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Prevalence of diarrheagenic Escherichia coli virulence genes in the feces of slaughtered cattle, chickens, and pigs in Burkina Faso.

MicrobiologyOpen

Kagambèga A, Martikainen O, Siitonen A, Traoré AS, Barro N, Haukka K.
PMID: 23170227
Microbiologyopen. 2012 Sep;1(3):276-84. doi: 10.1002/mbo3.30. Epub 2012 Jul 22.

We investigated the prevalence of the virulence genes specific for five major pathogroups of diarrheagenic Escherichia coli (DEC) in primary cultures from feces of animals slaughtered for human consumption in Burkina Faso. For the study, 704 feces samples were...

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Kagambèga A, Martikainen O, Siitonen A, et al. Prevalence of diarrheagenic Escherichia coli virulence genes in the feces of slaughtered cattle, chickens, and pigs in Burkina Faso. Microbiologyopen. 2012;1(3):276-84doi: 10.1002/mbo3.30.
Kagambèga, A., Martikainen, O., Siitonen, A., Traoré, A. S., Barro, N., & Haukka, K. (2012). Prevalence of diarrheagenic Escherichia coli virulence genes in the feces of slaughtered cattle, chickens, and pigs in Burkina Faso. MicrobiologyOpen, 1(3), 276-84. https://doi.org/10.1002/mbo3.30
Kagambèga, Assèta, et al. "Prevalence of diarrheagenic Escherichia coli virulence genes in the feces of slaughtered cattle, chickens, and pigs in Burkina Faso." MicrobiologyOpen vol. 1,3 (2012): 276-84. doi: https://doi.org/10.1002/mbo3.30
Kagambèga A, Martikainen O, Siitonen A, Traoré AS, Barro N, Haukka K. Prevalence of diarrheagenic Escherichia coli virulence genes in the feces of slaughtered cattle, chickens, and pigs in Burkina Faso. Microbiologyopen. 2012 Sep;1(3):276-84. doi: 10.1002/mbo3.30. Epub 2012 Jul 22. PMID: 23170227; PMCID: PMC3496972.
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An activator for pyruvoyl-dependent l-aspartate α-decarboxylase is conserved in a small group of the γ-proteobacteria including Escherichia coli.

MicrobiologyOpen

Nozaki S, Webb ME, Niki H.
PMID: 23170229
Microbiologyopen. 2012 Sep;1(3):298-310. doi: 10.1002/mbo3.34. Epub 2012 Aug 14.

In bacteria, β-alanine is formed via the action of l-aspartate α-decarboxylase (PanD) which is one of the small class of pyruvoyl-dependent enzymes. The pyruvoyl cofactor in these enzymes is formed via the intramolecular rearrangement of a serine residue in...

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Nozaki S, Webb ME, Niki H. An activator for pyruvoyl-dependent l-aspartate α-decarboxylase is conserved in a small group of the γ-proteobacteria including Escherichia coli. Microbiologyopen. 2012;1(3):298-310doi: 10.1002/mbo3.34.
Nozaki, S., Webb, M. E., & Niki, H. (2012). An activator for pyruvoyl-dependent l-aspartate α-decarboxylase is conserved in a small group of the γ-proteobacteria including Escherichia coli. MicrobiologyOpen, 1(3), 298-310. https://doi.org/10.1002/mbo3.34
Nozaki, Shingo, et al. "An activator for pyruvoyl-dependent l-aspartate α-decarboxylase is conserved in a small group of the γ-proteobacteria including Escherichia coli." MicrobiologyOpen vol. 1,3 (2012): 298-310. doi: https://doi.org/10.1002/mbo3.34
Nozaki S, Webb ME, Niki H. An activator for pyruvoyl-dependent l-aspartate α-decarboxylase is conserved in a small group of the γ-proteobacteria including Escherichia coli. Microbiologyopen. 2012 Sep;1(3):298-310. doi: 10.1002/mbo3.34. Epub 2012 Aug 14. PMID: 23170229; PMCID: PMC3496974.
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Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance against Pseudomonas syringae pv. tomato in Arabidopsis.

MicrobiologyOpen

Djavaheri M, Mercado-Blanco J, Versluis C, Meyer JM, Loon LC, Bakker PA.
PMID: 23170230
Microbiologyopen. 2012 Sep;1(3):311-25. doi: 10.1002/mbo3.32. Epub 2012 Aug 24.

The plant growth-promoting rhizobacterium Pseudomonas fluorescens WCS374r produces several iron-regulated metabolites, including the fluorescent siderophore pseudobactin (Psb374), salicylic acid (SA), and pseudomonine (Psm), a siderophore that contains a SA moiety. After purification of Psb374 from culture supernatant of WCS374r,...

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Djavaheri M, Mercado-Blanco J, Versluis C, et al. Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance against Pseudomonas syringae pv. tomato in Arabidopsis. Microbiologyopen. 2012;1(3):311-25doi: 10.1002/mbo3.32.
Djavaheri, M., Mercado-Blanco, J., Versluis, C., Meyer, J. M., Loon, L. C., & Bakker, P. A. (2012). Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance against Pseudomonas syringae pv. tomato in Arabidopsis. MicrobiologyOpen, 1(3), 311-25. https://doi.org/10.1002/mbo3.32
Djavaheri, Mohammad, et al. "Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance against Pseudomonas syringae pv. tomato in Arabidopsis." MicrobiologyOpen vol. 1,3 (2012): 311-25. doi: https://doi.org/10.1002/mbo3.32
Djavaheri M, Mercado-Blanco J, Versluis C, Meyer JM, Loon LC, Bakker PA. Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance against Pseudomonas syringae pv. tomato in Arabidopsis. Microbiologyopen. 2012 Sep;1(3):311-25. doi: 10.1002/mbo3.32. Epub 2012 Aug 24. PMID: 23170230; PMCID: PMC3496975.
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The soluble pyocins S2 and S4 from Pseudomonas aeruginosa bind to the same FpvAI receptor.

MicrobiologyOpen

Elfarash A, Wei Q, Cornelis P.
PMID: 23170226
Microbiologyopen. 2012 Sep;1(3):268-75. doi: 10.1002/mbo3.27. Epub 2012 Jun 22.

Soluble (S-type) pyocins are Pseudomonas aeruginosa bacteriocins that kill nonimmune P. aeruginosa cells by gaining entry via a specific receptor, which, in the case of pyocin S2, is the siderophore pyoverdine receptor FpvAI, and in the case of pyocin...

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Elfarash A, Wei Q, Cornelis P. The soluble pyocins S2 and S4 from Pseudomonas aeruginosa bind to the same FpvAI receptor. Microbiologyopen. 2012;1(3):268-75doi: 10.1002/mbo3.27.
Elfarash, A., Wei, Q., & Cornelis, P. (2012). The soluble pyocins S2 and S4 from Pseudomonas aeruginosa bind to the same FpvAI receptor. MicrobiologyOpen, 1(3), 268-75. https://doi.org/10.1002/mbo3.27
Elfarash, Ameer, et al. "The soluble pyocins S2 and S4 from Pseudomonas aeruginosa bind to the same FpvAI receptor." MicrobiologyOpen vol. 1,3 (2012): 268-75. doi: https://doi.org/10.1002/mbo3.27
Elfarash A, Wei Q, Cornelis P. The soluble pyocins S2 and S4 from Pseudomonas aeruginosa bind to the same FpvAI receptor. Microbiologyopen. 2012 Sep;1(3):268-75. doi: 10.1002/mbo3.27. Epub 2012 Jun 22. PMID: 23170226; PMCID: PMC3496971.
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Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome.

MicrobiologyOpen

Tagami K, Nanamiya H, Kazo Y, Maehashi M, Suzuki S, Namba E, Hoshiya M, Hanai R, Tozawa Y, Morimoto T, Ogasawara N, Kageyama Y, Ara K, Ozaki K, Yoshida M, Kuroiwa H, Kuroiwa T, Ohashi Y, Kawamura F.
PMID: 22950019
Microbiologyopen. 2012 Jun;1(2):115-34. doi: 10.1002/mbo3.16.

To elucidate the biological functions of small (p)ppGpp synthetases YjbM and YwaC of Bacillus subtilis, we constructed RIK1059 and RIK1066 strains carrying isopropyl-β-D-thiogalactopyranoside (IPTG) inducible yjbM and ywaC genes, respectively, in the ΔrelA ΔyjbM ΔywaC triple mutant background. While...

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Tagami K, Nanamiya H, Kazo Y, et al. Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome. Microbiologyopen. 2012;1(2):115-34doi: 10.1002/mbo3.16.
Tagami, K., Nanamiya, H., Kazo, Y., Maehashi, M., Suzuki, S., Namba, E., Hoshiya, M., Hanai, R., Tozawa, Y., Morimoto, T., Ogasawara, N., Kageyama, Y., Ara, K., Ozaki, K., Yoshida, M., Kuroiwa, H., Kuroiwa, T., Ohashi, Y., & Kawamura, F. (2012). Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome. MicrobiologyOpen, 1(2), 115-34. https://doi.org/10.1002/mbo3.16
Tagami, Kazumi, et al. "Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome." MicrobiologyOpen vol. 1,2 (2012): 115-34. doi: https://doi.org/10.1002/mbo3.16
Tagami K, Nanamiya H, Kazo Y, Maehashi M, Suzuki S, Namba E, Hoshiya M, Hanai R, Tozawa Y, Morimoto T, Ogasawara N, Kageyama Y, Ara K, Ozaki K, Yoshida M, Kuroiwa H, Kuroiwa T, Ohashi Y, Kawamura F. Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome. Microbiologyopen. 2012 Jun;1(2):115-34. doi: 10.1002/mbo3.16. PMID: 22950019; PMCID: PMC3426417.
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Importance of the latex-clearing protein (Lcp) for poly(cis-1,4-isoprene) rubber cleavage in Streptomyces sp. K30.

MicrobiologyOpen

Yikmis M, Steinbüchel A.
PMID: 22950008
Microbiologyopen. 2012 Mar;1(1):13-24. doi: 10.1002/mbo3.3.

Streptomyces sp. strain K30 induces the formation of an extracellular Lcp (latex-clearing protein) during poly(cis-1,4-isoprene) degradation. To investigate the function of this enzyme in Streptomyces sp. strain K30, the lcp gene was disrupted. This was the first time that...

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Yikmis M, Steinbüchel A. Importance of the latex-clearing protein (Lcp) for poly(cis-1,4-isoprene) rubber cleavage in Streptomyces sp. K30. Microbiologyopen. 2012;1(1):13-24doi: 10.1002/mbo3.3.
Yikmis, M., & Steinbüchel, A. (2012). Importance of the latex-clearing protein (Lcp) for poly(cis-1,4-isoprene) rubber cleavage in Streptomyces sp. K30. MicrobiologyOpen, 1(1), 13-24. https://doi.org/10.1002/mbo3.3
Yikmis, Meral, and Steinbüchel, Alexander. "Importance of the latex-clearing protein (Lcp) for poly(cis-1,4-isoprene) rubber cleavage in Streptomyces sp. K30." MicrobiologyOpen vol. 1,1 (2012): 13-24. doi: https://doi.org/10.1002/mbo3.3
Yikmis M, Steinbüchel A. Importance of the latex-clearing protein (Lcp) for poly(cis-1,4-isoprene) rubber cleavage in Streptomyces sp. K30. Microbiologyopen. 2012 Mar;1(1):13-24. doi: 10.1002/mbo3.3. PMID: 22950008; PMCID: PMC3426405.
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Debaryomyces hansenii strains differ in their production of flavor compounds in a cheese-surface model.

MicrobiologyOpen

Gori K, Sørensen LM, Petersen MA, Jespersen L, Arneborg N.
PMID: 22950022
Microbiologyopen. 2012 Jun;1(2):161-8. doi: 10.1002/mbo3.11.

Flavor production among 12 strains of Debaryomyces hansenii when grown on a simple cheese model mimicking a cheese surface was investigated by dynamic headspace sampling followed by gas chromatography-mass spectrometry. The present study confirmed that D. hansenii possess the...

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Gori K, Sørensen LM, Petersen MA, et al. Debaryomyces hansenii strains differ in their production of flavor compounds in a cheese-surface model. Microbiologyopen. 2012;1(2):161-8doi: 10.1002/mbo3.11.
Gori, K., Sørensen, L. M., Petersen, M. A., Jespersen, L., & Arneborg, N. (2012). Debaryomyces hansenii strains differ in their production of flavor compounds in a cheese-surface model. MicrobiologyOpen, 1(2), 161-8. https://doi.org/10.1002/mbo3.11
Gori, Klaus, et al. "Debaryomyces hansenii strains differ in their production of flavor compounds in a cheese-surface model." MicrobiologyOpen vol. 1,2 (2012): 161-8. doi: https://doi.org/10.1002/mbo3.11
Gori K, Sørensen LM, Petersen MA, Jespersen L, Arneborg N. Debaryomyces hansenii strains differ in their production of flavor compounds in a cheese-surface model. Microbiologyopen. 2012 Jun;1(2):161-8. doi: 10.1002/mbo3.11. PMID: 22950022; PMCID: PMC3426413.
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Adaptation to potassium starvation of wild-type and K(+)-transport mutant (trk1,2) of Saccharomyces cerevisiae: 2-dimensional gel electrophoresis-based proteomic approach.

MicrobiologyOpen

Gelis S, Curto M, Valledor L, González A, Ariño J, Jorrín J, Ramos J.
PMID: 22950024
Microbiologyopen. 2012 Jun;1(2):182-93. doi: 10.1002/mbo3.23.

Saccharomyces cerevisiae wild-type (BY4741) and the corresponding mutant lacking the plasma membrane main potassium uptake systems (trk1,trk2) were used to analyze the consequences of K(+) starvation following a proteomic approach. In order to trigger high-affinity mode of potassium transport,...

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Gelis S, Curto M, Valledor L, et al. Adaptation to potassium starvation of wild-type and K(+)-transport mutant (trk1,2) of Saccharomyces cerevisiae: 2-dimensional gel electrophoresis-based proteomic approach. Microbiologyopen. 2012;1(2):182-93doi: 10.1002/mbo3.23.
Gelis, S., Curto, M., Valledor, L., González, A., Ariño, J., Jorrín, J., & Ramos, J. (2012). Adaptation to potassium starvation of wild-type and K(+)-transport mutant (trk1,2) of Saccharomyces cerevisiae: 2-dimensional gel electrophoresis-based proteomic approach. MicrobiologyOpen, 1(2), 182-93. https://doi.org/10.1002/mbo3.23
Gelis, Samuel, et al. "Adaptation to potassium starvation of wild-type and K(+)-transport mutant (trk1,2) of Saccharomyces cerevisiae: 2-dimensional gel electrophoresis-based proteomic approach." MicrobiologyOpen vol. 1,2 (2012): 182-93. doi: https://doi.org/10.1002/mbo3.23
Gelis S, Curto M, Valledor L, González A, Ariño J, Jorrín J, Ramos J. Adaptation to potassium starvation of wild-type and K(+)-transport mutant (trk1,2) of Saccharomyces cerevisiae: 2-dimensional gel electrophoresis-based proteomic approach. Microbiologyopen. 2012 Jun;1(2):182-93. doi: 10.1002/mbo3.23. PMID: 22950024; PMCID: PMC3426419.
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Characterizing the microbiota in gastrointestinal tract segments of Rhabdophis subminiatus: Dynamic changes and functional predictions.

MicrobiologyOpen

Tang W, Zhu G, Shi Q, Yang S, Ma T, Mishra SK, Wen A, Xu H, Wang Q, Jiang Y, Wu J, Xie M, Yao Y, Li D.
PMID: 30848054
Microbiologyopen. 2019 Mar 07;e789. doi: 10.1002/mbo3.789. Epub 2019 Mar 07.

The gut microbiota helps the host to absorb nutrients and generate immune responses that can affect host behavior, development, reproduction, and overall health. However, in most of the previous studies, microbiota was sampled mainly using feces and intestinal contents...

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Tang W, Zhu G, Shi Q, et al. Characterizing the microbiota in gastrointestinal tract segments of Rhabdophis subminiatus: Dynamic changes and functional predictions. Microbiologyopen. 2019;e789doi: 10.1002/mbo3.789.
Tang, W., Zhu, G., Shi, Q., Yang, S., Ma, T., Mishra, S. K., Wen, A., Xu, H., Wang, Q., Jiang, Y., Wu, J., Xie, M., Yao, Y., & Li, D. (2019). Characterizing the microbiota in gastrointestinal tract segments of Rhabdophis subminiatus: Dynamic changes and functional predictions. MicrobiologyOpen, e789. https://doi.org/10.1002/mbo3.789
Tang, Wenjiao, et al. "Characterizing the microbiota in gastrointestinal tract segments of Rhabdophis subminiatus: Dynamic changes and functional predictions." MicrobiologyOpen vol. (2019): e789. doi: https://doi.org/10.1002/mbo3.789
Tang W, Zhu G, Shi Q, Yang S, Ma T, Mishra SK, Wen A, Xu H, Wang Q, Jiang Y, Wu J, Xie M, Yao Y, Li D. Characterizing the microbiota in gastrointestinal tract segments of Rhabdophis subminiatus: Dynamic changes and functional predictions. Microbiologyopen. 2019 Mar 07;e789. doi: 10.1002/mbo3.789. Epub 2019 Mar 07. PMID: 30848054; PMCID: PMC6612554.
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A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology.

MicrobiologyOpen

Bleuven C, Dubé AK, Nguyen GQ, Gagnon-Arsenault I, Martin H, Landry CR.
PMID: 30569485
Microbiologyopen. 2018 Dec 19;e773. doi: 10.1002/mbo3.773. Epub 2018 Dec 19.

While the use of barcoded collections of laboratory microorganisms and the development of barcode-based cell tracking are rapidly developing in genetics and genomics research, tools to track natural populations are still lacking. The yeast Saccharomyces paradoxus is an emergent...

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Bleuven C, Dubé AK, Nguyen GQ, et al. A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology. Microbiologyopen. 2018;e773doi: 10.1002/mbo3.773.
Bleuven, C., Dubé, A. K., Nguyen, G. Q., Gagnon-Arsenault, I., Martin, H., & Landry, C. R. (2018). A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology. MicrobiologyOpen, e773. https://doi.org/10.1002/mbo3.773
Bleuven, Clara, et al. "A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology." MicrobiologyOpen vol. (2018): e773. doi: https://doi.org/10.1002/mbo3.773
Bleuven C, Dubé AK, Nguyen GQ, Gagnon-Arsenault I, Martin H, Landry CR. A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology. Microbiologyopen. 2018 Dec 19;e773. doi: 10.1002/mbo3.773. Epub 2018 Dec 19. PMID: 30569485; PMCID: PMC6612553.
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Hyperinvasiveness of Listeria monocytogenes sequence type 1 is independent of lineage I-specific genes encoding internalin-like proteins.

MicrobiologyOpen

Gözel B, Monney C, Aguilar-Bultet L, Rupp S, Frey J, Oevermann A.
PMID: 30656829
Microbiologyopen. 2019 Jan 17;e790. doi: 10.1002/mbo3.790. Epub 2019 Jan 17.

Listeriosis is a severe disease caused by the opportunistic bacterial pathogen Listeria monocytogenes (L. monocytogenes). Previous studies indicate that of the four phylogenetical lineages known, lineage I strains are significantly more prevalent in clinical infections than in the environment....

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Gözel B, Monney C, Aguilar-Bultet L, et al. Hyperinvasiveness of Listeria monocytogenes sequence type 1 is independent of lineage I-specific genes encoding internalin-like proteins. Microbiologyopen. 2019;e790doi: 10.1002/mbo3.790.
Gözel, B., Monney, C., Aguilar-Bultet, L., Rupp, S., Frey, J., & Oevermann, A. (2019). Hyperinvasiveness of Listeria monocytogenes sequence type 1 is independent of lineage I-specific genes encoding internalin-like proteins. MicrobiologyOpen, e790. https://doi.org/10.1002/mbo3.790
Gözel, Bulent, et al. "Hyperinvasiveness of Listeria monocytogenes sequence type 1 is independent of lineage I-specific genes encoding internalin-like proteins." MicrobiologyOpen vol. (2019): e790. doi: https://doi.org/10.1002/mbo3.790
Gözel B, Monney C, Aguilar-Bultet L, Rupp S, Frey J, Oevermann A. Hyperinvasiveness of Listeria monocytogenes sequence type 1 is independent of lineage I-specific genes encoding internalin-like proteins. Microbiologyopen. 2019 Jan 17;e790. doi: 10.1002/mbo3.790. Epub 2019 Jan 17. PMID: 30656829; PMCID: PMC6612545.
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NADPH-related processes studied with a SoxR-based biosensor in Escherichia coli.

MicrobiologyOpen

Spielmann A, Baumgart M, Bott M.
PMID: 30585443
Microbiologyopen. 2018 Dec 25;e785. doi: 10.1002/mbo3.785. Epub 2018 Dec 25.

NADPH plays a crucial role in cellular metabolism for biosynthesis and oxidative stress responses. We previously developed the genetically encoded NADPH biosensor pSenSox based on the transcriptional regulator SoxR of Escherichia coli, its target promoter P

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Spielmann A, Baumgart M, Bott M. NADPH-related processes studied with a SoxR-based biosensor in Escherichia coli. Microbiologyopen. 2018;e785doi: 10.1002/mbo3.785.
Spielmann, A., Baumgart, M., & Bott, M. (2018). NADPH-related processes studied with a SoxR-based biosensor in Escherichia coli. MicrobiologyOpen, e785. https://doi.org/10.1002/mbo3.785
Spielmann, Alina, et al. "NADPH-related processes studied with a SoxR-based biosensor in Escherichia coli." MicrobiologyOpen vol. (2018): e785. doi: https://doi.org/10.1002/mbo3.785
Spielmann A, Baumgart M, Bott M. NADPH-related processes studied with a SoxR-based biosensor in Escherichia coli. Microbiologyopen. 2018 Dec 25;e785. doi: 10.1002/mbo3.785. Epub 2018 Dec 25. PMID: 30585443; PMCID: PMC6612552.
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