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Oral Microbiome Shifts From Caries-Free to Caries-Affected Status in 3-Year-Old Chinese Children: A Longitudinal Study.

Frontiers in microbiology

Xu H, Tian J, Hao W, Zhang Q, Zhou Q, Shi W, Qin M, He X, Chen F.
PMID: 30210479
Front Microbiol. 2018 Aug 28;9:2009. doi: 10.3389/fmicb.2018.02009. eCollection 2018.

As one of the most prevalent human infectious diseases, dental caries results from dysbiosis of the oral microbiota driven by multiple factors. However, most of caries studies were cross-sectional and mainly focused on the differences in the oral microbiota...

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Xu H, Tian J, Hao W, et al. Oral Microbiome Shifts From Caries-Free to Caries-Affected Status in 3-Year-Old Chinese Children: A Longitudinal Study. Front Microbiol. 2018;9:2009doi: 10.3389/fmicb.2018.02009.
Xu, H., Tian, J., Hao, W., Zhang, Q., Zhou, Q., Shi, W., Qin, M., He, X., & Chen, F. (2018). Oral Microbiome Shifts From Caries-Free to Caries-Affected Status in 3-Year-Old Chinese Children: A Longitudinal Study. Frontiers in microbiology, 92009. https://doi.org/10.3389/fmicb.2018.02009
Xu, He, et al. "Oral Microbiome Shifts From Caries-Free to Caries-Affected Status in 3-Year-Old Chinese Children: A Longitudinal Study." Frontiers in microbiology vol. 9 (2018): 2009. doi: https://doi.org/10.3389/fmicb.2018.02009
Xu H, Tian J, Hao W, Zhang Q, Zhou Q, Shi W, Qin M, He X, Chen F. Oral Microbiome Shifts From Caries-Free to Caries-Affected Status in 3-Year-Old Chinese Children: A Longitudinal Study. Front Microbiol. 2018 Aug 28;9:2009. doi: 10.3389/fmicb.2018.02009. eCollection 2018. PMID: 30210479; PMCID: PMC6121080.
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Draft Genome Sequence of "Candidatus Bacteroides periocalifornicus," a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients.

Genome announcements

McLean JS, Liu Q, Thompson J, Edlund A, Kelley S.
PMID: 26701081
Genome Announc. 2015 Dec 23;3(6). doi: 10.1128/genomeA.01485-15.

Here we present the draft genome of a distantly related member within the phylum Bacteriodetes, "Candidatus Bacteroides periocalifornicus." The draft genome sequence was assembled with metagenomic data from a patient with periodontitis. The closest relative has less than 68%...

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McLean JS, Liu Q, Thompson J, et al. Draft Genome Sequence of "Candidatus Bacteroides periocalifornicus," a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients. Genome Announc. 2015;3(6)doi: 10.1128/genomeA.01485-15.
McLean, J. S., Liu, Q., Thompson, J., Edlund, A., & Kelley, S. (2015). Draft Genome Sequence of "Candidatus Bacteroides periocalifornicus," a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients. Genome announcements, 3(6), . https://doi.org/10.1128/genomeA.01485-15
McLean, Jeffrey S, et al. "Draft Genome Sequence of "Candidatus Bacteroides periocalifornicus," a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients." Genome announcements vol. 3,6 (2015). doi: https://doi.org/10.1128/genomeA.01485-15
McLean JS, Liu Q, Thompson J, Edlund A, Kelley S. Draft Genome Sequence of "Candidatus Bacteroides periocalifornicus," a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients. Genome Announc. 2015 Dec 23;3(6). doi: 10.1128/genomeA.01485-15. PMID: 26701081; PMCID: PMC4691655.
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Draft Genome Sequence of .

Genome announcements

Hanson-Drury S, To TT, Liu Q, Vo AT, Kim M, Watling M, Bumgarner RS, McLean JS.
PMID: 28336586
Genome Announc. 2017 Mar 23;5(12). doi: 10.1128/genomeA.00024-17.

We present here the draft genome sequence of

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Hanson-Drury S, To TT, Liu Q, et al. Draft Genome Sequence of . Genome Announc. 2017;5(12)doi: 10.1128/genomeA.00024-17.
Hanson-Drury, S., To, T. T., Liu, Q., Vo, A. T., Kim, M., Watling, M., Bumgarner, R. S., & McLean, J. S. (2017). Draft Genome Sequence of . Genome announcements, 5(12), . https://doi.org/10.1128/genomeA.00024-17
Hanson-Drury, Sesha, et al. "Draft Genome Sequence of ." Genome announcements vol. 5,12 (2017). doi: https://doi.org/10.1128/genomeA.00024-17
Hanson-Drury S, To TT, Liu Q, Vo AT, Kim M, Watling M, Bumgarner RS, McLean JS. Draft Genome Sequence of . Genome Announc. 2017 Mar 23;5(12). doi: 10.1128/genomeA.00024-17. PMID: 28336586; PMCID: PMC5364211.
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Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum .

Microbiology resource announcements

Lamont EI, Hendrickson EL, McLean JS, He X, Bor B.
PMID: 32816985
Microbiol Resour Announc. 2020 Aug 20;9(34). doi: 10.1128/MRA.00810-20.

Strain BB001 is cultivated from the human oral cavity on its basibiont bacterial host

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Lamont EI, Hendrickson EL, McLean JS, et al. Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum . Microbiol Resour Announc. 2020;9(34)doi: 10.1128/MRA.00810-20.
Lamont, E. I., Hendrickson, E. L., McLean, J. S., He, X., & Bor, B. (2020). Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum . Microbiology resource announcements, 9(34), . https://doi.org/10.1128/MRA.00810-20
Lamont, Eleanor I, et al. "Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum ." Microbiology resource announcements vol. 9,34 (2020). doi: https://doi.org/10.1128/MRA.00810-20
Lamont EI, Hendrickson EL, McLean JS, He X, Bor B. Complete Genome Sequence of Strain BB001, a Novel Epibiont Bacterium from the Candidate Phylum . Microbiol Resour Announc. 2020 Aug 20;9(34). doi: 10.1128/MRA.00810-20. PMID: 32816985; PMCID: PMC7441243.
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Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation.

Cell host & microbe

Chipashvili O, Utter DR, Bedree JK, Ma Y, Schulte F, Mascarin G, Alayyoubi Y, Chouhan D, Hardt M, Bidlack F, Hasturk H, He X, McLean JS, Bor B.
PMID: 34637779
Cell Host Microbe. 2021 Nov 10;29(11):1649-1662.e7. doi: 10.1016/j.chom.2021.09.009. Epub 2021 Oct 11.

Saccharibacteria (TM7) are obligate epibionts living on the surface of their host bacteria and are strongly correlated with dysbiotic microbiomes during periodontitis and other inflammatory diseases, suggesting they are putative pathogens. However, due to the recalcitrance of TM7 cultivation,...

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Chipashvili O, Utter DR, Bedree JK, et al. Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation. Cell Host Microbe. 2021;29(11):1649-1662.e7doi: 10.1016/j.chom.2021.09.009.
Chipashvili, O., Utter, D. R., Bedree, J. K., Ma, Y., Schulte, F., Mascarin, G., Alayyoubi, Y., Chouhan, D., Hardt, M., Bidlack, F., Hasturk, H., He, X., McLean, J. S., & Bor, B. (2021). Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation. Cell host & microbe, 29(11), 1649-1662.e7. https://doi.org/10.1016/j.chom.2021.09.009
Chipashvili, Otari, et al. "Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation." Cell host & microbe vol. 29,11 (2021): 1649-1662.e7. doi: https://doi.org/10.1016/j.chom.2021.09.009
Chipashvili O, Utter DR, Bedree JK, Ma Y, Schulte F, Mascarin G, Alayyoubi Y, Chouhan D, Hardt M, Bidlack F, Hasturk H, He X, McLean JS, Bor B. Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation. Cell Host Microbe. 2021 Nov 10;29(11):1649-1662.e7. doi: 10.1016/j.chom.2021.09.009. Epub 2021 Oct 11. PMID: 34637779; PMCID: PMC8595704.
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Effects on Hardness and Elastic Modulus for DSS-8 Peptide Treatment on Remineralization of Human Dental Tissues.

Materials Research Society symposia proceedings. Materials Research Society

Hsu CC, Chung HY, Hagerman EM, Shi W, Yang JM, Wu B.
PMID: 25355990
Mater Res Soc Symp Proc. 2008;1132. doi: 10.1557/PROC-1132-Z09-05.

Dental remineralization may be achieved by mediating the interactions between tooth surfaces with free ions and biomimetic peptides. We recently developed octuplet repeats of aspartate-serine-serine (DSS-8) peptide, which occurs in high abundance in naturally occurring proteins that are critical...

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Hsu CC, Chung HY, Hagerman EM, et al. Effects on Hardness and Elastic Modulus for DSS-8 Peptide Treatment on Remineralization of Human Dental Tissues. Mater Res Soc Symp Proc. 2008;1132doi: 10.1557/PROC-1132-Z09-05.
Hsu, C. C., Chung, H. Y., Hagerman, E. M., Shi, W., Yang, J. M., & Wu, B. (2008). Effects on Hardness and Elastic Modulus for DSS-8 Peptide Treatment on Remineralization of Human Dental Tissues. Materials Research Society symposia proceedings. Materials Research Society, 1132. https://doi.org/10.1557/PROC-1132-Z09-05
Hsu, Chia-Chan, et al. "Effects on Hardness and Elastic Modulus for DSS-8 Peptide Treatment on Remineralization of Human Dental Tissues." Materials Research Society symposia proceedings. Materials Research Society vol. 1132 (2008). doi: https://doi.org/10.1557/PROC-1132-Z09-05
Hsu CC, Chung HY, Hagerman EM, Shi W, Yang JM, Wu B. Effects on Hardness and Elastic Modulus for DSS-8 Peptide Treatment on Remineralization of Human Dental Tissues. Mater Res Soc Symp Proc. 2008;1132. doi: 10.1557/PROC-1132-Z09-05. PMID: 25355990; PMCID: PMC4209483.
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Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont.

Genome announcements

McLean JS, Liu Q, Bor B, Bedree JK, Cen L, Watling M, To TT, Bumgarner RE, He X, Shi W.
PMID: 26847892
Genome Announc. 2016 Feb 04;4(1). doi: 10.1128/genomeA.01685-15.

Here, we present the draft genome sequence of Actinomyces odontolyticus subsp. actinosynbacter strain XH001, isolated from the human oral cavity. Uniquely, it was discovered as a host bacterium to the ultrasmall epibiont TM7x, which is the first cultivated member...

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McLean JS, Liu Q, Bor B, et al. Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont. Genome Announc. 2016;4(1)doi: 10.1128/genomeA.01685-15.
McLean, J. S., Liu, Q., Bor, B., Bedree, J. K., Cen, L., Watling, M., To, T. T., Bumgarner, R. E., He, X., & Shi, W. (2016). Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont. Genome announcements, 4(1), . https://doi.org/10.1128/genomeA.01685-15
McLean, Jeffrey S, et al. "Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont." Genome announcements vol. 4,1 (2016). doi: https://doi.org/10.1128/genomeA.01685-15
McLean JS, Liu Q, Bor B, Bedree JK, Cen L, Watling M, To TT, Bumgarner RE, He X, Shi W. Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont. Genome Announc. 2016 Feb 04;4(1). doi: 10.1128/genomeA.01685-15. PMID: 26847892; PMCID: PMC4742689.
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Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between .

Frontiers in microbiology

Bedree JK, Bor B, Cen L, Edlund A, Lux R, McLean JS, Shi W, He X.
PMID: 30319555
Front Microbiol. 2018 Sep 24;9:2049. doi: 10.3389/fmicb.2018.02049. eCollection 2018.

The ultra-small, obligate parasitic epibiont, TM7x, the first and only current member of the long-elusive Saccharibacteria (formerly the TM7 phylum) phylum to be cultivated, was isolated in co-culture with its bacterial host,

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Bedree JK, Bor B, Cen L, et al. Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between . Front Microbiol. 2018;9:2049doi: 10.3389/fmicb.2018.02049.
Bedree, J. K., Bor, B., Cen, L., Edlund, A., Lux, R., McLean, J. S., Shi, W., & He, X. (2018). Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between . Frontiers in microbiology, 92049. https://doi.org/10.3389/fmicb.2018.02049
Bedree, Joseph K, et al. "Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between ." Frontiers in microbiology vol. 9 (2018): 2049. doi: https://doi.org/10.3389/fmicb.2018.02049
Bedree JK, Bor B, Cen L, Edlund A, Lux R, McLean JS, Shi W, He X. Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between . Front Microbiol. 2018 Sep 24;9:2049. doi: 10.3389/fmicb.2018.02049. eCollection 2018. PMID: 30319555; PMCID: PMC6166536.
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Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules.

mSystems

Edlund A, Garg N, Mohimani H, Gurevich A, He X, Shi W, Dorrestein PC, McLean JS.
PMID: 28761934
mSystems. 2017 Jul 18;2(4). doi: 10.1128/mSystems.00058-17. eCollection 2017.

Recent research indicates that the human microbiota play key roles in maintaining health by providing essential nutrients, providing immune education, and preventing pathogen expansion. Processes underlying the transition from a healthy human microbiome to a disease-associated microbiome are poorly...

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Edlund A, Garg N, Mohimani H, et al. Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules. mSystems. 2017;2(4)doi: 10.1128/mSystems.00058-17.
Edlund, A., Garg, N., Mohimani, H., Gurevich, A., He, X., Shi, W., Dorrestein, P. C., & McLean, J. S. (2017). Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules. mSystems, 2(4), . https://doi.org/10.1128/mSystems.00058-17
Edlund, Anna, et al. "Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules." mSystems vol. 2,4 (2017). doi: https://doi.org/10.1128/mSystems.00058-17
Edlund A, Garg N, Mohimani H, Gurevich A, He X, Shi W, Dorrestein PC, McLean JS. Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules. mSystems. 2017 Jul 18;2(4). doi: 10.1128/mSystems.00058-17. eCollection 2017. PMID: 28761934; PMCID: PMC5516222.
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High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model.

Genome announcements

Edlund A, Liu Q, Watling M, To TT, Bumgarner RE, He X, Shi W, McLean JS.
PMID: 26893419
Genome Announc. 2016 Feb 18;4(1). doi: 10.1128/genomeA.01684-15.

We announce here a draft genome sequence of Veillonella parvula strain SHI-1, obtained from healthy human saliva, discovered to be active at low pH using metatranscriptomics within an in vitro oral biofilm model. The genome is composed of 7...

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Edlund A, Liu Q, Watling M, et al. High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model. Genome Announc. 2016;4(1)doi: 10.1128/genomeA.01684-15.
Edlund, A., Liu, Q., Watling, M., To, T. T., Bumgarner, R. E., He, X., Shi, W., & McLean, J. S. (2016). High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model. Genome announcements, 4(1), . https://doi.org/10.1128/genomeA.01684-15
Edlund, Anna, et al. "High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model." Genome announcements vol. 4,1 (2016). doi: https://doi.org/10.1128/genomeA.01684-15
Edlund A, Liu Q, Watling M, To TT, Bumgarner RE, He X, Shi W, McLean JS. High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model. Genome Announc. 2016 Feb 18;4(1). doi: 10.1128/genomeA.01684-15. PMID: 26893419; PMCID: PMC4759066.
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Single cell genomics of bacterial pathogens: outlook for infectious disease research.

Genome medicine

McLean JS, Lasken RS.
PMID: 25621014
Genome Med. 2014 Nov 20;6(11):108. doi: 10.1186/s13073-014-0108-0. eCollection 2014.

Genomic sequencing from single cells is a powerful tool in microbiology and holds great promise for infectious disease research. Vast numbers of uncultivable species and pathogens that persist at low abundance in environmental reservoirs are now accessible for genomic...

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McLean JS, Lasken RS. Single cell genomics of bacterial pathogens: outlook for infectious disease research. Genome Med. 2014;6(11):108doi: 10.1186/s13073-014-0108-0.
McLean, J. S., & Lasken, R. S. (2014). Single cell genomics of bacterial pathogens: outlook for infectious disease research. Genome medicine, 6(11), 108. https://doi.org/10.1186/s13073-014-0108-0
McLean, Jeffrey S, and Lasken, Roger S. "Single cell genomics of bacterial pathogens: outlook for infectious disease research." Genome medicine vol. 6,11 (2014): 108. doi: https://doi.org/10.1186/s13073-014-0108-0
McLean JS, Lasken RS. Single cell genomics of bacterial pathogens: outlook for infectious disease research. Genome Med. 2014 Nov 20;6(11):108. doi: 10.1186/s13073-014-0108-0. eCollection 2014. PMID: 25621014; PMCID: PMC4304388.
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Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation.

Cell host & microbe

Chipashvili O, Utter DR, Bedree JK, Ma Y, Schulte F, Mascarin G, Alayyoubi Y, Chouhan D, Hardt M, Bidlack F, Hasturk H, He X, McLean JS, Bor B.
PMID: 34637779
Cell Host Microbe. 2021 Nov 10;29(11):1649-1662.e7. doi: 10.1016/j.chom.2021.09.009. Epub 2021 Oct 11.

Saccharibacteria (TM7) are obligate epibionts living on the surface of their host bacteria and are strongly correlated with dysbiotic microbiomes during periodontitis and other inflammatory diseases, suggesting they are putative pathogens. However, due to the recalcitrance of TM7 cultivation,...

Cite
Chipashvili O, Utter DR, Bedree JK, et al. Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation. Cell Host Microbe. 2021;29(11):1649-1662.e7doi: 10.1016/j.chom.2021.09.009.
Chipashvili, O., Utter, D. R., Bedree, J. K., Ma, Y., Schulte, F., Mascarin, G., Alayyoubi, Y., Chouhan, D., Hardt, M., Bidlack, F., Hasturk, H., He, X., McLean, J. S., & Bor, B. (2021). Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation. Cell host & microbe, 29(11), 1649-1662.e7. https://doi.org/10.1016/j.chom.2021.09.009
Chipashvili, Otari, et al. "Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation." Cell host & microbe vol. 29,11 (2021): 1649-1662.e7. doi: https://doi.org/10.1016/j.chom.2021.09.009
Chipashvili O, Utter DR, Bedree JK, Ma Y, Schulte F, Mascarin G, Alayyoubi Y, Chouhan D, Hardt M, Bidlack F, Hasturk H, He X, McLean JS, Bor B. Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation. Cell Host Microbe. 2021 Nov 10;29(11):1649-1662.e7. doi: 10.1016/j.chom.2021.09.009. Epub 2021 Oct 11. PMID: 34637779; PMCID: PMC8595704.
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Showing 1 to 12 of 15 entries