1007/BF00388843
Bright, S W, et al. "Lysine metabolism in a barley mutant resistant to S(2-aminoethyl)cysteine." Planta vol. 146,5 (1979): 629-33. doi: https://doi.org/10.1007/BF00388843
Bright SW, Featherstone LC, Miflin BJ. Lysine metabolism in a barley mutant resistant to S(2-aminoethyl)cysteine. Planta. 1979 Oct;146(5):629-33. doi: 10.1007/BF00388843. PMID: 24318338.
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Purification and Characterization of Bacteriocin Produced by Lactobacillus brevis UN Isolated from Dhulliachar: a Traditional Food Product of North East India.

Indian journal of microbiology

Gautam N, Sharma N, Ahlawat OP.
PMID: 25320420
Indian J Microbiol. 2014 Jun;54(2):185-9. doi: 10.1007/s12088-013-0427-7. Epub 2013 Oct 01.

A bacteriocin producing strain Lactobacillus brevis UN isolated from Dulliachar-a salted pickle and identified by biochemical and molecular methods. L. brevis UN was found to produce bacteriocin with broad spectrum activity against spoilage causing/food borne pathogens viz. L. monocytogenes,...

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Gautam N, Sharma N, Ahlawat OP. Purification and Characterization of Bacteriocin Produced by Lactobacillus brevis UN Isolated from Dhulliachar: a Traditional Food Product of North East India. Indian J Microbiol. 2013;54(2):185-9doi: 10.1007/s12088-013-0427-7.
Gautam, N., Sharma, N., & Ahlawat, O. P. (2014). Purification and Characterization of Bacteriocin Produced by Lactobacillus brevis UN Isolated from Dhulliachar: a Traditional Food Product of North East India. Indian journal of microbiology, 54(2), 185-9. https://doi.org/10.1007/s12088-013-0427-7
Gautam, Neha, et al. "Purification and Characterization of Bacteriocin Produced by Lactobacillus brevis UN Isolated from Dhulliachar: a Traditional Food Product of North East India." Indian journal of microbiology vol. 54,2 (2014): 185-9. doi: https://doi.org/10.1007/s12088-013-0427-7
Gautam N, Sharma N, Ahlawat OP. Purification and Characterization of Bacteriocin Produced by Lactobacillus brevis UN Isolated from Dhulliachar: a Traditional Food Product of North East India. Indian J Microbiol. 2014 Jun;54(2):185-9. doi: 10.1007/s12088-013-0427-7. Epub 2013 Oct 01. PMID: 25320420; PMCID: PMC4188502.
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Showing 1 to 12 of 1122 entries