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The Development of .

Frontiers in immunology

Boyle MJ, Jagannathan P, Bowen K, McIntyre TI, Vance HM, Farrington LA, Schwartz A, Nankya F, Naluwu K, Wamala S, Sikyomu E, Rek J, Greenhouse B, Arinaitwe E, Dorsey G, Kamya MR, Feeney ME.
PMID: 29097996
Front Immunol. 2017 Oct 19;8:1329. doi: 10.3389/fimmu.2017.01329. eCollection 2017.

Cytokine-producing CD4 T cells have important roles in immunity against

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Boyle MJ, Jagannathan P, Bowen K, et al. The Development of . Front Immunol. 2017;8:1329doi: 10.3389/fimmu.2017.01329.
Boyle, M. J., Jagannathan, P., Bowen, K., McIntyre, T. I., Vance, H. M., Farrington, L. A., Schwartz, A., Nankya, F., Naluwu, K., Wamala, S., Sikyomu, E., Rek, J., Greenhouse, B., Arinaitwe, E., Dorsey, G., Kamya, M. R., & Feeney, M. E. (2017). The Development of . Frontiers in immunology, 81329. https://doi.org/10.3389/fimmu.2017.01329
Boyle, Michelle J, et al. "The Development of ." Frontiers in immunology vol. 8 (2017): 1329. doi: https://doi.org/10.3389/fimmu.2017.01329
Boyle MJ, Jagannathan P, Bowen K, McIntyre TI, Vance HM, Farrington LA, Schwartz A, Nankya F, Naluwu K, Wamala S, Sikyomu E, Rek J, Greenhouse B, Arinaitwe E, Dorsey G, Kamya MR, Feeney ME. The Development of . Front Immunol. 2017 Oct 19;8:1329. doi: 10.3389/fimmu.2017.01329. eCollection 2017. PMID: 29097996; PMCID: PMC5653696.
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Impact of COVID-19 on routine malaria indicators in Uganda: An interrupted time series analysis.

Research square

Namuganga JF, Briggs J, Roh ME, Okiring J, Kisambira Y, Sserwanga A, Kapisi JA, Arinaitwe E, Ebong C, Ssewanyana I, Greenhouse B, Maiteki-Ssebuguzi C, Kamya MR, Staedke SG, Dorsey G, Nankabirwa JI.
PMID: 34426808
Res Sq. 2021 Aug 18; doi: 10.21203/rs.3.rs-819495/v1.

Background In March 2020, the government of Uganda implemented a strict lockdown policy in response to the COVID-19 pandemic. We performed an interrupted time series analysis (ITSA) to assess whether major changes in healthcare seeking behavior, malaria burden, and...

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Namuganga JF, Briggs J, Roh ME, et al. Impact of COVID-19 on routine malaria indicators in Uganda: An interrupted time series analysis. Res Sq. 2021;doi: 10.21203/rs.3.rs-819495/v1.
Namuganga, J. F., Briggs, J., Roh, M. E., Okiring, J., Kisambira, Y., Sserwanga, A., Kapisi, J. A., Arinaitwe, E., Ebong, C., Ssewanyana, I., Greenhouse, B., Maiteki-Ssebuguzi, C., Kamya, M. R., Staedke, S. G., Dorsey, G., & Nankabirwa, J. I. (2021). Impact of COVID-19 on routine malaria indicators in Uganda: An interrupted time series analysis. Research square, . https://doi.org/10.21203/rs.3.rs-819495/v1
Namuganga, Jane Frances, et al. "Impact of COVID-19 on routine malaria indicators in Uganda: An interrupted time series analysis." Research square vol. (2021). doi: https://doi.org/10.21203/rs.3.rs-819495/v1
Namuganga JF, Briggs J, Roh ME, Okiring J, Kisambira Y, Sserwanga A, Kapisi JA, Arinaitwe E, Ebong C, Ssewanyana I, Greenhouse B, Maiteki-Ssebuguzi C, Kamya MR, Staedke SG, Dorsey G, Nankabirwa JI. Impact of COVID-19 on routine malaria indicators in Uganda: An interrupted time series analysis. Res Sq. 2021 Aug 18; doi: 10.21203/rs.3.rs-819495/v1. PMID: 34426808; PMCID: PMC8382131.
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ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies.

Gates open research

Ruhamyankaka E, Brunk BP, Dorsey G, Harb OS, Helb DA, Judkins J, Kissinger JC, Lindsay B, Roos DS, San EJ, Stoeckert CJ, Zheng J, Tomko SS.
PMID: 32047873
Gates Open Res. 2020 Apr 06;3:1661. doi: 10.12688/gatesopenres.13087.2. eCollection 2019.

The concept of open data has been gaining traction as a mechanism to increase data use, ensure that data are preserved over time, and accelerate discovery. While epidemiology data sets are increasingly deposited in databases and repositories, barriers to...

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Ruhamyankaka E, Brunk BP, Dorsey G, et al. ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies. Gates Open Res. 2020;3:1661doi: 10.12688/gatesopenres.13087.2.
Ruhamyankaka, E., Brunk, B. P., Dorsey, G., Harb, O. S., Helb, D. A., Judkins, J., Kissinger, J. C., Lindsay, B., Roos, D. S., San, E. J., Stoeckert, C. J., Zheng, J., & Tomko, S. S. (2019). ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies. Gates open research, 31661. https://doi.org/10.12688/gatesopenres.13087.2
Ruhamyankaka, Emmanuel, et al. "ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies." Gates open research vol. 3 (2019): 1661. doi: https://doi.org/10.12688/gatesopenres.13087.2
Ruhamyankaka E, Brunk BP, Dorsey G, Harb OS, Helb DA, Judkins J, Kissinger JC, Lindsay B, Roos DS, San EJ, Stoeckert CJ, Zheng J, Tomko SS. ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies. Gates Open Res. 2020 Apr 06;3:1661. doi: 10.12688/gatesopenres.13087.2. eCollection 2019. PMID: 32047873; PMCID: PMC6993508.
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Heterogeneous exposure and hotspots for malaria vectors at three study sites in Uganda.

Gates open research

Kang SY, Battle KE, Gibson HS, Cooper LV, Maxwell K, Kamya M, Lindsay SW, Dorsey G, Greenhouse B, Rodriguez-Barraquer I, Reiner RCJ, Smith DL, Bisanzio D.
PMID: 30706054
Gates Open Res. 2018 Nov 13;2:32. doi: 10.12688/gatesopenres.12838.2. eCollection 2018.

No abstract available.

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Kang SY, Battle KE, Gibson HS, et al. Heterogeneous exposure and hotspots for malaria vectors at three study sites in Uganda. Gates Open Res. 2018;2:32doi: 10.12688/gatesopenres.12838.2.
Kang, S. Y., Battle, K. E., Gibson, H. S., Cooper, L. V., Maxwell, K., Kamya, M., Lindsay, S. W., Dorsey, G., Greenhouse, B., Rodriguez-Barraquer, I., Reiner, R. C. J., Smith, D. L., & Bisanzio, D. (2018). Heterogeneous exposure and hotspots for malaria vectors at three study sites in Uganda. Gates open research, 232. https://doi.org/10.12688/gatesopenres.12838.2
Kang, Su Yun, et al. "Heterogeneous exposure and hotspots for malaria vectors at three study sites in Uganda." Gates open research vol. 2 (2018): 32. doi: https://doi.org/10.12688/gatesopenres.12838.2
Kang SY, Battle KE, Gibson HS, Cooper LV, Maxwell K, Kamya M, Lindsay SW, Dorsey G, Greenhouse B, Rodriguez-Barraquer I, Reiner RCJ, Smith DL, Bisanzio D. Heterogeneous exposure and hotspots for malaria vectors at three study sites in Uganda. Gates Open Res. 2018 Nov 13;2:32. doi: 10.12688/gatesopenres.12838.2. eCollection 2018. PMID: 30706054; PMCID: PMC6350504.
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Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria.

Malaria journal

Huber JH, Johnston GL, Greenhouse B, Smith DL, Perkins TA.
PMID: 27660051
Malar J. 2016 Sep 22;15(1):490. doi: 10.1186/s12936-016-1537-6.

BACKGROUND: The serial interval is a fundamentally important quantity in infectious disease epidemiology that has numerous applications to inferring patterns of transmission from case data. Many of these applications are apropos of efforts to eliminate falciparum malaria from locations...

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Huber JH, Johnston GL, Greenhouse B, et al. Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria. Malar J. 2016;15(1):490doi: 10.1186/s12936-016-1537-6.
Huber, J. H., Johnston, G. L., Greenhouse, B., Smith, D. L., & Perkins, T. A. (2016). Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria. Malaria journal, 15(1), 490. https://doi.org/10.1186/s12936-016-1537-6
Huber, John H, et al. "Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria." Malaria journal vol. 15,1 (2016): 490. doi: https://doi.org/10.1186/s12936-016-1537-6
Huber JH, Johnston GL, Greenhouse B, Smith DL, Perkins TA. Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria. Malar J. 2016 Sep 22;15(1):490. doi: 10.1186/s12936-016-1537-6. PMID: 27660051; PMCID: PMC5034682.
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Drug susceptibility of .

The Lancet. Microbe

Tumwebaze PK, Katairo T, Okitwi M, Byaruhanga O, Orena S, Asua V, Duvalsaint M, Legac J, Chelebieva S, Ceja FG, Rasmussen SA, Conrad MD, Nsobya SL, Aydemir O, Bailey JA, Bayles BR, Rosenthal PJ, Cooper RA.
PMID: 34553183
Lancet Microbe. 2021 Sep;2(9):e441-e449. doi: 10.1016/s2666-5247(21)00085-9. Epub 2021 Jun 18.

BACKGROUND: Treatment and control of malaria depends on artemisinin-based combination therapies (ACTs) and is challenged by drug resistance, but thus far resistance to artemisinins and partner drugs has primarily occurred in southeast Asia. The aim of this study was...

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Tumwebaze PK, Katairo T, Okitwi M, et al. Drug susceptibility of . Lancet Microbe. 2021;2(9):e441-e449doi: 10.1016/s2666-5247(21)00085-9.
Tumwebaze, P. K., Katairo, T., Okitwi, M., Byaruhanga, O., Orena, S., Asua, V., Duvalsaint, M., Legac, J., Chelebieva, S., Ceja, F. G., Rasmussen, S. A., Conrad, M. D., Nsobya, S. L., Aydemir, O., Bailey, J. A., Bayles, B. R., Rosenthal, P. J., & Cooper, R. A. (2021). Drug susceptibility of . The Lancet. Microbe, 2(9), e441-e449. https://doi.org/10.1016/s2666-5247(21)00085-9
Tumwebaze, Patrick K, et al. "Drug susceptibility of ." The Lancet. Microbe vol. 2,9 (2021): e441-e449. doi: https://doi.org/10.1016/s2666-5247(21)00085-9
Tumwebaze PK, Katairo T, Okitwi M, Byaruhanga O, Orena S, Asua V, Duvalsaint M, Legac J, Chelebieva S, Ceja FG, Rasmussen SA, Conrad MD, Nsobya SL, Aydemir O, Bailey JA, Bayles BR, Rosenthal PJ, Cooper RA. Drug susceptibility of . Lancet Microbe. 2021 Sep;2(9):e441-e449. doi: 10.1016/s2666-5247(21)00085-9. Epub 2021 Jun 18. PMID: 34553183; PMCID: PMC8454895.
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Are Artemisinin-Based Combination Therapies For Malaria Beginning To Fail in Africa?.

The American journal of tropical medicine and hygiene

Rosenthal PJ.
PMID: 34491214
Am J Trop Med Hyg. 2021 Sep 07;105(4):857-858. doi: 10.4269/ajtmh.21-0797.

No abstract available.

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Rosenthal PJ. Are Artemisinin-Based Combination Therapies For Malaria Beginning To Fail in Africa?. Am J Trop Med Hyg. 2021;105(4):857-858doi: 10.4269/ajtmh.21-0797.
Rosenthal, P. J. (2021). Are Artemisinin-Based Combination Therapies For Malaria Beginning To Fail in Africa?. The American journal of tropical medicine and hygiene, 105(4), 857-858. https://doi.org/10.4269/ajtmh.21-0797
Rosenthal, Philip J. "Are Artemisinin-Based Combination Therapies For Malaria Beginning To Fail in Africa?." The American journal of tropical medicine and hygiene vol. 105,4 (2021): 857-858. doi: https://doi.org/10.4269/ajtmh.21-0797
Rosenthal PJ. Are Artemisinin-Based Combination Therapies For Malaria Beginning To Fail in Africa?. Am J Trop Med Hyg. 2021 Sep 07;105(4):857-858. doi: 10.4269/ajtmh.21-0797. PMID: 34491214; PMCID: PMC8592154.
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Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria.

Malaria journal

Gonzales SJ, Bol S, Braddom AE, Sullivan R, Reyes RA, Ssewanyana I, Eggers E, Greenhouse B, Bunnik EM.
PMID: 34758841
Malar J. 2021 Nov 10;20(1):435. doi: 10.1186/s12936-021-03970-1.

BACKGROUND: Chronic and frequently recurring infectious diseases, such as malaria, are associated with expanded populations of atypical memory B cells (MBCs). These cells are different from classical MBCs by the lack of surface markers CD21 and CD27 and increased...

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Gonzales SJ, Bol S, Braddom AE, et al. Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria. Malar J. 2021;20(1):435doi: 10.1186/s12936-021-03970-1.
Gonzales, S. J., Bol, S., Braddom, A. E., Sullivan, R., Reyes, R. A., Ssewanyana, I., Eggers, E., Greenhouse, B., & Bunnik, E. M. (2021). Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria. Malaria journal, 20(1), 435. https://doi.org/10.1186/s12936-021-03970-1
Gonzales, S Jake, et al. "Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria." Malaria journal vol. 20,1 (2021): 435. doi: https://doi.org/10.1186/s12936-021-03970-1
Gonzales SJ, Bol S, Braddom AE, Sullivan R, Reyes RA, Ssewanyana I, Eggers E, Greenhouse B, Bunnik EM. Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria. Malar J. 2021 Nov 10;20(1):435. doi: 10.1186/s12936-021-03970-1. PMID: 34758841; PMCID: PMC8579674.
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Artemether-Lumefantrine and Dihydroartemisinin-Piperaquine Exert Inverse Selective Pressure on .

Open forum infectious diseases

Taylor AR, Flegg JA, Holmes CC, Guérin PJ, Sibley CH, Conrad MD, Dorsey G, Rosenthal PJ.
PMID: 28480232
Open Forum Infect Dis. 2016 Oct 25;4(1):ofw229. doi: 10.1093/ofid/ofw229. eCollection 2017.

BACKGROUND: Altered sensitivity to multiple antimalarial drugs is mediated by polymorphisms in METHODS: We fit a haplotype frequency estimation model, which accounts for multiclonal infections, to the polymorphic RESULTS: Yearly trends showed increasing frequency estimates for haplotypes with wild...

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Taylor AR, Flegg JA, Holmes CC, et al. Artemether-Lumefantrine and Dihydroartemisinin-Piperaquine Exert Inverse Selective Pressure on . Open Forum Infect Dis. 2016;4(1):ofw229doi: 10.1093/ofid/ofw229.
Taylor, A. R., Flegg, J. A., Holmes, C. C., Guérin, P. J., Sibley, C. H., Conrad, M. D., Dorsey, G., & Rosenthal, P. J. (2017). Artemether-Lumefantrine and Dihydroartemisinin-Piperaquine Exert Inverse Selective Pressure on . Open forum infectious diseases, 4(1), ofw229. https://doi.org/10.1093/ofid/ofw229
Taylor, Aimee R, et al. "Artemether-Lumefantrine and Dihydroartemisinin-Piperaquine Exert Inverse Selective Pressure on ." Open forum infectious diseases vol. 4,1 (2017): ofw229. doi: https://doi.org/10.1093/ofid/ofw229
Taylor AR, Flegg JA, Holmes CC, Guérin PJ, Sibley CH, Conrad MD, Dorsey G, Rosenthal PJ. Artemether-Lumefantrine and Dihydroartemisinin-Piperaquine Exert Inverse Selective Pressure on . Open Forum Infect Dis. 2016 Oct 25;4(1):ofw229. doi: 10.1093/ofid/ofw229. eCollection 2017. PMID: 28480232; PMCID: PMC5413987.
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Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake.

PLoS currents

Wilson R, Zu Erbach-Schoenberg E, Albert M, Power D, Tudge S, Gonzalez M, Guthrie S, Chamberlain H, Brooks C, Hughes C, Pitonakova L, Buckee C, Lu X, Wetter E, Tatem A, Bengtsson L.
PMID: 26981327
PLoS Curr. 2016 Feb 24;8. doi: 10.1371/currents.dis.d073fbece328e4c39087bc086d694b5c.

INTRODUCTION: Sudden impact disasters often result in the displacement of large numbers of people. These movements can occur prior to events, due to early warning messages, or take place post-event due to damages to shelters and livelihoods as well...

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Wilson R, Zu Erbach-Schoenberg E, Albert M, et al. Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake. PLoS Curr. 2016;8doi: 10.1371/currents.dis.d073fbece328e4c39087bc086d694b5c.
Wilson, R., Zu Erbach-Schoenberg, E., Albert, M., Power, D., Tudge, S., Gonzalez, M., Guthrie, S., Chamberlain, H., Brooks, C., Hughes, C., Pitonakova, L., Buckee, C., Lu, X., Wetter, E., Tatem, A., & Bengtsson, L. (2016). Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake. PLoS currents, 8. https://doi.org/10.1371/currents.dis.d073fbece328e4c39087bc086d694b5c
Wilson, Robin, et al. "Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake." PLoS currents vol. 8 (2016). doi: https://doi.org/10.1371/currents.dis.d073fbece328e4c39087bc086d694b5c
Wilson R, Zu Erbach-Schoenberg E, Albert M, Power D, Tudge S, Gonzalez M, Guthrie S, Chamberlain H, Brooks C, Hughes C, Pitonakova L, Buckee C, Lu X, Wetter E, Tatem A, Bengtsson L. Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake. PLoS Curr. 2016 Feb 24;8. doi: 10.1371/currents.dis.d073fbece328e4c39087bc086d694b5c. PMID: 26981327; PMCID: PMC4779046.
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Mapping Malaria Risk in Low Transmission Settings: Challenges and Opportunities.

Trends in parasitology

Sturrock HJW, Bennett AF, Midekisa A, Gosling RD, Gething PW, Greenhouse B.
PMID: 27238200
Trends Parasitol. 2016 Aug;32(8):635-645. doi: 10.1016/j.pt.2016.05.001. Epub 2016 May 26.

As malaria transmission declines, it becomes increasingly focal and prone to outbreaks. Understanding and predicting patterns of transmission risk becomes an important component of an effective elimination campaign, allowing limited resources for control and elimination to be targeted cost-effectively....

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Sturrock HJW, Bennett AF, Midekisa A, et al. Mapping Malaria Risk in Low Transmission Settings: Challenges and Opportunities. Trends Parasitol. 2016;32(8):635-645doi: 10.1016/j.pt.2016.05.001.
Sturrock, H. J. W., Bennett, A. F., Midekisa, A., Gosling, R. D., Gething, P. W., & Greenhouse, B. (2016). Mapping Malaria Risk in Low Transmission Settings: Challenges and Opportunities. Trends in parasitology, 32(8), 635-645. https://doi.org/10.1016/j.pt.2016.05.001
Sturrock, Hugh J W, et al. "Mapping Malaria Risk in Low Transmission Settings: Challenges and Opportunities." Trends in parasitology vol. 32,8 (2016): 635-645. doi: https://doi.org/10.1016/j.pt.2016.05.001
Sturrock HJW, Bennett AF, Midekisa A, Gosling RD, Gething PW, Greenhouse B. Mapping Malaria Risk in Low Transmission Settings: Challenges and Opportunities. Trends Parasitol. 2016 Aug;32(8):635-645. doi: 10.1016/j.pt.2016.05.001. Epub 2016 May 26. PMID: 27238200.
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Fitness Consequences of .

Antimicrobial agents and chemotherapy

Ochong E, Tumwebaze PK, Byaruhanga O, Greenhouse B, Rosenthal PJ.
PMID: 23796921
Antimicrob Agents Chemother. 2013 Sep;57(9):4245-4251. doi: 10.1128/AAC.00161-13. Epub 2013 Jun 24.

Polymorphisms in the

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Ochong E, Tumwebaze PK, Byaruhanga O, et al. Fitness Consequences of . Antimicrob Agents Chemother. 2013;57(9):4245-4251doi: 10.1128/AAC.00161-13.
Ochong, E., Tumwebaze, P. K., Byaruhanga, O., Greenhouse, B., & Rosenthal, P. J. (2013). Fitness Consequences of . Antimicrobial agents and chemotherapy, 57(9), 4245-4251. https://doi.org/10.1128/AAC.00161-13
Ochong, Edwin, et al. "Fitness Consequences of ." Antimicrobial agents and chemotherapy vol. 57,9 (2013): 4245-4251. doi: https://doi.org/10.1128/AAC.00161-13
Ochong E, Tumwebaze PK, Byaruhanga O, Greenhouse B, Rosenthal PJ. Fitness Consequences of . Antimicrob Agents Chemother. 2013 Sep;57(9):4245-4251. doi: 10.1128/AAC.00161-13. Epub 2013 Jun 24. PMID: 23796921; PMCID: PMC3754360.
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