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Coupling bounds for approximating birth-death processes by truncation.

Statistics & probability letters

Crawford FW, Stutz TC, Lange K.
PMID: 26622074
Stat Probab Lett. 2016 Feb 01;109:30-38. doi: 10.1016/j.spl.2015.10.013.

Birth-death processes are continuous-time Markov counting processes. Approximate moments can be computed by truncating the transition rate matrix. Using a coupling argument, we derive bounds for the total variation distance between the process and its finite approximation.

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Crawford FW, Stutz TC, Lange K. Coupling bounds for approximating birth-death processes by truncation. Stat Probab Lett. 2016;109:30-38doi: 10.1016/j.spl.2015.10.013.
Crawford, F. W., Stutz, T. C., & Lange, K. (2016). Coupling bounds for approximating birth-death processes by truncation. Statistics & probability letters, 10930-38. https://doi.org/10.1016/j.spl.2015.10.013
Crawford, Forrest W, et al. "Coupling bounds for approximating birth-death processes by truncation." Statistics & probability letters vol. 109 (2016): 30-38. doi: https://doi.org/10.1016/j.spl.2015.10.013
Crawford FW, Stutz TC, Lange K. Coupling bounds for approximating birth-death processes by truncation. Stat Probab Lett. 2016 Feb 01;109:30-38. doi: 10.1016/j.spl.2015.10.013. PMID: 26622074; PMCID: PMC4662656.
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Dysfunctional Attitudes and Affective Responses to Daily Stressors: Separating Cognitive, Genetic, and Clinical Influences on Stress Reactivity.

Cognitive therapy and research

Conway CC, Slavich GM, Hammen C.
PMID: 27041782
Cognit Ther Res. 2015 Jun;39(3):366-377. doi: 10.1007/s10608-014-9657-1. Epub 2014 Dec 31.

Despite decades of research examining diathesis-stress models of emotional disorders, it remains unclear whether dysfunctional attitudes interact with stressful experiences to shape affect on a daily basis and, if so, how clinical and genetic factors influence these associations. To...

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Conway CC, Slavich GM, Hammen C. Dysfunctional Attitudes and Affective Responses to Daily Stressors: Separating Cognitive, Genetic, and Clinical Influences on Stress Reactivity. Cognit Ther Res. 2014;39(3):366-377doi: 10.1007/s10608-014-9657-1.
Conway, C. C., Slavich, G. M., & Hammen, C. (2015). Dysfunctional Attitudes and Affective Responses to Daily Stressors: Separating Cognitive, Genetic, and Clinical Influences on Stress Reactivity. Cognitive therapy and research, 39(3), 366-377. https://doi.org/10.1007/s10608-014-9657-1
Conway, Christopher C, et al. "Dysfunctional Attitudes and Affective Responses to Daily Stressors: Separating Cognitive, Genetic, and Clinical Influences on Stress Reactivity." Cognitive therapy and research vol. 39,3 (2015): 366-377. doi: https://doi.org/10.1007/s10608-014-9657-1
Conway CC, Slavich GM, Hammen C. Dysfunctional Attitudes and Affective Responses to Daily Stressors: Separating Cognitive, Genetic, and Clinical Influences on Stress Reactivity. Cognit Ther Res. 2015 Jun;39(3):366-377. doi: 10.1007/s10608-014-9657-1. Epub 2014 Dec 31. PMID: 27041782; PMCID: PMC4817852.
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MM Algorithms for Some Discrete Multivariate Distributions.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America

Zhou H, Lange K.
PMID: 20877446
J Comput Graph Stat. 2010 Sep 01;19(3):645-665. doi: 10.1198/jcgs.2010.09014.

The MM (minorization-maximization) principle is a versatile tool for constructing optimization algorithms. Every EM algorithm is an MM algorithm but not vice versa. This article derives MM algorithms for maximum likelihood estimation with discrete multivariate distributions such as the...

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Zhou H, Lange K. MM Algorithms for Some Discrete Multivariate Distributions. J Comput Graph Stat. 2010;19(3):645-665doi: 10.1198/jcgs.2010.09014.
Zhou, H., & Lange, K. (2010). MM Algorithms for Some Discrete Multivariate Distributions. Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America, 19(3), 645-665. https://doi.org/10.1198/jcgs.2010.09014
Zhou, Hua, and Lange, Kenneth. "MM Algorithms for Some Discrete Multivariate Distributions." Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America vol. 19,3 (2010): 645-665. doi: https://doi.org/10.1198/jcgs.2010.09014
Zhou H, Lange K. MM Algorithms for Some Discrete Multivariate Distributions. J Comput Graph Stat. 2010 Sep 01;19(3):645-665. doi: 10.1198/jcgs.2010.09014. PMID: 20877446; PMCID: PMC2945396.
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Adamantane-1-thio-amide.

Acta crystallographica. Section E, Structure reports online

Zahid M, Khawar Rauf M, Bolte M, Hameed S.
PMID: 21583581
Acta Crystallogr Sect E Struct Rep Online. 2009 Jul 18;65:o1891. doi: 10.1107/S1600536809027470.

The title compound, C(11)H(17)NS, is an important inter-mediate for the synthesis of biologically active adamantlythia-zolo-oxadiazo-les. The adamantyl residue is disordered about a twofold rotation axis over two sites with site-occupation factors of 0.817 (3) and 0.183 (3). The crystal...

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Zahid M, Khawar Rauf M, Bolte M, et al. Adamantane-1-thio-amide. Acta Crystallogr Sect E Struct Rep Online. 2009;65:o1891doi: 10.1107/S1600536809027470.
Zahid, M., Khawar Rauf, M., Bolte, M., & Hameed, S. (2009). Adamantane-1-thio-amide. Acta crystallographica. Section E, Structure reports online, 65o1891. https://doi.org/10.1107/S1600536809027470
Zahid, Maryam, et al. "Adamantane-1-thio-amide." Acta crystallographica. Section E, Structure reports online vol. 65 (2009): o1891. doi: https://doi.org/10.1107/S1600536809027470
Zahid M, Khawar Rauf M, Bolte M, Hameed S. Adamantane-1-thio-amide. Acta Crystallogr Sect E Struct Rep Online. 2009 Jul 18;65:o1891. doi: 10.1107/S1600536809027470. PMID: 21583581; PMCID: PMC2977118.
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Attempted DNA extraction from a Rancho La Brea Columbian mammoth (Mammuthus columbi): prospects for ancient DNA from asphalt deposits.

Ecology and evolution

Gold DA, Robinson J, Farrell AB, Harris JM, Thalmann O, Jacobs DK.
PMID: 24634719
Ecol Evol. 2014 Feb;4(4):329-36. doi: 10.1002/ece3.928. Epub 2014 Jan 11.

Fossil-bearing asphalt deposits are an understudied and potentially significant source of ancient DNA. Previous attempts to extract DNA from skeletons preserved at the Rancho La Brea tar pits in Los Angeles, California, have proven unsuccessful, but it is unclear...

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Gold DA, Robinson J, Farrell AB, et al. Attempted DNA extraction from a Rancho La Brea Columbian mammoth (Mammuthus columbi): prospects for ancient DNA from asphalt deposits. Ecol Evol. 2014;4(4):329-36doi: 10.1002/ece3.928.
Gold, D. A., Robinson, J., Farrell, A. B., Harris, J. M., Thalmann, O., & Jacobs, D. K. (2014). Attempted DNA extraction from a Rancho La Brea Columbian mammoth (Mammuthus columbi): prospects for ancient DNA from asphalt deposits. Ecology and evolution, 4(4), 329-36. https://doi.org/10.1002/ece3.928
Gold, David A, et al. "Attempted DNA extraction from a Rancho La Brea Columbian mammoth (Mammuthus columbi): prospects for ancient DNA from asphalt deposits." Ecology and evolution vol. 4,4 (2014): 329-36. doi: https://doi.org/10.1002/ece3.928
Gold DA, Robinson J, Farrell AB, Harris JM, Thalmann O, Jacobs DK. Attempted DNA extraction from a Rancho La Brea Columbian mammoth (Mammuthus columbi): prospects for ancient DNA from asphalt deposits. Ecol Evol. 2014 Feb;4(4):329-36. doi: 10.1002/ece3.928. Epub 2014 Jan 11. PMID: 24634719; PMCID: PMC3936381.
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Daily stress reactivity and serotonin transporter gene (5-HTTLPR) variation: internalizing responses to everyday stress as a possible transdiagnostic phenotype.

Biology of mood & anxiety disorders

Conway CC, Slavich GM, Hammen C.
PMID: 24461074
Biol Mood Anxiety Disord. 2014 Jan 24;4(1):2. doi: 10.1186/2045-5380-4-2.

BACKGROUND: Recent studies examining the interaction between the 5-HTTLPR locus in the serotonin transporter gene and life stress in predicting depression have yielded equivocal results, leading some researchers to question whether 5-HTTLPR variation indeed regulates depressive responses to stress....

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Conway CC, Slavich GM, Hammen C. Daily stress reactivity and serotonin transporter gene (5-HTTLPR) variation: internalizing responses to everyday stress as a possible transdiagnostic phenotype. Biol Mood Anxiety Disord. 2014;4(1):2doi: 10.1186/2045-5380-4-2.
Conway, C. C., Slavich, G. M., & Hammen, C. (2014). Daily stress reactivity and serotonin transporter gene (5-HTTLPR) variation: internalizing responses to everyday stress as a possible transdiagnostic phenotype. Biology of mood & anxiety disorders, 4(1), 2. https://doi.org/10.1186/2045-5380-4-2
Conway, Christopher C, et al. "Daily stress reactivity and serotonin transporter gene (5-HTTLPR) variation: internalizing responses to everyday stress as a possible transdiagnostic phenotype." Biology of mood & anxiety disorders vol. 4,1 (2014): 2. doi: https://doi.org/10.1186/2045-5380-4-2
Conway CC, Slavich GM, Hammen C. Daily stress reactivity and serotonin transporter gene (5-HTTLPR) variation: internalizing responses to everyday stress as a possible transdiagnostic phenotype. Biol Mood Anxiety Disord. 2014 Jan 24;4(1):2. doi: 10.1186/2045-5380-4-2. PMID: 24461074; PMCID: PMC3933324.
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Rating Movies and Rating the Raters Who Rate Them.

The American statistician

Zhou H, Lange K.
PMID: 20802818
Am Stat. 2009 Nov 01;63(4):297-307. doi: 10.1198/tast.2009.08278.

The movie distribution company Netflix has generated considerable buzz in the statistics community by offering a million dollar prize for improvements to its movie rating system. Among the statisticians and computer scientists who have disclosed their techniques, the emphasis...

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Zhou H, Lange K. Rating Movies and Rating the Raters Who Rate Them. Am Stat. 2009;63(4):297-307doi: 10.1198/tast.2009.08278.
Zhou, H., & Lange, K. (2009). Rating Movies and Rating the Raters Who Rate Them. The American statistician, 63(4), 297-307. https://doi.org/10.1198/tast.2009.08278
Zhou, Hua, and Lange, Kenneth. "Rating Movies and Rating the Raters Who Rate Them." The American statistician vol. 63,4 (2009): 297-307. doi: https://doi.org/10.1198/tast.2009.08278
Zhou H, Lange K. Rating Movies and Rating the Raters Who Rate Them. Am Stat. 2009 Nov 01;63(4):297-307. doi: 10.1198/tast.2009.08278. PMID: 20802818; PMCID: PMC2929029.
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Maximal information component analysis: a novel non-linear network analysis method.

Frontiers in genetics

Rau CD, Wisniewski N, Orozco LD, Bennett B, Weiss J, Lusis AJ.
PMID: 23487572
Front Genet. 2013 Mar 12;4:28. doi: 10.3389/fgene.2013.00028. eCollection 2013.

BACKGROUND: Network construction and analysis algorithms provide scientists with the ability to sift through high-throughput biological outputs, such as transcription microarrays, for small groups of genes (modules) that are relevant for further research. Most of these algorithms ignore the...

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Rau CD, Wisniewski N, Orozco LD, et al. Maximal information component analysis: a novel non-linear network analysis method. Front Genet. 2013;4:28doi: 10.3389/fgene.2013.00028.
Rau, C. D., Wisniewski, N., Orozco, L. D., Bennett, B., Weiss, J., & Lusis, A. J. (2013). Maximal information component analysis: a novel non-linear network analysis method. Frontiers in genetics, 428. https://doi.org/10.3389/fgene.2013.00028
Rau, Christoph D, et al. "Maximal information component analysis: a novel non-linear network analysis method." Frontiers in genetics vol. 4 (2013): 28. doi: https://doi.org/10.3389/fgene.2013.00028
Rau CD, Wisniewski N, Orozco LD, Bennett B, Weiss J, Lusis AJ. Maximal information component analysis: a novel non-linear network analysis method. Front Genet. 2013 Mar 12;4:28. doi: 10.3389/fgene.2013.00028. eCollection 2013. PMID: 23487572; PMCID: PMC3594742.
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Lipin-1 and lipin-3 together determine adiposity in vivo.

Molecular metabolism

Csaki LS, Dwyer JR, Li X, Nguyen MH, Dewald J, Brindley DN, Lusis AJ, Yoshinaga Y, de Jong P, Fong L, Young SG, Reue K.
PMID: 24634820
Mol Metab. 2013 Nov 28;3(2):145-54. doi: 10.1016/j.molmet.2013.11.008. eCollection 2014 Apr.

The lipin protein family of phosphatidate phosphatases has an established role in triacylglycerol synthesis and storage. Physiological roles for lipin-1 and lipin-2 have been identified, but the role of lipin-3 has remained mysterious. Using lipin single- and double-knockout models...

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Csaki LS, Dwyer JR, Li X, et al. Lipin-1 and lipin-3 together determine adiposity in vivo. Mol Metab. 2013;3(2):145-54doi: 10.1016/j.molmet.2013.11.008.
Csaki, L. S., Dwyer, J. R., Li, X., Nguyen, M. H., Dewald, J., Brindley, D. N., Lusis, A. J., Yoshinaga, Y., de Jong, P., Fong, L., Young, S. G., & Reue, K. (2014). Lipin-1 and lipin-3 together determine adiposity in vivo. Molecular metabolism, 3(2), 145-54. https://doi.org/10.1016/j.molmet.2013.11.008
Csaki, Lauren S, et al. "Lipin-1 and lipin-3 together determine adiposity in vivo." Molecular metabolism vol. 3,2 (2014): 145-54. doi: https://doi.org/10.1016/j.molmet.2013.11.008
Csaki LS, Dwyer JR, Li X, Nguyen MH, Dewald J, Brindley DN, Lusis AJ, Yoshinaga Y, de Jong P, Fong L, Young SG, Reue K. Lipin-1 and lipin-3 together determine adiposity in vivo. Mol Metab. 2013 Nov 28;3(2):145-54. doi: 10.1016/j.molmet.2013.11.008. eCollection 2014 Apr. PMID: 24634820; PMCID: PMC3953701.
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MM Algorithms For Variance Components Models.

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America

Zhou H, Hu L, Zhou J, Lange K.
PMID: 31592195
J Comput Graph Stat. 2019;28(2):350-361. doi: 10.1080/10618600.2018.1529601. Epub 2019 Mar 09.

Variance components estimation and mixed model analysis are central themes in statistics with applications in numerous scientific disciplines. Despite the best efforts of generations of statisticians and numerical analysts, maximum likelihood estimation and restricted maximum likelihood estimation of variance...

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Zhou H, Hu L, Zhou J, et al. MM Algorithms For Variance Components Models. J Comput Graph Stat. 2019;28(2):350-361doi: 10.1080/10618600.2018.1529601.
Zhou, H., Hu, L., Zhou, J., & Lange, K. (2019). MM Algorithms For Variance Components Models. Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America, 28(2), 350-361. https://doi.org/10.1080/10618600.2018.1529601
Zhou, Hua, et al. "MM Algorithms For Variance Components Models." Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America vol. 28,2 (2019): 350-361. doi: https://doi.org/10.1080/10618600.2018.1529601
Zhou H, Hu L, Zhou J, Lange K. MM Algorithms For Variance Components Models. J Comput Graph Stat. 2019;28(2):350-361. doi: 10.1080/10618600.2018.1529601. Epub 2019 Mar 09. PMID: 31592195; PMCID: PMC6779174.
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A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl.

Bioinformatics (Oxford, England)

Chu BB, Sobel EM, Wasiolek R, Ko S, Sinsheimer JS, Zhou H, Lange K.
PMID: 34289008
Bioinformatics. 2021 Jul 21; doi: 10.1093/bioinformatics/btab489. Epub 2021 Jul 21.

MOTIVATION: Current methods for genotype imputation and phasing exploit the volume of data in haplotype reference panels and rely on hidden Markov models. Existing programs all have essentially the same imputation accuracy, are computationally intensive, and generally require pre-phasing...

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Chu BB, Sobel EM, Wasiolek R, et al. A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl. Bioinformatics. 2021;doi: 10.1093/bioinformatics/btab489.
Chu, B. B., Sobel, E. M., Wasiolek, R., Ko, S., Sinsheimer, J. S., Zhou, H., & Lange, K. (2021). A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl. Bioinformatics (Oxford, England), . https://doi.org/10.1093/bioinformatics/btab489
Chu, Benjamin B, et al. "A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl." Bioinformatics (Oxford, England) vol. (2021). doi: https://doi.org/10.1093/bioinformatics/btab489
Chu BB, Sobel EM, Wasiolek R, Ko S, Sinsheimer JS, Zhou H, Lange K. A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl. Bioinformatics. 2021 Jul 21; doi: 10.1093/bioinformatics/btab489. Epub 2021 Jul 21. PMID: 34289008; PMCID: PMC8665755.
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Corrigendum: TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport.

Nature communications

Schmidts M, Hou Y, Cortés CR, Mans DA, Huber C, Boldt K, Patel M, van Reeuwijk J, Plaza JM, van Beersum SE, Yap ZM, Letteboer SJ, Taylor SP, Herridge W, Johnson CA, Scambler PJ, Ueffing M, Kayserili H, Krakow D, King SM, Beales PL, Al-Gazali L, Wicking C, Cormier-Daire V, Roepman R, Mitchison HM, Witman GB.
PMID: 27021811
Nat Commun. 2016 Mar 29;7:11270. doi: 10.1038/ncomms11270.

No abstract available.

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Schmidts M, Hou Y, Cortés CR, et al. Corrigendum: TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport. Nat Commun. 2016;7:11270doi: 10.1038/ncomms11270.
Schmidts, M., Hou, Y., Cortés, C. R., Mans, D. A., Huber, C., Boldt, K., Patel, M., van Reeuwijk, J., Plaza, J. M., van Beersum, S. E., Yap, Z. M., Letteboer, S. J., Taylor, S. P., Herridge, W., Johnson, C. A., Scambler, P. J., Ueffing, M., Kayserili, H., Krakow, D., King, S. M., Beales, P. L., Al-Gazali, L., Wicking, C., Cormier-Daire, V., Roepman, R., Mitchison, H. M., & Witman, G. B. (2016). Corrigendum: TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport. Nature communications, 711270. https://doi.org/10.1038/ncomms11270
Schmidts, Miriam, et al. "Corrigendum: TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport." Nature communications vol. 7 (2016): 11270. doi: https://doi.org/10.1038/ncomms11270
Schmidts M, Hou Y, Cortés CR, Mans DA, Huber C, Boldt K, Patel M, van Reeuwijk J, Plaza JM, van Beersum SE, Yap ZM, Letteboer SJ, Taylor SP, Herridge W, Johnson CA, Scambler PJ, Ueffing M, Kayserili H, Krakow D, King SM, Beales PL, Al-Gazali L, Wicking C, Cormier-Daire V, Roepman R, Mitchison HM, Witman GB. Corrigendum: TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport. Nat Commun. 2016 Mar 29;7:11270. doi: 10.1038/ncomms11270. PMID: 27021811; PMCID: PMC4820607.
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Showing 1 to 12 of 28 entries