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Gene mapping.

Current opinion in biotechnology

Lathrop GM, Cherif D, Julier C, James M.
PMID: 1367854
Curr Opin Biotechnol. 1990 Dec;1(2):172-9. doi: 10.1016/0958-1669(90)90027-i.

No abstract available.

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Lathrop GM, Cherif D, Julier C, et al. Gene mapping. Curr Opin Biotechnol. 1990;1(2):172-9doi: 10.1016/0958-1669(90)90027-i.
Lathrop, G. M., Cherif, D., Julier, C., & James, M. (1990). Gene mapping. Current opinion in biotechnology, 1(2), 172-9. https://doi.org/10.1016/0958-1669(90)90027-i
Lathrop, G M, et al. "Gene mapping." Current opinion in biotechnology vol. 1,2 (1990): 172-9. doi: https://doi.org/10.1016/0958-1669(90)90027-i
Lathrop GM, Cherif D, Julier C, James M. Gene mapping. Curr Opin Biotechnol. 1990 Dec;1(2):172-9. doi: 10.1016/0958-1669(90)90027-i. PMID: 1367854.
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[Fine mapping of complex disease susceptibility loci].

Yi chuan = Hereditas

Song Q, Zhang H, Ma Y, Zhou G.
PMID: 24846913
Yi Chuan. 2014 Jan;36(1):2-10. doi: 10.3724/sp.j.1005.2014.00002.

Genome-wide association studies (GWAS) using single nucleotide polymorphism (SNP) markers have identified more than 3800 susceptibility loci for more than 660 diseases or traits. However, the most significantly associated variants or causative variants in these loci and their biological...

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Song Q, Zhang H, Ma Y, et al. [Fine mapping of complex disease susceptibility loci]. Yi Chuan. 2014;36(1):2-10doi: 10.3724/sp.j.1005.2014.00002.
Song, Q., Zhang, H., Ma, Y., & Zhou, G. (2014). [Fine mapping of complex disease susceptibility loci]. Yi chuan = Hereditas, 36(1), 2-10. https://doi.org/10.3724/sp.j.1005.2014.00002
Song, Qingfeng, et al. "[Fine mapping of complex disease susceptibility loci]." Yi chuan = Hereditas vol. 36,1 (2014): 2-10. doi: https://doi.org/10.3724/sp.j.1005.2014.00002
Song Q, Zhang H, Ma Y, Zhou G. [Fine mapping of complex disease susceptibility loci]. Yi Chuan. 2014 Jan;36(1):2-10. doi: 10.3724/sp.j.1005.2014.00002. Chinese. PMID: 24846913.
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Mapsnp: an R package to plot a genomic map for single nucleotide polymorphisms.

PloS one

Zhang F, Xu Y, Cao H, Jin C, Cheng Z, Wang G, Shugart YY.
PMID: 25853637
PLoS One. 2015 Apr 08;10(4):e0123609. doi: 10.1371/journal.pone.0123609. eCollection 2015.

Single-nucleotide polymorphism (SNP) is one of the most common sources of genetic variations of the genome. Currently, SNPs are a main target for most genetic association studies. Visualizing genomic coordinates of SNPs, including their physical location relative to their...

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Zhang F, Xu Y, Cao H, et al. Mapsnp: an R package to plot a genomic map for single nucleotide polymorphisms. PLoS One. 2015;10(4):e0123609doi: 10.1371/journal.pone.0123609.
Zhang, F., Xu, Y., Cao, H., Jin, C., Cheng, Z., Wang, G., & Shugart, Y. Y. (2015). Mapsnp: an R package to plot a genomic map for single nucleotide polymorphisms. PloS one, 10(4), e0123609. https://doi.org/10.1371/journal.pone.0123609
Zhang, Fuquan, et al. "Mapsnp: an R package to plot a genomic map for single nucleotide polymorphisms." PloS one vol. 10,4 (2015): e0123609. doi: https://doi.org/10.1371/journal.pone.0123609
Zhang F, Xu Y, Cao H, Jin C, Cheng Z, Wang G, Shugart YY. Mapsnp: an R package to plot a genomic map for single nucleotide polymorphisms. PLoS One. 2015 Apr 08;10(4):e0123609. doi: 10.1371/journal.pone.0123609. eCollection 2015. PMID: 25853637; PMCID: PMC4390227.
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Discerning combining ability loci for divergent environments using chromosome segment substitution lines (CSSLs) in pearl millet.

PloS one

Basava RK, Hash CT, Mahendrakar MD, Kishor P B K, Satyavathi CT, Kumar S, Singh RB, Yadav RS, Gupta R, Srivastava RK.
PMID: 31461465
PLoS One. 2019 Aug 28;14(8):e0218916. doi: 10.1371/journal.pone.0218916. eCollection 2019.

Pearl millet is an important crop for arid and semi-arid regions of the world. Genomic regions associated with combining ability for yield-related traits under irrigated and drought conditions are useful in heterosis breeding programs. Chromosome segment substitution lines (CSSLs)...

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Basava RK, Hash CT, Mahendrakar MD, et al. Discerning combining ability loci for divergent environments using chromosome segment substitution lines (CSSLs) in pearl millet. PLoS One. 2019;14(8):e0218916doi: 10.1371/journal.pone.0218916.
Basava, R. K., Hash, C. T., Mahendrakar, M. D., Kishor P B, K., Satyavathi, C. T., Kumar, S., Singh, R. B., Yadav, R. S., Gupta, R., & Srivastava, R. K. (2019). Discerning combining ability loci for divergent environments using chromosome segment substitution lines (CSSLs) in pearl millet. PloS one, 14(8), e0218916. https://doi.org/10.1371/journal.pone.0218916
Basava, Ramana Kumari, et al. "Discerning combining ability loci for divergent environments using chromosome segment substitution lines (CSSLs) in pearl millet." PloS one vol. 14,8 (2019): e0218916. doi: https://doi.org/10.1371/journal.pone.0218916
Basava RK, Hash CT, Mahendrakar MD, Kishor P B K, Satyavathi CT, Kumar S, Singh RB, Yadav RS, Gupta R, Srivastava RK. Discerning combining ability loci for divergent environments using chromosome segment substitution lines (CSSLs) in pearl millet. PLoS One. 2019 Aug 28;14(8):e0218916. doi: 10.1371/journal.pone.0218916. eCollection 2019. PMID: 31461465; PMCID: PMC6713397.
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Finding invisible quantitative trait loci with missing data.

Plant biotechnology journal

Gabur I, Chawla HS, Liu X, Kumar V, Faure S, von Tiedemann A, Jestin C, Dryzska E, Volkmann S, Breuer F, Delourme R, Snowdon R, Obermeier C.
PMID: 29729219
Plant Biotechnol J. 2018 Dec;16(12):2102-2112. doi: 10.1111/pbi.12942. Epub 2018 May 28.

Evolutionary processes during plant polyploidization and speciation have led to extensive presence-absence variation (PAV) in crop genomes, and there is increasing evidence that PAV associates with important traits. Today, high-resolution genetic analysis in major crops frequently implements simple, cost-effective,...

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Gabur I, Chawla HS, Liu X, et al. Finding invisible quantitative trait loci with missing data. Plant Biotechnol J. 2018;16(12):2102-2112doi: 10.1111/pbi.12942.
Gabur, I., Chawla, H. S., Liu, X., Kumar, V., Faure, S., von Tiedemann, A., Jestin, C., Dryzska, E., Volkmann, S., Breuer, F., Delourme, R., Snowdon, R., & Obermeier, C. (2018). Finding invisible quantitative trait loci with missing data. Plant biotechnology journal, 16(12), 2102-2112. https://doi.org/10.1111/pbi.12942
Gabur, Iulian, et al. "Finding invisible quantitative trait loci with missing data." Plant biotechnology journal vol. 16,12 (2018): 2102-2112. doi: https://doi.org/10.1111/pbi.12942
Gabur I, Chawla HS, Liu X, Kumar V, Faure S, von Tiedemann A, Jestin C, Dryzska E, Volkmann S, Breuer F, Delourme R, Snowdon R, Obermeier C. Finding invisible quantitative trait loci with missing data. Plant Biotechnol J. 2018 Dec;16(12):2102-2112. doi: 10.1111/pbi.12942. Epub 2018 May 28. PMID: 29729219; PMCID: PMC6230954.
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R/qtlcharts: interactive graphics for quantitative trait locus mapping.

Genetics

Broman KW.
PMID: 25527287
Genetics. 2015 Feb;199(2):359-61. doi: 10.1534/genetics.114.172742. Epub 2014 Dec 18.

Every data visualization can be improved with some level of interactivity. Interactive graphics hold particular promise for the exploration of high-dimensional data. R/qtlcharts is an R package to create interactive graphics for experiments to map quantitative trait loci (QTL)...

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Broman KW. R/qtlcharts: interactive graphics for quantitative trait locus mapping. Genetics. 2014;199(2):359-61doi: 10.1534/genetics.114.172742.
Broman, K. W. (2015). R/qtlcharts: interactive graphics for quantitative trait locus mapping. Genetics, 199(2), 359-61. https://doi.org/10.1534/genetics.114.172742
Broman, Karl W. "R/qtlcharts: interactive graphics for quantitative trait locus mapping." Genetics vol. 199,2 (2015): 359-61. doi: https://doi.org/10.1534/genetics.114.172742
Broman KW. R/qtlcharts: interactive graphics for quantitative trait locus mapping. Genetics. 2015 Feb;199(2):359-61. doi: 10.1534/genetics.114.172742. Epub 2014 Dec 18. PMID: 25527287; PMCID: PMC4317647.
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Generating linkage mapping files from Affymetrix SNP chip data.

Bioinformatics (Oxford, England)

Bahlo M, Bromhead CJ.
PMID: 19435744
Bioinformatics. 2009 Aug 01;25(15):1961-2. doi: 10.1093/bioinformatics/btp313. Epub 2009 May 12.

SUMMARY: LINKDATAGEN is a perl tool that generates linkage mapping input files for five different linkage mapping tools using data from all 11 HAPMAP Phase III populations. It provides rudimentary error checks and is easily amended for personal linkage...

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Bahlo M, Bromhead CJ. Generating linkage mapping files from Affymetrix SNP chip data. Bioinformatics. 2009;25(15):1961-2doi: 10.1093/bioinformatics/btp313.
Bahlo, M., & Bromhead, C. J. (2009). Generating linkage mapping files from Affymetrix SNP chip data. Bioinformatics (Oxford, England), 25(15), 1961-2. https://doi.org/10.1093/bioinformatics/btp313
Bahlo, M, and Bromhead, C J. "Generating linkage mapping files from Affymetrix SNP chip data." Bioinformatics (Oxford, England) vol. 25,15 (2009): 1961-2. doi: https://doi.org/10.1093/bioinformatics/btp313
Bahlo M, Bromhead CJ. Generating linkage mapping files from Affymetrix SNP chip data. Bioinformatics. 2009 Aug 01;25(15):1961-2. doi: 10.1093/bioinformatics/btp313. Epub 2009 May 12. PMID: 19435744.
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Genomic mismatch scanning for the mapping of genetic traits.

Methods in molecular biology (Clifton, N.J.)

Mirzayans F, Walter MA.
PMID: 11462847
Methods Mol Biol. 2001;175:37-46. doi: 10.1385/1-59259-235-X:037.

No abstract available.

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Mirzayans F, Walter MA. Genomic mismatch scanning for the mapping of genetic traits. Methods Mol Biol. 2001;175:37-46doi: 10.1385/1-59259-235-X:037.
Mirzayans, F., & Walter, M. A. (2001). Genomic mismatch scanning for the mapping of genetic traits. Methods in molecular biology (Clifton, N.J.), 17537-46. https://doi.org/10.1385/1-59259-235-X:037
Mirzayans, F, and Walter, M A. "Genomic mismatch scanning for the mapping of genetic traits." Methods in molecular biology (Clifton, N.J.) vol. 175 (2001): 37-46. doi: https://doi.org/10.1385/1-59259-235-X:037
Mirzayans F, Walter MA. Genomic mismatch scanning for the mapping of genetic traits. Methods Mol Biol. 2001;175:37-46. doi: 10.1385/1-59259-235-X:037. PMID: 11462847.
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[Genetic mapping].

Ugeskrift for laeger

Nørby S.
PMID: 11014148
Ugeskr Laeger. 2000 Sep 18;162(38):5102-3.

No abstract available.

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Nørby S. Genetiske mappemaend. [Genetic mapping]. Ugeskr Laeger. 2000;162(38):5102-3
Nørby, S. (2000). Genetiske mappemaend. [Genetic mapping]. Ugeskrift for laeger, 162(38), 5102-3.
Nørby, S. "Genetiske mappemaend." [Genetic mapping]. Ugeskrift for laeger vol. 162,38 (2000): 5102-3.
Nørby S. Genetiske mappemaend. [Genetic mapping]. Ugeskr Laeger. 2000 Sep 18;162(38):5102-3. Danish. PMID: 11014148.
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Channeling DNA for optical mapping.

Nature biotechnology

Michaeli Y, Ebenstein Y.
PMID: 22871713
Nat Biotechnol. 2012 Aug;30(8):762-3. doi: 10.1038/nbt.2324.

No abstract available.

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Michaeli Y, Ebenstein Y. Channeling DNA for optical mapping. Nat Biotechnol. 2012;30(8):762-3doi: 10.1038/nbt.2324.
Michaeli, Y., & Ebenstein, Y. (2012). Channeling DNA for optical mapping. Nature biotechnology, 30(8), 762-3. https://doi.org/10.1038/nbt.2324
Michaeli, Yael, and Ebenstein, Yuval. "Channeling DNA for optical mapping." Nature biotechnology vol. 30,8 (2012): 762-3. doi: https://doi.org/10.1038/nbt.2324
Michaeli Y, Ebenstein Y. Channeling DNA for optical mapping. Nat Biotechnol. 2012 Aug;30(8):762-3. doi: 10.1038/nbt.2324. PMID: 22871713.
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Reporting of race in genome and exome sequencing studies of cancer: a scoping review of the literature.

Genetics in medicine : official journal of the American College of Medical Genetics

Nugent A, Conatser KR, Turner LL, Nugent JT, Sarino EMB, Ricks-Santi LJ.
PMID: 31160752
Genet Med. 2019 Dec;21(12):2676-2680. doi: 10.1038/s41436-019-0558-2. Epub 2019 Jun 04.

PURPOSE: Minorities are often underrepresented in clinical cancer research yet the frequency of reporting of race in genomic sequencing studies of cancer is unknown. This scoping review determines the rate at which race is reported as a demographic variable,...

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Nugent A, Conatser KR, Turner LL, et al. Reporting of race in genome and exome sequencing studies of cancer: a scoping review of the literature. Genet Med. 2019;21(12):2676-2680doi: 10.1038/s41436-019-0558-2.
Nugent, A., Conatser, K. R., Turner, L. L., Nugent, J. T., Sarino, E. M. B., & Ricks-Santi, L. J. (2019). Reporting of race in genome and exome sequencing studies of cancer: a scoping review of the literature. Genetics in medicine : official journal of the American College of Medical Genetics, 21(12), 2676-2680. https://doi.org/10.1038/s41436-019-0558-2
Nugent, Adrienne, et al. "Reporting of race in genome and exome sequencing studies of cancer: a scoping review of the literature." Genetics in medicine : official journal of the American College of Medical Genetics vol. 21,12 (2019): 2676-2680. doi: https://doi.org/10.1038/s41436-019-0558-2
Nugent A, Conatser KR, Turner LL, Nugent JT, Sarino EMB, Ricks-Santi LJ. Reporting of race in genome and exome sequencing studies of cancer: a scoping review of the literature. Genet Med. 2019 Dec;21(12):2676-2680. doi: 10.1038/s41436-019-0558-2. Epub 2019 Jun 04. PMID: 31160752; PMCID: PMC6891161.
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Multipoint genomic scanning for quantitative loci: effects of map density, sibship size and computational approach.

European journal of human genetics : EJHG

Goldgar DE, Shugart YY.
PMID: 10196691
Eur J Hum Genet. 1999 Feb-Mar;7(2):103-9. doi: 10.1038/sj.ejhg.5200280.

Multipoint interval mapping (MIM) and the MAPMAKER/SIBS program (M/S) are two methods of mapping quantitative loci by examining identity by descent (IBD) sharing in a region spanned by multiple microsatellite DNA markers. For the purpose of comparison, we simulated...

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Goldgar DE, Shugart YY. Multipoint genomic scanning for quantitative loci: effects of map density, sibship size and computational approach. Eur J Hum Genet. 1999;7(2):103-9doi: 10.1038/sj.ejhg.5200280.
Goldgar, D. E., & Shugart, Y. Y. (1999). Multipoint genomic scanning for quantitative loci: effects of map density, sibship size and computational approach. European journal of human genetics : EJHG, 7(2), 103-9. https://doi.org/10.1038/sj.ejhg.5200280
Goldgar, D E, and Shugart, Y Y. "Multipoint genomic scanning for quantitative loci: effects of map density, sibship size and computational approach." European journal of human genetics : EJHG vol. 7,2 (1999): 103-9. doi: https://doi.org/10.1038/sj.ejhg.5200280
Goldgar DE, Shugart YY. Multipoint genomic scanning for quantitative loci: effects of map density, sibship size and computational approach. Eur J Hum Genet. 1999 Feb-Mar;7(2):103-9. doi: 10.1038/sj.ejhg.5200280. PMID: 10196691.
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Showing 1 to 12 of 19 entries