Science and "broadening participation"
[No authors listed]
GSID: KckYfDaHumIJ
R Kodner, A Murray, M Collins… - AGU Fall Meeting …, 2021 - ui.adsabs.harvard.edu
Abstract The Living Snow Project (LSP) is a community-enabled science (aka citizen science) program that engages the outdoor recreation community in generating data on snow microbiome communities across mountain ranges. The LSPs efforts initially focused on the Cascade Mountains...
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Kodner, R., Murray, A., Collins, M., & Khan, A. (2021, December). The Living Snow Project: citizen science program to generate large spatial and temporal datasets of snow microbiomes. In AGU Fall Meeting Abstracts (Vol. 2021, pp. ED55D-0315).
Kodner, Robin, et al. "The Living Snow Project: citizen science program to generate large spatial and temporal datasets of snow microbiomes." AGU Fall Meeting Abstracts. Vol. 2021. 2021.
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STEM and diversify
Johnson KVA.
GSID: yX_zlL02MAIJ
KVA Johnson, PWJ Burnet - Gut microbes, 2016 - Taylor & Francis
… In comparison, many of the diseases afflicting industrialized populations may stem from depleted microbiome diversity and the lack of certain microbial species due to over-reliance on …
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Johnson, K. V. A., & Burnet, P. W. (2016). Microbiome: should we diversify from diversity?. Gut microbes, 7(6), 455-458.
Johnson, Katerina V-A., and Philip WJ Burnet. "Microbiome: should we diversify from diversity?." Gut microbes 7.6 (2016): 455-458.
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Louis Stokes Alliances for Minority Participation AND Program Evaluation
[No authors listed]
GSID: Uqh_kxJm6C8J
O Hernández-Gómez… - … ECOLOGY OF GIANT …, 2017 - search.proquest.com
There is a need to adequately prioritize recommendations derived from multiple disciplines into conservation management plans. Extensive genetic and microbiome datasets have been generated for multiple species, and prioritizing recommendations from these studies can be challenging for managers. I...
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Hernández-Gómez, O., & Williams, R. N. (2017). microbiome-based recommendations into current hellbender (Cryptobranchus alleganiensis) conservation management. CUTANEOUS MICROBIAL ECOLOGY OF GIANT SALAMANDERS: IMPLICATIONS FOR CONSERVATION AND MANAGEMENT, 103.
Hernández-Gómez, O., and R. N. Williams. "microbiome-based recommendations into current hellbender (Cryptobranchus alleganiensis) conservation management." CUTANEOUS MICROBIAL ECOLOGY OF GIANT SALAMANDERS: IMPLICATIONS FOR CONSERVATION AND MANAGEMENT (2017): 103.
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pipeline programs
Neely CJ, Tully BJ.
GSID: gA5QrfL-eToJ
CJ Neely, ED Graham, BJ Tully - bioRxiv, 2019 - biorxiv.org
As the importance of microbiome research continues to become more prevalent and essential to understanding a wide variety of ecosystems (eg, marine, built, host-associated …
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Neely, C. J., Graham, E. D., & Tully, B. J. (2019). MetaSanity: An integrated, customizable microbial genome evaluation and annotation pipeline. bioRxiv, 789024.
Neely, Christopher J., Elaina D. Graham, and Benjamin J. Tully. "MetaSanity: An integrated, customizable microbial genome evaluation and annotation pipeline." bioRxiv (2019): 789024.
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education interventions
Goldman MD.
GSID: 4VnRrkBZuDIJ
JN Brenton, MD Goldman - Multiple sclerosis and related disorders, 2016 - Elsevier
Background Modifiable risk factors for multiple sclerosis (MS), including obesity and the gut microbiome, have been studied and have been found to be potentially relevant. Given this …
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Brenton, J. N., & Goldman, M. D. (2016). A study of dietary modification: Perceptions and attitudes of patients with multiple sclerosis. Multiple sclerosis and related disorders, 8, 54-57.
Brenton, J. Nicholas, and Myla D. Goldman. "A study of dietary modification: Perceptions and attitudes of patients with multiple sclerosis." Multiple sclerosis and related disorders 8 (2016): 54-57.
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Computer and Information Science and Engineering Minority-Serving Institutions Research Expansion Program AND Program Evaluation
Foxx AJ, Hariharan J, Kozik AJ.
GSID: aCE7VjEm6DkJ
AJ Foxx, KP Franco Meléndez, J Hariharan, AJ Kozik… - Msystems, 2021 - Am Soc Microbiol
This article proposes ways to improve inclusion and training in microbiome science and advocates for resource expansion to improve scientific capacity across institutions and countries. Specifically, we urge mentors, collaborators, and decision-makers to commit to inclusive and accessible research...
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Foxx, A. J., Franco Meléndez, K. P., Hariharan, J., Kozik, A. J., Wattenburger, C. J., Godoy-Vitorino, F., & Rivers, A. R. (2021). Advancing equity and inclusion in microbiome research and training. Msystems, 6(5), e01151-21.
Foxx, Alicia J., et al. "Advancing equity and inclusion in microbiome research and training." Msystems 6.5 (2021): e01151-21.
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diversity
Alhusen J, Kelsey C.
GSID: f5fH-r-7hlYJ
C Kelsey, C Dreisbach, J Alhusen… - Developmental …, 2019 - Wiley Online Library
Incorporating information regarding the gut microbiota into psychobiological research promises to shed new light on how individual differences in brain and cognitive …
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Kelsey, C., Dreisbach, C., Alhusen, J., & Grossmann, T. (2019). A primer on investigating the role of the microbiome in brain and cognitive development. Developmental psychobiology, 61(3), 341-349.
Kelsey, Caroline, et al. "A primer on investigating the role of the microbiome in brain and cognitive development." Developmental psychobiology 61.3 (2019): 341-349.
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EPSCoR Research Infrastructure Improvement Program: Bridging EPSCoR Communities AND Program Evaluation
Doak TG, Michaels SD.
GSID: HvkRXERdV5IJ
TG Doak, CA Stewart, SD Michaels - 2018 - scholarworks.iu.edu
4) Disseminating tools for genome assembly and analysis in forms useable by biologists. 5) Providing long-term archival storage for genome biologists. Emphasis is placed on genome, transcriptome, and microbiome assembly at the technically challenging end of the spectrum of...
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Doak, T. G., Stewart, C. A., & Michaels, S. D. (2018). ABI Sustaining: The National Center for Genome Analysis Support 2018 Annual Report Stewart.
Doak, Thomas G., Craig A. Stewart, and Scott D. Michaels. ABI Sustaining: The National Center for Genome Analysis Support 2018 Annual Report Stewart. 2018.
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STEM and males
Chakladar J, Li WT.
GSID: QI-LsRr4hNwJ
J Chakladar, SZ Kuo, G Castaneda, WT Li… - Cancers, 2020 - mdpi.com
… Furthermore, we found that the increased prevalence and poorer prognosis of PAAD in males and smokers are linked to the presence of potentially cancer-promoting or immune-…
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Chakladar, J., Kuo, S. Z., Castaneda, G., Li, W. T., Gnanasekar, A., Yu, M. A., ... & Ongkeko, W. M. (2020). The pancreatic microbiome is associated with carcinogenesis and worse prognosis in males and smokers. Cancers, 12(9), 2672.
Chakladar, Jaideep, et al. "The pancreatic microbiome is associated with carcinogenesis and worse prognosis in males and smokers." Cancers 12.9 (2020): 2672.
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Pre-school
Korpela K, Salonen A, Kekkonen RA.
GSID: I921c7t_zHoJ
K Korpela, A Salonen, LJ Virta, RA Kekkonen… - Nature …, 2016 - nature.com
Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children | Nature Communications … Here we utilize this unique database and pyrosequencing of fecal microbiomes to investigate the short- and long-term effects of antibiotics on pre-school children’s...
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Korpela, K., Salonen, A., Virta, L. J., Kekkonen, R. A., Forslund, K., Bork, P., & De Vos, W. M. (2016). Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children. Nature communications, 7(1), 1-8.
Korpela, Katri, et al. "Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children." Nature communications 7.1 (2016): 1-8.
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Alliances for Graduate Education and the Professoriate AND Program Evaluation
Jo YK, Jochum MD, Pierson EA.
GSID: OlNiCIL3gvQJ
MD Jochum, KL McWilliams, EA Pierson, YK Jo - Plos one, 2019 - journals.plos.org
Host-mediated microbiome engineering (HMME) is a strategy that utilizes the host phenotype to indirectly select microbiomes though cyclic differentiation and propagation. In this experiment, the host phenotype of delayed onset of seedling water deficit stress symptoms was used to...
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Jochum, M. D., McWilliams, K. L., Pierson, E. A., & Jo, Y. K. (2019). Host-mediated microbiome engineering (HMME) of drought tolerance in the wheat rhizosphere. Plos one, 14(12), e0225933.
Jochum, Michael D., et al. "Host-mediated microbiome engineering (HMME) of drought tolerance in the wheat rhizosphere." Plos one 14.12 (2019): e0225933.
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Science and underrepresented
Ederveen THA.
GSID: Mmm7pzKnZ-oJ
PLJM Zeeuwen, THA Ederveen… - Journal of Allergy and …, 2017 - jacionline.org
All experimental procedures were performed as described in this article’s Online Repository at www. jacionline. org. We analyzed the skin microbiota of the lower leg, which is typically a …
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Zeeuwen, P. L., Ederveen, T. H., van der Krieken, D. A., Niehues, H., Boekhorst, J., Kezic, S., ... & Schalkwijk, J. (2017). Gram-positive anaerobe cocci are underrepresented in the microbiome of filaggrin-deficient human skin. Journal of Allergy and Clinical Immunology, 139(4), 1368-1371.
Zeeuwen, Patrick LJM, et al. "Gram-positive anaerobe cocci are underrepresented in the microbiome of filaggrin-deficient human skin." Journal of Allergy and Clinical Immunology 139.4 (2017): 1368-1371.
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