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Capillary zone electrophoresis-tandem mass spectrometry using ultraviolet photodissociation (213 nm) for large-scale top-down proteomics.

Analytical methods : advancing methods and applications

McCool EN, Chen D, Li W, Liu Y, Sun L.
PMID: 31608127
Anal Methods. 2019 Jun 14;11(22):2855-2861. doi: 10.1039/C9AY00585D. Epub 2019 May 07.

Capillary zone electrophoresis-tandem mass spectrometry (CZE-MS/MS) has attracted attention recently for large-scale top-down proteomics that aims to characterize proteoforms in cells at a global scale and with high throughput. In this work, CZE-MS/MS with ultraviolet photodissociation (UVPD) was evaluated...

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McCool EN, Chen D, Li W, et al. Capillary zone electrophoresis-tandem mass spectrometry using ultraviolet photodissociation (213 nm) for large-scale top-down proteomics. Anal Methods. 2019;11(22):2855-2861doi: 10.1039/C9AY00585D.
McCool, E. N., Chen, D., Li, W., Liu, Y., & Sun, L. (2019). Capillary zone electrophoresis-tandem mass spectrometry using ultraviolet photodissociation (213 nm) for large-scale top-down proteomics. Analytical methods : advancing methods and applications, 11(22), 2855-2861. https://doi.org/10.1039/C9AY00585D
McCool, Elijah N, et al. "Capillary zone electrophoresis-tandem mass spectrometry using ultraviolet photodissociation (213 nm) for large-scale top-down proteomics." Analytical methods : advancing methods and applications vol. 11,22 (2019): 2855-2861. doi: https://doi.org/10.1039/C9AY00585D
McCool EN, Chen D, Li W, Liu Y, Sun L. Capillary zone electrophoresis-tandem mass spectrometry using ultraviolet photodissociation (213 nm) for large-scale top-down proteomics. Anal Methods. 2019 Jun 14;11(22):2855-2861. doi: 10.1039/C9AY00585D. Epub 2019 May 07. PMID: 31608127; PMCID: PMC6788745.
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Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics.

Mass spectrometry reviews

Chen D, McCool EN, Yang Z, Shen X, Lubeckyj RA, Xu T, Wang Q, Sun L.
PMID: 34128246
Mass Spectrom Rev. 2021 Jun 15; doi: 10.1002/mas.21714. Epub 2021 Jun 15.

Multilevel proteomics aims to delineate proteins at the peptide (bottom-up proteomics), proteoform (top-down proteomics), and protein complex (native proteomics) levels. Capillary electrophoresis-mass spectrometry (CE-MS) can achieve highly efficient separation and highly sensitive detection of complex mixtures of peptides, proteoforms,...

Cite
Chen D, McCool EN, Yang Z, et al. Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics. Mass Spectrom Rev. 2021;doi: 10.1002/mas.21714.
Chen, D., McCool, E. N., Yang, Z., Shen, X., Lubeckyj, R. A., Xu, T., Wang, Q., & Sun, L. (2021). Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics. Mass spectrometry reviews, . https://doi.org/10.1002/mas.21714
Chen, Daoyang, et al. "Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics." Mass spectrometry reviews vol. (2021). doi: https://doi.org/10.1002/mas.21714
Chen D, McCool EN, Yang Z, Shen X, Lubeckyj RA, Xu T, Wang Q, Sun L. Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics. Mass Spectrom Rev. 2021 Jun 15; doi: 10.1002/mas.21714. Epub 2021 Jun 15. PMID: 34128246.
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Capillary zone electrophoresis-tandem mass spectrometry for top-down proteomics using attapulgite nanoparticles functionalized separation capillaries.

Talanta

Wang T, Chen D, Lubeckyj RA, Shen X, Yang Z, McCool EN, Qiao X, Sun L.
PMID: 31171165
Talanta. 2019 Sep 01;202:165-170. doi: 10.1016/j.talanta.2019.04.040. Epub 2019 Apr 21.

Attapulgite nanoparticles have good chemical properties and can be modified easily for broad applications. In this work, for the first time, attapulgite nanoparticles were employed to modify the inner wall of separation capillaries for capillary zone electrophoresis-tandem mass spectrometry...

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Wang T, Chen D, Lubeckyj RA, et al. Capillary zone electrophoresis-tandem mass spectrometry for top-down proteomics using attapulgite nanoparticles functionalized separation capillaries. Talanta. 2019;202:165-170doi: 10.1016/j.talanta.2019.04.040.
Wang, T., Chen, D., Lubeckyj, R. A., Shen, X., Yang, Z., McCool, E. N., Qiao, X., & Sun, L. (2019). Capillary zone electrophoresis-tandem mass spectrometry for top-down proteomics using attapulgite nanoparticles functionalized separation capillaries. Talanta, 202165-170. https://doi.org/10.1016/j.talanta.2019.04.040
Wang, Tingting, et al. "Capillary zone electrophoresis-tandem mass spectrometry for top-down proteomics using attapulgite nanoparticles functionalized separation capillaries." Talanta vol. 202 (2019): 165-170. doi: https://doi.org/10.1016/j.talanta.2019.04.040
Wang T, Chen D, Lubeckyj RA, Shen X, Yang Z, McCool EN, Qiao X, Sun L. Capillary zone electrophoresis-tandem mass spectrometry for top-down proteomics using attapulgite nanoparticles functionalized separation capillaries. Talanta. 2019 Sep 01;202:165-170. doi: 10.1016/j.talanta.2019.04.040. Epub 2019 Apr 21. PMID: 31171165; PMCID: PMC6557293.
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Capillary zone electrophoresis-mass spectrometry for top-down proteomics.

Trends in analytical chemistry : TRAC

Shen X, Yang Z, McCool EN, Lubeckyj RA, Chen D, Sun L.
PMID: 31537953
Trends Analyt Chem. 2019 Nov;120. doi: 10.1016/j.trac.2019.115644. Epub 2019 Aug 28.

Mass spectrometry (MS)-based top-down proteomics characterizes complex proteomes at the intact proteoform level and provides an accurate picture of protein isoforms and protein post-translational modifications in the cell. The progress of top-down proteomics requires novel analytical tools with high...

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Shen X, Yang Z, McCool EN, et al. Capillary zone electrophoresis-mass spectrometry for top-down proteomics. Trends Analyt Chem. 2019;120doi: 10.1016/j.trac.2019.115644.
Shen, X., Yang, Z., McCool, E. N., Lubeckyj, R. A., Chen, D., & Sun, L. (2019). Capillary zone electrophoresis-mass spectrometry for top-down proteomics. Trends in analytical chemistry : TRAC, 120. https://doi.org/10.1016/j.trac.2019.115644
Shen, Xiaojing, et al. "Capillary zone electrophoresis-mass spectrometry for top-down proteomics." Trends in analytical chemistry : TRAC vol. 120 (2019). doi: https://doi.org/10.1016/j.trac.2019.115644
Shen X, Yang Z, McCool EN, Lubeckyj RA, Chen D, Sun L. Capillary zone electrophoresis-mass spectrometry for top-down proteomics. Trends Analyt Chem. 2019 Nov;120. doi: 10.1016/j.trac.2019.115644. Epub 2019 Aug 28. PMID: 31537953; PMCID: PMC6752746.
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Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins.

Journal of the American Society for Mass Spectrometry

Shen X, Xu T, Hakkila B, Hare M, Wang Q, Wang Q, Beckman JS, Sun L.
PMID: 33749270
J Am Soc Mass Spectrom. 2021 Jun 02;32(6):1361-1369. doi: 10.1021/jasms.0c00484. Epub 2021 Mar 22.

Mass spectrometry (MS)-based denaturing top-down proteomics (dTDP) requires high-capacity separation and extensive gas-phase fragmentation of proteoforms. Herein, we coupled capillary zone electrophoresis (CZE) to electron-capture collision-induced dissociation (ECciD) on an Agilent 6545 XT quadrupole time-of-flight (Q-TOF) mass spectrometer for...

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Shen X, Xu T, Hakkila B, et al. Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins. J Am Soc Mass Spectrom. 2021;32(6):1361-1369doi: 10.1021/jasms.0c00484.
Shen, X., Xu, T., Hakkila, B., Hare, M., Wang, Q., Wang, Q., Beckman, J. S., & Sun, L. (2021). Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins. Journal of the American Society for Mass Spectrometry, 32(6), 1361-1369. https://doi.org/10.1021/jasms.0c00484
Shen, Xiaojing, et al. "Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins." Journal of the American Society for Mass Spectrometry vol. 32,6 (2021): 1361-1369. doi: https://doi.org/10.1021/jasms.0c00484
Shen X, Xu T, Hakkila B, Hare M, Wang Q, Wang Q, Beckman JS, Sun L. Capillary Zone Electrophoresis-Electron-Capture Collision-Induced Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Top-Down Characterization of Intact Proteins. J Am Soc Mass Spectrom. 2021 Jun 02;32(6):1361-1369. doi: 10.1021/jasms.0c00484. Epub 2021 Mar 22. PMID: 33749270; PMCID: PMC8576897.
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Investigating native capillary zone electrophoresis-mass spectrometry on a high-end quadrupole-time-of-flight mass spectrometer for the characterization of monoclonal antibodies.

International journal of mass spectrometry

Shen X, Liang Z, Xu T, Yang Z, Wang Q, Chen D, Pham L, Du W, Sun L.
PMID: 33642939
Int J Mass Spectrom. 2021 Apr;462. doi: 10.1016/j.ijms.2021.116541. Epub 2021 Jan 30.

Native capillary zone electrophoresis-mass spectrometry (CZE-MS) has attracted attentions for the characterization of monoclonal antibodies (mAbs) due to the potential of CZE for highly efficient separations of mAbs under native conditions as well as its compatibility with native electrospray...

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Shen X, Liang Z, Xu T, et al. Investigating native capillary zone electrophoresis-mass spectrometry on a high-end quadrupole-time-of-flight mass spectrometer for the characterization of monoclonal antibodies. Int J Mass Spectrom. 2021;462doi: 10.1016/j.ijms.2021.116541.
Shen, X., Liang, Z., Xu, T., Yang, Z., Wang, Q., Chen, D., Pham, L., Du, W., & Sun, L. (2021). Investigating native capillary zone electrophoresis-mass spectrometry on a high-end quadrupole-time-of-flight mass spectrometer for the characterization of monoclonal antibodies. International journal of mass spectrometry, 462. https://doi.org/10.1016/j.ijms.2021.116541
Shen, Xiaojing, et al. "Investigating native capillary zone electrophoresis-mass spectrometry on a high-end quadrupole-time-of-flight mass spectrometer for the characterization of monoclonal antibodies." International journal of mass spectrometry vol. 462 (2021). doi: https://doi.org/10.1016/j.ijms.2021.116541
Shen X, Liang Z, Xu T, Yang Z, Wang Q, Chen D, Pham L, Du W, Sun L. Investigating native capillary zone electrophoresis-mass spectrometry on a high-end quadrupole-time-of-flight mass spectrometer for the characterization of monoclonal antibodies. Int J Mass Spectrom. 2021 Apr;462. doi: 10.1016/j.ijms.2021.116541. Epub 2021 Jan 30. PMID: 33642939; PMCID: PMC7906288.
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A Mini Review on Capillary Isoelectric Focusing-Mass Spectrometry for Top-Down Proteomics.

Frontiers in chemistry

Xu T, Sun L.
PMID: 33898392
Front Chem. 2021 Apr 09;9:651757. doi: 10.3389/fchem.2021.651757. eCollection 2021.

Mass spectrometry (MS)-based top-down proteomics (TDP) requires high-resolution separation of proteoforms before electrospray ionization (ESI)-MS and tandem mass spectrometry (MS/MS). Capillary isoelectric focusing (cIEF)-ESI-MS and MS/MS could be an ideal method for TDP because cIEF can enable separation of...

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Xu T, Sun L. A Mini Review on Capillary Isoelectric Focusing-Mass Spectrometry for Top-Down Proteomics. Front Chem. 2021;9:651757doi: 10.3389/fchem.2021.651757.
Xu, T., & Sun, L. (2021). A Mini Review on Capillary Isoelectric Focusing-Mass Spectrometry for Top-Down Proteomics. Frontiers in chemistry, 9651757. https://doi.org/10.3389/fchem.2021.651757
Xu, Tian, and Sun, Liangliang. "A Mini Review on Capillary Isoelectric Focusing-Mass Spectrometry for Top-Down Proteomics." Frontiers in chemistry vol. 9 (2021): 651757. doi: https://doi.org/10.3389/fchem.2021.651757
Xu T, Sun L. A Mini Review on Capillary Isoelectric Focusing-Mass Spectrometry for Top-Down Proteomics. Front Chem. 2021 Apr 09;9:651757. doi: 10.3389/fchem.2021.651757. eCollection 2021. PMID: 33898392; PMCID: PMC8063032.
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Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry.

Journal of proteome research

Chen W, Liu X.
PMID: 33183009
J Proteome Res. 2021 Jan 01;20(1):261-269. doi: 10.1021/acs.jproteome.0c00369. Epub 2020 Nov 12.

In proteogenomic studies, genomic and transcriptomic variants are incorporated into customized protein databases for the identification of proteoforms, especially proteoforms with sample-specific variants. Most proteogenomic research has been focused on combining genomic or transcriptomic data with bottom-up mass spectrometry...

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Chen W, Liu X. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry. J Proteome Res. 2020;20(1):261-269doi: 10.1021/acs.jproteome.0c00369.
Chen, W., & Liu, X. (2021). Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry. Journal of proteome research, 20(1), 261-269. https://doi.org/10.1021/acs.jproteome.0c00369
Chen, Wenrong, and Liu, Xiaowen. "Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry." Journal of proteome research vol. 20,1 (2021): 261-269. doi: https://doi.org/10.1021/acs.jproteome.0c00369
Chen W, Liu X. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry. J Proteome Res. 2021 Jan 01;20(1):261-269. doi: 10.1021/acs.jproteome.0c00369. Epub 2020 Nov 12. PMID: 33183009; PMCID: PMC7775893.
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Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry.

Journal of proteome research

Chen W, Liu X.
PMID: 33183009
J Proteome Res. 2021 Jan 01;20(1):261-269. doi: 10.1021/acs.jproteome.0c00369. Epub 2020 Nov 12.

In proteogenomic studies, genomic and transcriptomic variants are incorporated into customized protein databases for the identification of proteoforms, especially proteoforms with sample-specific variants. Most proteogenomic research has been focused on combining genomic or transcriptomic data with bottom-up mass spectrometry...

Cite
Chen W, Liu X. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry. J Proteome Res. 2020;20(1):261-269doi: 10.1021/acs.jproteome.0c00369.
Chen, W., & Liu, X. (2021). Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry. Journal of proteome research, 20(1), 261-269. https://doi.org/10.1021/acs.jproteome.0c00369
Chen, Wenrong, and Liu, Xiaowen. "Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry." Journal of proteome research vol. 20,1 (2021): 261-269. doi: https://doi.org/10.1021/acs.jproteome.0c00369
Chen W, Liu X. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry. J Proteome Res. 2021 Jan 01;20(1):261-269. doi: 10.1021/acs.jproteome.0c00369. Epub 2020 Nov 12. PMID: 33183009; PMCID: PMC7775893.
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TopMSV: A Web-Based Tool for Top-Down Mass Spectrometry Data Visualization.

Journal of the American Society for Mass Spectrometry

Choi IK, Jiang T, Kankara SR, Wu S, Liu X.
PMID: 33780241
J Am Soc Mass Spectrom. 2021 Jun 02;32(6):1312-1318. doi: 10.1021/jasms.0c00460. Epub 2021 Mar 29.

Top-down mass spectrometry (MS) investigates intact proteoforms for proteoform identification, characterization, and quantification. Data visualization plays an essential role in top-down MS data analysis because proteoform identification and characterization often involve manual data inspection to determine the molecular masses...

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Choi IK, Jiang T, Kankara SR, et al. TopMSV: A Web-Based Tool for Top-Down Mass Spectrometry Data Visualization. J Am Soc Mass Spectrom. 2021;32(6):1312-1318doi: 10.1021/jasms.0c00460.
Choi, I. K., Jiang, T., Kankara, S. R., Wu, S., & Liu, X. (2021). TopMSV: A Web-Based Tool for Top-Down Mass Spectrometry Data Visualization. Journal of the American Society for Mass Spectrometry, 32(6), 1312-1318. https://doi.org/10.1021/jasms.0c00460
Choi, In Kwon, et al. "TopMSV: A Web-Based Tool for Top-Down Mass Spectrometry Data Visualization." Journal of the American Society for Mass Spectrometry vol. 32,6 (2021): 1312-1318. doi: https://doi.org/10.1021/jasms.0c00460
Choi IK, Jiang T, Kankara SR, Wu S, Liu X. TopMSV: A Web-Based Tool for Top-Down Mass Spectrometry Data Visualization. J Am Soc Mass Spectrom. 2021 Jun 02;32(6):1312-1318. doi: 10.1021/jasms.0c00460. Epub 2021 Mar 29. PMID: 33780241; PMCID: PMC8172439.
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Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics.

Mass spectrometry reviews

Chen D, McCool EN, Yang Z, Shen X, Lubeckyj RA, Xu T, Wang Q, Sun L.
PMID: 34128246
Mass Spectrom Rev. 2021 Jun 15; doi: 10.1002/mas.21714. Epub 2021 Jun 15.

Multilevel proteomics aims to delineate proteins at the peptide (bottom-up proteomics), proteoform (top-down proteomics), and protein complex (native proteomics) levels. Capillary electrophoresis-mass spectrometry (CE-MS) can achieve highly efficient separation and highly sensitive detection of complex mixtures of peptides, proteoforms,...

Cite
Chen D, McCool EN, Yang Z, et al. Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics. Mass Spectrom Rev. 2021;doi: 10.1002/mas.21714.
Chen, D., McCool, E. N., Yang, Z., Shen, X., Lubeckyj, R. A., Xu, T., Wang, Q., & Sun, L. (2021). Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics. Mass spectrometry reviews, . https://doi.org/10.1002/mas.21714
Chen, Daoyang, et al. "Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics." Mass spectrometry reviews vol. (2021). doi: https://doi.org/10.1002/mas.21714
Chen D, McCool EN, Yang Z, Shen X, Lubeckyj RA, Xu T, Wang Q, Sun L. Recent advances (2019-2021) of capillary electrophoresis-mass spectrometry for multilevel proteomics. Mass Spectrom Rev. 2021 Jun 15; doi: 10.1002/mas.21714. Epub 2021 Jun 15. PMID: 34128246; PMCID: PMC8671558.
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