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Employing ProteoWizard to Convert Raw Mass Spectrometry Data.

Current protocols in bioinformatics

Holman JD, Tabb DL, Mallick P.
PMID: 24939128
Curr Protoc Bioinformatics. 2014 Jun 17;46:13.24.1-9. doi: 10.1002/0471250953.bi1324s46.

After raw data have been captured by mass spectrometers in biological LC-MS/MS experiments, they must be converted from vendor-specific binary files to open-format files for manipulation by most software. This protocol details the use of ProteoWizard software for this...

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Holman JD, Tabb DL, Mallick P. Employing ProteoWizard to Convert Raw Mass Spectrometry Data. Curr Protoc Bioinformatics. 2014;46:13.24.1-9doi: 10.1002/0471250953.bi1324s46.
Holman, J. D., Tabb, D. L., & Mallick, P. (2014). Employing ProteoWizard to Convert Raw Mass Spectrometry Data. Current protocols in bioinformatics, 4613.24.1-9. https://doi.org/10.1002/0471250953.bi1324s46
Holman, Jerry D, et al. "Employing ProteoWizard to Convert Raw Mass Spectrometry Data." Current protocols in bioinformatics vol. 46 (2014): 13.24.1-9. doi: https://doi.org/10.1002/0471250953.bi1324s46
Holman JD, Tabb DL, Mallick P. Employing ProteoWizard to Convert Raw Mass Spectrometry Data. Curr Protoc Bioinformatics. 2014 Jun 17;46:13.24.1-9. doi: 10.1002/0471250953.bi1324s46. PMID: 24939128; PMCID: PMC4113728.
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Deciphering tumor heterogeneity from FFPE tissues: Its promise and challenges.

Molecular & cellular oncology

Simmons AJ, Lau KS.
PMID: 28197533
Mol Cell Oncol. 2016 Nov 18;4(1):e1260191. doi: 10.1080/23723556.2016.1260191. eCollection 2017.

An impediment to the understanding of cancer is the heterogeneous nature of cell populations within a tumor microenvironment. We reported a method to query protein signaling in single epithelial cells from formalin-fixed paraffin-embedded (FFPE) colorectal cancer tissues. Here, we...

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Simmons AJ, Lau KS. Deciphering tumor heterogeneity from FFPE tissues: Its promise and challenges. Mol Cell Oncol. 2016;4(1):e1260191doi: 10.1080/23723556.2016.1260191.
Simmons, A. J., & Lau, K. S. (2017). Deciphering tumor heterogeneity from FFPE tissues: Its promise and challenges. Molecular & cellular oncology, 4(1), e1260191. https://doi.org/10.1080/23723556.2016.1260191
Simmons, Alan J, and Lau, Ken S. "Deciphering tumor heterogeneity from FFPE tissues: Its promise and challenges." Molecular & cellular oncology vol. 4,1 (2017): e1260191. doi: https://doi.org/10.1080/23723556.2016.1260191
Simmons AJ, Lau KS. Deciphering tumor heterogeneity from FFPE tissues: Its promise and challenges. Mol Cell Oncol. 2016 Nov 18;4(1):e1260191. doi: 10.1080/23723556.2016.1260191. eCollection 2017. PMID: 28197533; PMCID: PMC5286981.
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Methods, Tools and Current Perspectives in Proteogenomics.

Molecular & cellular proteomics : MCP

Ruggles KV, Krug K, Wang X, Clauser KR, Wang J, Payne SH, Fenyö D, Zhang B, Mani DR.
PMID: 28456751
Mol Cell Proteomics. 2017 Jun;16(6):959-981. doi: 10.1074/mcp.MR117.000024. Epub 2017 Apr 29.

With combined technological advancements in high-throughput next-generation sequencing and deep mass spectrometry-based proteomics, proteogenomics,

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Ruggles KV, Krug K, Wang X, et al. Methods, Tools and Current Perspectives in Proteogenomics. Mol Cell Proteomics. 2017;16(6):959-981doi: 10.1074/mcp.MR117.000024.
Ruggles, K. V., Krug, K., Wang, X., Clauser, K. R., Wang, J., Payne, S. H., Fenyö, D., Zhang, B., & Mani, D. R. (2017). Methods, Tools and Current Perspectives in Proteogenomics. Molecular & cellular proteomics : MCP, 16(6), 959-981. https://doi.org/10.1074/mcp.MR117.000024
Ruggles, Kelly V, et al. "Methods, Tools and Current Perspectives in Proteogenomics." Molecular & cellular proteomics : MCP vol. 16,6 (2017): 959-981. doi: https://doi.org/10.1074/mcp.MR117.000024
Ruggles KV, Krug K, Wang X, Clauser KR, Wang J, Payne SH, Fenyö D, Zhang B, Mani DR. Methods, Tools and Current Perspectives in Proteogenomics. Mol Cell Proteomics. 2017 Jun;16(6):959-981. doi: 10.1074/mcp.MR117.000024. Epub 2017 Apr 29. PMID: 28456751; PMCID: PMC5461547.
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Showing 1 to 3 of 3 entries