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T cell up-regulation of CD127 is associated with reductions in the homeostatic set point of the peripheral T cell pool during malnourishment.

Biochemistry and biophysics reports

Murphy S, Patrick K, Thoner T, Edwards RW, Gubbels Bupp MR.
PMID: 28955903
Biochem Biophys Rep. 2016 Jun 08;7:164-172. doi: 10.1016/j.bbrep.2016.06.006. eCollection 2016 Sep.

The following study was undertaken to better understand the mechanisms that relate the homeostatic set point of the peripheral T cell population to energy availability in mice. We report that the total number of peripheral naïve and memory CD4+...

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Murphy S, Patrick K, Thoner T, et al. T cell up-regulation of CD127 is associated with reductions in the homeostatic set point of the peripheral T cell pool during malnourishment. Biochem Biophys Rep. 2016;7:164-172doi: 10.1016/j.bbrep.2016.06.006.
Murphy, S., Patrick, K., Thoner, T., Edwards, R. W., & Gubbels Bupp, M. R. (2016). T cell up-regulation of CD127 is associated with reductions in the homeostatic set point of the peripheral T cell pool during malnourishment. Biochemistry and biophysics reports, 7164-172. https://doi.org/10.1016/j.bbrep.2016.06.006
Murphy, Sarah, et al. "T cell up-regulation of CD127 is associated with reductions in the homeostatic set point of the peripheral T cell pool during malnourishment." Biochemistry and biophysics reports vol. 7 (2016): 164-172. doi: https://doi.org/10.1016/j.bbrep.2016.06.006
Murphy S, Patrick K, Thoner T, Edwards RW, Gubbels Bupp MR. T cell up-regulation of CD127 is associated with reductions in the homeostatic set point of the peripheral T cell pool during malnourishment. Biochem Biophys Rep. 2016 Jun 08;7:164-172. doi: 10.1016/j.bbrep.2016.06.006. eCollection 2016 Sep. PMID: 28955903; PMCID: PMC5613352.
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Differing roles of autophagy in HIV-associated neurocognitive impairment and encephalitis with implications for morphine co-exposure.

Frontiers in microbiology

Dever SM, Rodriguez M, Lapierre J, Costin BN, El-Hage N.
PMID: 26217309
Front Microbiol. 2015 Jul 06;6:653. doi: 10.3389/fmicb.2015.00653. eCollection 2015.

We investigated the role of autophagy in HIV-infected subjects with neurocognitive impairment (NCI) ± HIV encephalitis (HIVE), many of which had a history of polysubstance abuse/dependence, using post-mortem brain tissues to determine whether differences in autophagy related factors may...

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Dever SM, Rodriguez M, Lapierre J, et al. Differing roles of autophagy in HIV-associated neurocognitive impairment and encephalitis with implications for morphine co-exposure. Front Microbiol. 2015;6:653doi: 10.3389/fmicb.2015.00653.
Dever, S. M., Rodriguez, M., Lapierre, J., Costin, B. N., & El-Hage, N. (2015). Differing roles of autophagy in HIV-associated neurocognitive impairment and encephalitis with implications for morphine co-exposure. Frontiers in microbiology, 6653. https://doi.org/10.3389/fmicb.2015.00653
Dever, Seth M, et al. "Differing roles of autophagy in HIV-associated neurocognitive impairment and encephalitis with implications for morphine co-exposure." Frontiers in microbiology vol. 6 (2015): 653. doi: https://doi.org/10.3389/fmicb.2015.00653
Dever SM, Rodriguez M, Lapierre J, Costin BN, El-Hage N. Differing roles of autophagy in HIV-associated neurocognitive impairment and encephalitis with implications for morphine co-exposure. Front Microbiol. 2015 Jul 06;6:653. doi: 10.3389/fmicb.2015.00653. eCollection 2015. PMID: 26217309; PMCID: PMC4491626.
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[Neratinib + Valproate] exposure permanently reduces ERBB1 and RAS expression in 4T1 mammary tumors and enhances M1 macrophage infiltration.

Oncotarget

Booth L, Roberts JL, Rais R, Kirkwood J, Avogadri-Connors F, Cutler RE, Lalani AS, Poklepovic A, Dent P.
PMID: 29464055
Oncotarget. 2017 Dec 26;9(5):6062-6074. doi: 10.18632/oncotarget.23681. eCollection 2018 Jan 19.

The irreversible ERBB1/2/4 inhibitor neratinib has been shown

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Booth L, Roberts JL, Rais R, et al. [Neratinib + Valproate] exposure permanently reduces ERBB1 and RAS expression in 4T1 mammary tumors and enhances M1 macrophage infiltration. Oncotarget. 2017;9(5):6062-6074doi: 10.18632/oncotarget.23681.
Booth, L., Roberts, J. L., Rais, R., Kirkwood, J., Avogadri-Connors, F., Cutler, R. E., Lalani, A. S., Poklepovic, A., & Dent, P. (2018). [Neratinib + Valproate] exposure permanently reduces ERBB1 and RAS expression in 4T1 mammary tumors and enhances M1 macrophage infiltration. Oncotarget, 9(5), 6062-6074. https://doi.org/10.18632/oncotarget.23681
Booth, Laurence, et al. "[Neratinib + Valproate] exposure permanently reduces ERBB1 and RAS expression in 4T1 mammary tumors and enhances M1 macrophage infiltration." Oncotarget vol. 9,5 (2018): 6062-6074. doi: https://doi.org/10.18632/oncotarget.23681
Booth L, Roberts JL, Rais R, Kirkwood J, Avogadri-Connors F, Cutler RE, Lalani AS, Poklepovic A, Dent P. [Neratinib + Valproate] exposure permanently reduces ERBB1 and RAS expression in 4T1 mammary tumors and enhances M1 macrophage infiltration. Oncotarget. 2017 Dec 26;9(5):6062-6074. doi: 10.18632/oncotarget.23681. eCollection 2018 Jan 19. PMID: 29464055; PMCID: PMC5814195.
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Chronic adolescent stress causes sustained impairment of cognitive flexibility and hippocampal synaptic strength in female rats.

Neurobiology of stress

Hyer MM, Shaw GA, Goswamee P, Dyer SK, Burns CM, Soriano E, Sanchez CS, Rowson SA, McQuiston AR, Neigh GN.
PMID: 33614865
Neurobiol Stress. 2021 Feb 03;14:100303. doi: 10.1016/j.ynstr.2021.100303. eCollection 2021 May.

Females that experience chronic stress during development, particularly adolescence, are the most vulnerable group to stress-induced disease. While considerable attention has been devoted to stress-induced manifestation of anxiety, depression, and PTSD, evidence indicates that a history of chronic stress...

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Hyer MM, Shaw GA, Goswamee P, et al. Chronic adolescent stress causes sustained impairment of cognitive flexibility and hippocampal synaptic strength in female rats. Neurobiol Stress. 2021;14:100303doi: 10.1016/j.ynstr.2021.100303.
Hyer, M. M., Shaw, G. A., Goswamee, P., Dyer, S. K., Burns, C. M., Soriano, E., Sanchez, C. S., Rowson, S. A., McQuiston, A. R., & Neigh, G. N. (2021). Chronic adolescent stress causes sustained impairment of cognitive flexibility and hippocampal synaptic strength in female rats. Neurobiology of stress, 14100303. https://doi.org/10.1016/j.ynstr.2021.100303
Hyer, M M, et al. "Chronic adolescent stress causes sustained impairment of cognitive flexibility and hippocampal synaptic strength in female rats." Neurobiology of stress vol. 14 (2021): 100303. doi: https://doi.org/10.1016/j.ynstr.2021.100303
Hyer MM, Shaw GA, Goswamee P, Dyer SK, Burns CM, Soriano E, Sanchez CS, Rowson SA, McQuiston AR, Neigh GN. Chronic adolescent stress causes sustained impairment of cognitive flexibility and hippocampal synaptic strength in female rats. Neurobiol Stress. 2021 Feb 03;14:100303. doi: 10.1016/j.ynstr.2021.100303. eCollection 2021 May. PMID: 33614865; PMCID: PMC7876631.
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[No title available]

mBio

Adcox HE, Hatke AL, Andersen SE, Gupta S, Otto NB, Weber MM, Marconi RT, Carlyon JA.
PMID: 34340535
mBio. 2021 Aug 31;12(4):e0181621. doi: 10.1128/mBio.01816-21. Epub 2021 Aug 03.

Orientia tsutsugamushi is the etiologic agent of scrub typhus, the deadliest of all diseases caused by obligate intracellular bacteria. Nucleomodulins, bacterial effectors that dysregulate eukaryotic transcription, are being increasingly recognized as key virulence factors. How they translocate into the...

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Adcox HE, Hatke AL, Andersen SE, et al. . mBio. 2021;12(4):e0181621doi: 10.1128/mBio.01816-21.
Adcox, H. E., Hatke, A. L., Andersen, S. E., Gupta, S., Otto, N. B., Weber, M. M., Marconi, R. T., & Carlyon, J. A. (2021). . mBio, 12(4), e0181621. https://doi.org/10.1128/mBio.01816-21
Adcox, Haley E, et al. "." mBio vol. 12,4 (2021): e0181621. doi: https://doi.org/10.1128/mBio.01816-21
Adcox HE, Hatke AL, Andersen SE, Gupta S, Otto NB, Weber MM, Marconi RT, Carlyon JA. . mBio. 2021 Aug 31;12(4):e0181621. doi: 10.1128/mBio.01816-21. Epub 2021 Aug 03. PMID: 34340535; PMCID: PMC8406279.
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Caspases Switch off the m.

mBio

Zhang K, Zhang Y, Maharjan Y, Sugiokto FG, Wan J, Li R.
PMID: 34425696
mBio. 2021 Aug 31;12(4):e0170621. doi: 10.1128/mBio.01706-21. Epub 2021 Aug 24.

The methylation of RNA at the N6 position of adenosine (m

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Zhang K, Zhang Y, Maharjan Y, et al. Caspases Switch off the m. mBio. 2021;12(4):e0170621doi: 10.1128/mBio.01706-21.
Zhang, K., Zhang, Y., Maharjan, Y., Sugiokto, F. G., Wan, J., & Li, R. (2021). Caspases Switch off the m. mBio, 12(4), e0170621. https://doi.org/10.1128/mBio.01706-21
Zhang, Kun, et al. "Caspases Switch off the m." mBio vol. 12,4 (2021): e0170621. doi: https://doi.org/10.1128/mBio.01706-21
Zhang K, Zhang Y, Maharjan Y, Sugiokto FG, Wan J, Li R. Caspases Switch off the m. mBio. 2021 Aug 31;12(4):e0170621. doi: 10.1128/mBio.01706-21. Epub 2021 Aug 24. PMID: 34425696; PMCID: PMC8406275.
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Coronavirus Disease 2019 Vaccination Is Associated With Reduced Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Death in Liver Transplant Recipients.

Gastroenterology

John BV, Deng Y, Khakoo NS, Taddei TH, Kaplan DE, Dahman B.
PMID: 34758352
Gastroenterology. 2021 Nov 07; doi: 10.1053/j.gastro.2021.11.001. Epub 2021 Nov 07.

No abstract available.

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John BV, Deng Y, Khakoo NS, et al. Coronavirus Disease 2019 Vaccination Is Associated With Reduced Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Death in Liver Transplant Recipients. Gastroenterology. 2021;doi: 10.1053/j.gastro.2021.11.001.
John, B. V., Deng, Y., Khakoo, N. S., Taddei, T. H., Kaplan, D. E., & Dahman, B. (2021). Coronavirus Disease 2019 Vaccination Is Associated With Reduced Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Death in Liver Transplant Recipients. Gastroenterology, . https://doi.org/10.1053/j.gastro.2021.11.001
John, Binu V, et al. "Coronavirus Disease 2019 Vaccination Is Associated With Reduced Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Death in Liver Transplant Recipients." Gastroenterology vol. (2021). doi: https://doi.org/10.1053/j.gastro.2021.11.001
John BV, Deng Y, Khakoo NS, Taddei TH, Kaplan DE, Dahman B. Coronavirus Disease 2019 Vaccination Is Associated With Reduced Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Death in Liver Transplant Recipients. Gastroenterology. 2021 Nov 07; doi: 10.1053/j.gastro.2021.11.001. Epub 2021 Nov 07. PMID: 34758352; PMCID: PMC8572555.
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CRISPR/Cas9 deletion of ORMDLs reveals complexity in sphingolipid metabolism.

Journal of lipid research

Green CD, Weigel C, Oyeniran C, James BN, Davis D, Mahawar U, Newton J, Wattenberg BW, Maceyka M, Spiegel S.
PMID: 33939982
J Lipid Res. 2021;62:100082. doi: 10.1016/j.jlr.2021.100082. Epub 2021 Apr 30.

The serine palmitoyltransferase (SPT) complex catalyzes the rate-limiting step in the de novo biosynthesis of ceramides, the precursors of sphingolipids. The mammalian ORMDL isoforms (ORMDL1-3) are negative regulators of SPT. However, the roles of individual ORMDL isoforms are unclear....

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Green CD, Weigel C, Oyeniran C, et al. CRISPR/Cas9 deletion of ORMDLs reveals complexity in sphingolipid metabolism. J Lipid Res. 2021;62:100082doi: 10.1016/j.jlr.2021.100082.
Green, C. D., Weigel, C., Oyeniran, C., James, B. N., Davis, D., Mahawar, U., Newton, J., Wattenberg, B. W., Maceyka, M., & Spiegel, S. (2021). CRISPR/Cas9 deletion of ORMDLs reveals complexity in sphingolipid metabolism. Journal of lipid research, 62100082. https://doi.org/10.1016/j.jlr.2021.100082
Green, Christopher D, et al. "CRISPR/Cas9 deletion of ORMDLs reveals complexity in sphingolipid metabolism." Journal of lipid research vol. 62 (2021): 100082. doi: https://doi.org/10.1016/j.jlr.2021.100082
Green CD, Weigel C, Oyeniran C, James BN, Davis D, Mahawar U, Newton J, Wattenberg BW, Maceyka M, Spiegel S. CRISPR/Cas9 deletion of ORMDLs reveals complexity in sphingolipid metabolism. J Lipid Res. 2021;62:100082. doi: 10.1016/j.jlr.2021.100082. Epub 2021 Apr 30. PMID: 33939982; PMCID: PMC8167824.
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CK2 Phosphorylation of Human Papillomavirus 16 E2 on Serine 23 Promotes Interaction with TopBP1 and Is Critical for E2 Interaction with Mitotic Chromatin and the Viral Life Cycle.

mBio

Prabhakar AT, James CD, Das D, Otoa R, Day M, Burgner J, Fontan CT, Wang X, Glass SH, Wieland A, Donaldson MM, Bristol ML, Li R, Oliver AW, Pearl LH, Smith BO, Morgan IM.
PMID: 34544280
mBio. 2021 Oct 26;12(5):e0116321. doi: 10.1128/mBio.01163-21. Epub 2021 Sep 21.

During the human papillomavirus 16 (HPV16) life cycle, the E2 protein interacts with host factors to regulate viral transcription, replication, and genome segregation/retention. Our understanding of host partner proteins and their roles in E2 functions remains incomplete. Here we...

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Prabhakar AT, James CD, Das D, et al. CK2 Phosphorylation of Human Papillomavirus 16 E2 on Serine 23 Promotes Interaction with TopBP1 and Is Critical for E2 Interaction with Mitotic Chromatin and the Viral Life Cycle. mBio. 2021;12(5):e0116321doi: 10.1128/mBio.01163-21.
Prabhakar, A. T., James, C. D., Das, D., Otoa, R., Day, M., Burgner, J., Fontan, C. T., Wang, X., Glass, S. H., Wieland, A., Donaldson, M. M., Bristol, M. L., Li, R., Oliver, A. W., Pearl, L. H., Smith, B. O., & Morgan, I. M. (2021). CK2 Phosphorylation of Human Papillomavirus 16 E2 on Serine 23 Promotes Interaction with TopBP1 and Is Critical for E2 Interaction with Mitotic Chromatin and the Viral Life Cycle. mBio, 12(5), e0116321. https://doi.org/10.1128/mBio.01163-21
Prabhakar, Apurva T, et al. "CK2 Phosphorylation of Human Papillomavirus 16 E2 on Serine 23 Promotes Interaction with TopBP1 and Is Critical for E2 Interaction with Mitotic Chromatin and the Viral Life Cycle." mBio vol. 12,5 (2021): e0116321. doi: https://doi.org/10.1128/mBio.01163-21
Prabhakar AT, James CD, Das D, Otoa R, Day M, Burgner J, Fontan CT, Wang X, Glass SH, Wieland A, Donaldson MM, Bristol ML, Li R, Oliver AW, Pearl LH, Smith BO, Morgan IM. CK2 Phosphorylation of Human Papillomavirus 16 E2 on Serine 23 Promotes Interaction with TopBP1 and Is Critical for E2 Interaction with Mitotic Chromatin and the Viral Life Cycle. mBio. 2021 Oct 26;12(5):e0116321. doi: 10.1128/mBio.01163-21. Epub 2021 Sep 21. PMID: 34544280; PMCID: PMC8546539.
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REPLY.

Hepatology (Baltimore, Md.)

John BV, Deng Y, Martin P, Levy C, Taddei TH, Kaplan DE, Dahman B.
PMID: 34021933
Hepatology. 2021 Oct;74(4):2322-2323. doi: 10.1002/hep.31917. Epub 2021 Aug 15.

No abstract available.

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John BV, Deng Y, Martin P, et al. REPLY. Hepatology. 2021;74(4):2322-2323doi: 10.1002/hep.31917.
John, B. V., Deng, Y., Martin, P., Levy, C., Taddei, T. H., Kaplan, D. E., & Dahman, B. (2021). REPLY. Hepatology (Baltimore, Md.), 74(4), 2322-2323. https://doi.org/10.1002/hep.31917
John, Binu V, et al. "REPLY." Hepatology (Baltimore, Md.) vol. 74,4 (2021): 2322-2323. doi: https://doi.org/10.1002/hep.31917
John BV, Deng Y, Martin P, Levy C, Taddei TH, Kaplan DE, Dahman B. REPLY. Hepatology. 2021 Oct;74(4):2322-2323. doi: 10.1002/hep.31917. Epub 2021 Aug 15. PMID: 34021933; PMCID: PMC8463433.
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Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells.

Cancers

James CD, Saini S, Sesay F, Ko K, Felthousen-Rusbasan J, Iness AN, Nulton T, Windle B, Dozmorov MG, Morgan IM, Litovchick L.
PMID: 33513914
Cancers (Basel). 2021 Jan 27;13(3). doi: 10.3390/cancers13030489.

High-risk (HR) human papillomaviruses are known causative agents in 5% of human cancers including cervical, ano-genital and head and neck carcinomas. In part, HR-HPV causes cancer by targeting host-cell tumor suppressors including retinoblastoma protein (pRb) and RB-like proteins p107...

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James CD, Saini S, Sesay F, et al. Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells. Cancers (Basel). 2021;13(3)doi: 10.3390/cancers13030489.
James, C. D., Saini, S., Sesay, F., Ko, K., Felthousen-Rusbasan, J., Iness, A. N., Nulton, T., Windle, B., Dozmorov, M. G., Morgan, I. M., & Litovchick, L. (2021). Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells. Cancers, 13(3), . https://doi.org/10.3390/cancers13030489
James, Claire D, et al. "Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells." Cancers vol. 13,3 (2021). doi: https://doi.org/10.3390/cancers13030489
James CD, Saini S, Sesay F, Ko K, Felthousen-Rusbasan J, Iness AN, Nulton T, Windle B, Dozmorov MG, Morgan IM, Litovchick L. Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells. Cancers (Basel). 2021 Jan 27;13(3). doi: 10.3390/cancers13030489. PMID: 33513914; PMCID: PMC7866234.
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The Relationship between Estrogen-Related Signaling and Human Papillomavirus Positive Cancers.

Pathogens (Basel, Switzerland)

James CD, Morgan IM, Bristol ML.
PMID: 32455952
Pathogens. 2020 May 22;9(5). doi: 10.3390/pathogens9050403.

High risk-human papillomaviruses (HPVs) are known carcinogens. Numerous reports have linked the steroid hormone estrogen, and the expression of estrogen receptors (ERs), to HPV-related cancers, although the exact nature of the interactions remains to be fully elucidated. Here we...

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James CD, Morgan IM, Bristol ML. The Relationship between Estrogen-Related Signaling and Human Papillomavirus Positive Cancers. Pathogens. 2020;9(5)doi: 10.3390/pathogens9050403.
James, C. D., Morgan, I. M., & Bristol, M. L. (2020). The Relationship between Estrogen-Related Signaling and Human Papillomavirus Positive Cancers. Pathogens (Basel, Switzerland), 9(5), . https://doi.org/10.3390/pathogens9050403
James, Claire D, et al. "The Relationship between Estrogen-Related Signaling and Human Papillomavirus Positive Cancers." Pathogens (Basel, Switzerland) vol. 9,5 (2020). doi: https://doi.org/10.3390/pathogens9050403
James CD, Morgan IM, Bristol ML. The Relationship between Estrogen-Related Signaling and Human Papillomavirus Positive Cancers. Pathogens. 2020 May 22;9(5). doi: 10.3390/pathogens9050403. PMID: 32455952; PMCID: PMC7281727.
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