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Showing 1 to 7 of 7 entries
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Chromatin immunoprecipitation assay.

BioTechniques

Das PM, Ramachandran K, vanWert J, Singal R.
PMID: 15597545
Biotechniques. 2004 Dec;37(6):961-9. doi: 10.2144/04376RV01.

Association between proteins and DNA is crucial for many vital cellular functions such as gene transcription, DNA replication and recombination, repair, segregation, chromosomal stability, cell cycle progression, and epigenetic silencing. It is important to know the genomic targets of...

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Das PM, Ramachandran K, vanWert J, et al. Chromatin immunoprecipitation assay. Biotechniques. 2004;37(6):961-9doi: 10.2144/04376RV01.
Das, P. M., Ramachandran, K., vanWert, J., & Singal, R. (2004). Chromatin immunoprecipitation assay. BioTechniques, 37(6), 961-9. https://doi.org/10.2144/04376RV01
Das, Partha M, et al. "Chromatin immunoprecipitation assay." BioTechniques vol. 37,6 (2004): 961-9. doi: https://doi.org/10.2144/04376RV01
Das PM, Ramachandran K, vanWert J, Singal R. Chromatin immunoprecipitation assay. Biotechniques. 2004 Dec;37(6):961-9. doi: 10.2144/04376RV01. PMID: 15597545.
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'Screw-cap' clamp loader proteins that thread.

Nature structural & molecular biology

Zhuang Z, Spiering MM, Berdis AJ, Trakselis MA, Benkovic SJ.
PMID: 15221017
Nat Struct Mol Biol. 2004 Jul;11(7):580-1. doi: 10.1038/nsmb0704-580.

No abstract available.

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Zhuang Z, Spiering MM, Berdis AJ, et al. 'Screw-cap' clamp loader proteins that thread. Nat Struct Mol Biol. 2004;11(7):580-1doi: 10.1038/nsmb0704-580.
Zhuang, Z., Spiering, M. M., Berdis, A. J., Trakselis, M. A., & Benkovic, S. J. (2004). 'Screw-cap' clamp loader proteins that thread. Nature structural & molecular biology, 11(7), 580-1. https://doi.org/10.1038/nsmb0704-580
Zhuang, Zhihao, et al. "'Screw-cap' clamp loader proteins that thread." Nature structural & molecular biology vol. 11,7 (2004): 580-1. doi: https://doi.org/10.1038/nsmb0704-580
Zhuang Z, Spiering MM, Berdis AJ, Trakselis MA, Benkovic SJ. 'Screw-cap' clamp loader proteins that thread. Nat Struct Mol Biol. 2004 Jul;11(7):580-1. doi: 10.1038/nsmb0704-580. PMID: 15221017.
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[A new dementia group caused by TDP-43 abnormality].

Seishin shinkeigaku zasshi = Psychiatria et neurologia Japonica

Arai T, Hosokawa M, Hasegawa M, Akiyama H, Asada T.
PMID: 21815469
Seishin Shinkeigaku Zasshi. 2011;113(6):574-83.

The TAR DNA-binding protein Mr 43 kDa (TDP-43) is a major component of the tau-negative and ubiquitin-positive inclusions that characterize amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration, which is now referred to as FTLD-TDP. Concurrent TDP-43 pathology has...

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Arai T, Hosokawa M, Hasegawa M, et al. [A new dementia group caused by TDP-43 abnormality]. Seishin Shinkeigaku Zasshi. 2011;113(6):574-83
Arai, T., Hosokawa, M., Hasegawa, M., Akiyama, H., & Asada, T. (2011). [A new dementia group caused by TDP-43 abnormality]. Seishin shinkeigaku zasshi = Psychiatria et neurologia Japonica, 113(6), 574-83.
Arai, Tetsuaki, et al. "[A new dementia group caused by TDP-43 abnormality]." Seishin shinkeigaku zasshi = Psychiatria et neurologia Japonica vol. 113,6 (2011): 574-83.
Arai T, Hosokawa M, Hasegawa M, Akiyama H, Asada T. [A new dementia group caused by TDP-43 abnormality]. Seishin Shinkeigaku Zasshi. 2011;113(6):574-83. Japanese. PMID: 21815469.
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High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins.

Biopolymers

Chemla YR.
PMID: 27225537
Biopolymers. 2016 Oct;105(10):704-14. doi: 10.1002/bip.22880.

Optical tweezers have become a powerful tool to investigate nucleic-acid processing proteins at the single-molecule level. Recent advances in this technique have now enabled measurements resolving the smallest units of molecular motion, on the scale of a single base...

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Chemla YR. High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins. Biopolymers. 2016;105(10):704-14doi: 10.1002/bip.22880.
Chemla, Y. R. (2016). High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins. Biopolymers, 105(10), 704-14. https://doi.org/10.1002/bip.22880
Chemla, Yann R. "High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins." Biopolymers vol. 105,10 (2016): 704-14. doi: https://doi.org/10.1002/bip.22880
Chemla YR. High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins. Biopolymers. 2016 Oct;105(10):704-14. doi: 10.1002/bip.22880. PMID: 27225537.
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What a 'Ku'incidence!: parallel discoveries of a new DNA repair factor.

Cell death and differentiation

Mistrik M, Bartek J.
PMID: 25941165
Cell Death Differ. 2015 Jun;22(6):888-9. doi: 10.1038/cdd.2015.32.

No abstract available.

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Mistrik M, Bartek J. What a 'Ku'incidence!: parallel discoveries of a new DNA repair factor. Cell Death Differ. 2015;22(6):888-9doi: 10.1038/cdd.2015.32.
Mistrik, M., & Bartek, J. (2015). What a 'Ku'incidence!: parallel discoveries of a new DNA repair factor. Cell death and differentiation, 22(6), 888-9. https://doi.org/10.1038/cdd.2015.32
Mistrik, M, and Bartek, J. "What a 'Ku'incidence!: parallel discoveries of a new DNA repair factor." Cell death and differentiation vol. 22,6 (2015): 888-9. doi: https://doi.org/10.1038/cdd.2015.32
Mistrik M, Bartek J. What a 'Ku'incidence!: parallel discoveries of a new DNA repair factor. Cell Death Differ. 2015 Jun;22(6):888-9. doi: 10.1038/cdd.2015.32. PMID: 25941165; PMCID: PMC4423193.
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Computational analysis of protein-DNA interactions from ChIP-seq data.

Methods in molecular biology (Clifton, N.J.)

Rougemont J, Naef F.
PMID: 21938632
Methods Mol Biol. 2012;786:263-73. doi: 10.1007/978-1-61779-292-2_16.

Chromatin immunoprecipitation experiments followed by ultra-high-throughput sequencing (ChIP-seq) is becoming the method of choice to identify transcription factor binding sites in prokaryotes and eukaryotes in vivo. Here, we review the computational steps that are necessary for analyzing the sequenced...

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Rougemont J, Naef F. Computational analysis of protein-DNA interactions from ChIP-seq data. Methods Mol Biol. 2012;786:263-73doi: 10.1007/978-1-61779-292-2_16.
Rougemont, J., & Naef, F. (2012). Computational analysis of protein-DNA interactions from ChIP-seq data. Methods in molecular biology (Clifton, N.J.), 786263-73. https://doi.org/10.1007/978-1-61779-292-2_16
Rougemont, Jacques, and Naef, Felix. "Computational analysis of protein-DNA interactions from ChIP-seq data." Methods in molecular biology (Clifton, N.J.) vol. 786 (2012): 263-73. doi: https://doi.org/10.1007/978-1-61779-292-2_16
Rougemont J, Naef F. Computational analysis of protein-DNA interactions from ChIP-seq data. Methods Mol Biol. 2012;786:263-73. doi: 10.1007/978-1-61779-292-2_16. PMID: 21938632.
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Editorial: Single-molecule studies of DNA-protein interactions collection 2021.

Nucleic acids research

Bianco PR, Sale JE, Reyes-Lamothe R.
PMID: 34153108
Nucleic Acids Res. 2021 Jun 21;49(11):6005-6006. doi: 10.1093/nar/gkab497.

No abstract available.

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Bianco PR, Sale JE, Reyes-Lamothe R. Editorial: Single-molecule studies of DNA-protein interactions collection 2021. Nucleic Acids Res. 2021;49(11):6005-6006doi: 10.1093/nar/gkab497.
Bianco, P. R., Sale, J. E., & Reyes-Lamothe, R. (2021). Editorial: Single-molecule studies of DNA-protein interactions collection 2021. Nucleic acids research, 49(11), 6005-6006. https://doi.org/10.1093/nar/gkab497
Bianco, Piero R, et al. "Editorial: Single-molecule studies of DNA-protein interactions collection 2021." Nucleic acids research vol. 49,11 (2021): 6005-6006. doi: https://doi.org/10.1093/nar/gkab497
Bianco PR, Sale JE, Reyes-Lamothe R. Editorial: Single-molecule studies of DNA-protein interactions collection 2021. Nucleic Acids Res. 2021 Jun 21;49(11):6005-6006. doi: 10.1093/nar/gkab497. PMID: 34153108; PMCID: PMC8216273.
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Showing 1 to 7 of 7 entries