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Showing 1 to 11 of 11 entries
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Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae.

Plant & cell physiology

Yamamoto N, Kudo T, Fujiwara S, Takatsuka Y, Hirokawa Y, Tsuzuki M, Takano T, Kobayashi M, Suda K, Asamizu E, Yokoyama K, Shibata D, Tabata S, Yano K.
PMID: 26746174
Plant Cell Physiol. 2016 Jan;57(1):e6. doi: 10.1093/pcp/pcv195. Epub 2016 Jan 07.

Pleurochrysis is a coccolithophorid genus, which belongs to the Coccolithales in the Haptophyta. The genus has been used extensively for biological research, together with Emiliania in the Isochrysidales, to understand distinctive features between the two coccolithophorid-including orders. However, molecular...

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Yamamoto N, Kudo T, Fujiwara S, et al. Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae. Plant Cell Physiol. 2016;57(1):e6doi: 10.1093/pcp/pcv195.
Yamamoto, N., Kudo, T., Fujiwara, S., Takatsuka, Y., Hirokawa, Y., Tsuzuki, M., Takano, T., Kobayashi, M., Suda, K., Asamizu, E., Yokoyama, K., Shibata, D., Tabata, S., & Yano, K. (2016). Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae. Plant & cell physiology, 57(1), e6. https://doi.org/10.1093/pcp/pcv195
Yamamoto, Naoki, et al. "Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae." Plant & cell physiology vol. 57,1 (2016): e6. doi: https://doi.org/10.1093/pcp/pcv195
Yamamoto N, Kudo T, Fujiwara S, Takatsuka Y, Hirokawa Y, Tsuzuki M, Takano T, Kobayashi M, Suda K, Asamizu E, Yokoyama K, Shibata D, Tabata S, Yano K. Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae. Plant Cell Physiol. 2016 Jan;57(1):e6. doi: 10.1093/pcp/pcv195. Epub 2016 Jan 07. PMID: 26746174; PMCID: PMC4722176.
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VitisExpDB: a database resource for grape functional genomics.

BMC plant biology

Doddapaneni H, Lin H, Walker MA, Yao J, Civerolo EL.
PMID: 18307813
BMC Plant Biol. 2008 Feb 28;8:23. doi: 10.1186/1471-2229-8-23.

BACKGROUND: The family Vitaceae consists of many different grape species that grow in a range of climatic conditions. In the past few years, several studies have generated functional genomic information on different Vitis species and cultivars, including the European...

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Doddapaneni H, Lin H, Walker MA, et al. VitisExpDB: a database resource for grape functional genomics. BMC Plant Biol. 2008;8:23doi: 10.1186/1471-2229-8-23.
Doddapaneni, H., Lin, H., Walker, M. A., Yao, J., & Civerolo, E. L. (2008). VitisExpDB: a database resource for grape functional genomics. BMC plant biology, 823. https://doi.org/10.1186/1471-2229-8-23
Doddapaneni, Harshavardhan, et al. "VitisExpDB: a database resource for grape functional genomics." BMC plant biology vol. 8 (2008): 23. doi: https://doi.org/10.1186/1471-2229-8-23
Doddapaneni H, Lin H, Walker MA, Yao J, Civerolo EL. VitisExpDB: a database resource for grape functional genomics. BMC Plant Biol. 2008 Feb 28;8:23. doi: 10.1186/1471-2229-8-23. PMID: 18307813; PMCID: PMC2359749.
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Uniportal VATS: Comment on the consensus report from the uniportal VATS interest group (UVIG) of the European Society of Thoracic Surgeons.

European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery

Migliore M, Hirai K.
PMID: 31397477
Eur J Cardiothorac Surg. 2020 Mar 01;57(3):612. doi: 10.1093/ejcts/ezz221.

No abstract available.

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Migliore M, Hirai K. Uniportal VATS: Comment on the consensus report from the uniportal VATS interest group (UVIG) of the European Society of Thoracic Surgeons. Eur J Cardiothorac Surg. 2020;57(3):612doi: 10.1093/ejcts/ezz221.
Migliore, M., & Hirai, K. (2020). Uniportal VATS: Comment on the consensus report from the uniportal VATS interest group (UVIG) of the European Society of Thoracic Surgeons. European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery, 57(3), 612. https://doi.org/10.1093/ejcts/ezz221
Migliore, Marcello, and Hirai, Kyoji. "Uniportal VATS: Comment on the consensus report from the uniportal VATS interest group (UVIG) of the European Society of Thoracic Surgeons." European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery vol. 57,3 (2020): 612. doi: https://doi.org/10.1093/ejcts/ezz221
Migliore M, Hirai K. Uniportal VATS: Comment on the consensus report from the uniportal VATS interest group (UVIG) of the European Society of Thoracic Surgeons. Eur J Cardiothorac Surg. 2020 Mar 01;57(3):612. doi: 10.1093/ejcts/ezz221. PMID: 31397477.
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Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels.

PloS one

Faircloth BC, Glenn TC.
PMID: 22900027
PLoS One. 2012;7(8):e42543. doi: 10.1371/journal.pone.0042543. Epub 2012 Aug 10.

Ligating adapters with unique synthetic oligonucleotide sequences (sequence tags) onto individual DNA samples before massively parallel sequencing is a popular and efficient way to obtain sequence data from many individual samples. Tag sequences should be numerous and sufficiently different...

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Faircloth BC, Glenn TC. Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels. PLoS One. 2012;7(8):e42543doi: 10.1371/journal.pone.0042543.
Faircloth, B. C., & Glenn, T. C. (2012). Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels. PloS one, 7(8), e42543. https://doi.org/10.1371/journal.pone.0042543
Faircloth, Brant C, and Glenn, Travis C. "Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels." PloS one vol. 7,8 (2012): e42543. doi: https://doi.org/10.1371/journal.pone.0042543
Faircloth BC, Glenn TC. Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels. PLoS One. 2012;7(8):e42543. doi: 10.1371/journal.pone.0042543. Epub 2012 Aug 10. PMID: 22900027; PMCID: PMC3416851.
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A harmonised European training syllabus for thoracic surgery: report from the ESTS/ERS task force group.

The European respiratory journal

Massard G, Tabin N, Mitchell S, Batirel H, Brunelli A, Elia S, Frick A, Huertgen M, Lerut A, Molins L, Papagiannopoulos K, Subotic D, van Schil P, Varela G, van Raemdonck D.
PMID: 29903828
Eur Respir J. 2018 Jun 14;51(6). doi: 10.1183/13993003.00370-2018. Print 2018 Jun.

No abstract available.

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Massard G, Tabin N, Mitchell S, et al. A harmonised European training syllabus for thoracic surgery: report from the ESTS/ERS task force group. Eur Respir J. 2018;51(6)doi: 10.1183/13993003.00370-2018.
Massard, G., Tabin, N., Mitchell, S., Batirel, H., Brunelli, A., Elia, S., Frick, A., Huertgen, M., Lerut, A., Molins, L., Papagiannopoulos, K., Subotic, D., van Schil, P., Varela, G., & van Raemdonck, D. (2018). A harmonised European training syllabus for thoracic surgery: report from the ESTS/ERS task force group. The European respiratory journal, 51(6), . https://doi.org/10.1183/13993003.00370-2018
Massard, Gilbert, et al. "A harmonised European training syllabus for thoracic surgery: report from the ESTS/ERS task force group." The European respiratory journal vol. 51,6 (2018). doi: https://doi.org/10.1183/13993003.00370-2018
Massard G, Tabin N, Mitchell S, Batirel H, Brunelli A, Elia S, Frick A, Huertgen M, Lerut A, Molins L, Papagiannopoulos K, Subotic D, van Schil P, Varela G, van Raemdonck D. A harmonised European training syllabus for thoracic surgery: report from the ESTS/ERS task force group. Eur Respir J. 2018 Jun 14;51(6). doi: 10.1183/13993003.00370-2018. Print 2018 Jun. PMID: 29903828.
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Computational identification of MiRNA-7110 from pulmonary arterial hypertension (PAH) ESTs: a new microRNA that links diabetes and PAH.

Hypertension research : official journal of the Japanese Society of Hypertension

Johnson J, Lakshmanan G, M B, R M V, Kalimuthu K, Sekar D.
PMID: 31792346
Hypertens Res. 2020 Apr;43(4):360-362. doi: 10.1038/s41440-019-0369-5. Epub 2019 Dec 02.

No abstract available.

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Johnson J, Lakshmanan G, M B, et al. Computational identification of MiRNA-7110 from pulmonary arterial hypertension (PAH) ESTs: a new microRNA that links diabetes and PAH. Hypertens Res. 2019;43(4):360-362doi: 10.1038/s41440-019-0369-5.
Johnson, J., Lakshmanan, G., M, B., R M, V., Kalimuthu, K., & Sekar, D. (2020). Computational identification of MiRNA-7110 from pulmonary arterial hypertension (PAH) ESTs: a new microRNA that links diabetes and PAH. Hypertension research : official journal of the Japanese Society of Hypertension, 43(4), 360-362. https://doi.org/10.1038/s41440-019-0369-5
Johnson, Jayapriya, et al. "Computational identification of MiRNA-7110 from pulmonary arterial hypertension (PAH) ESTs: a new microRNA that links diabetes and PAH." Hypertension research : official journal of the Japanese Society of Hypertension vol. 43,4 (2020): 360-362. doi: https://doi.org/10.1038/s41440-019-0369-5
Johnson J, Lakshmanan G, M B, R M V, Kalimuthu K, Sekar D. Computational identification of MiRNA-7110 from pulmonary arterial hypertension (PAH) ESTs: a new microRNA that links diabetes and PAH. Hypertens Res. 2020 Apr;43(4):360-362. doi: 10.1038/s41440-019-0369-5. Epub 2019 Dec 02. PMID: 31792346.
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Tissue Molecular Anatomy Project (TMAP): an expression database for comparative cancer proteomics.

Proteomics

Medjahed D, Luke BT, Tontesh TS, Smythers GW, Munroe DJ, Lemkin PF.
PMID: 12923770
Proteomics. 2003 Aug;3(8):1445-53. doi: 10.1002/pmic.200300488.

By mining publicly accessible databases, we have developed a collection of tissue-specific predictive protein expression maps as a function of cancer histological state. Data analysis is applied to the differential expression of gene products in pooled libraries from the...

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Medjahed D, Luke BT, Tontesh TS, et al. Tissue Molecular Anatomy Project (TMAP): an expression database for comparative cancer proteomics. Proteomics. 2003;3(8):1445-53doi: 10.1002/pmic.200300488.
Medjahed, D., Luke, B. T., Tontesh, T. S., Smythers, G. W., Munroe, D. J., & Lemkin, P. F. (2003). Tissue Molecular Anatomy Project (TMAP): an expression database for comparative cancer proteomics. Proteomics, 3(8), 1445-53. https://doi.org/10.1002/pmic.200300488
Medjahed, Djamel, et al. "Tissue Molecular Anatomy Project (TMAP): an expression database for comparative cancer proteomics." Proteomics vol. 3,8 (2003): 1445-53. doi: https://doi.org/10.1002/pmic.200300488
Medjahed D, Luke BT, Tontesh TS, Smythers GW, Munroe DJ, Lemkin PF. Tissue Molecular Anatomy Project (TMAP): an expression database for comparative cancer proteomics. Proteomics. 2003 Aug;3(8):1445-53. doi: 10.1002/pmic.200300488. PMID: 12923770.
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ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

BMC bioinformatics

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC.
PMID: 19166590
BMC Bioinformatics. 2009 Jan 23;10:30. doi: 10.1186/1471-2105-10-30.

BACKGROUND: Systems biology modeling from microarray data requires the most contemporary structural and functional array annotation. However, microarray annotations, especially for non-commercial, non-traditional biomedical model organisms, are often dated. In addition, most microarray analysis tools do not readily accept...

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van den Berg BH, Konieczka JH, McCarthy FM, et al. ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. BMC Bioinformatics. 2009;10:30doi: 10.1186/1471-2105-10-30.
van den Berg, B. H., Konieczka, J. H., McCarthy, F. M., & Burgess, S. C. (2009). ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. BMC bioinformatics, 1030. https://doi.org/10.1186/1471-2105-10-30
van den Berg, Bart Hj, et al. "ArrayIDer: automated structural re-annotation pipeline for DNA microarrays." BMC bioinformatics vol. 10 (2009): 30. doi: https://doi.org/10.1186/1471-2105-10-30
van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC. ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. BMC Bioinformatics. 2009 Jan 23;10:30. doi: 10.1186/1471-2105-10-30. PMID: 19166590; PMCID: PMC2636773.
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TranSeqAnnotator: large-scale analysis of transcriptomic data.

BMC bioinformatics

Menon R, Garg G, Gasser RB, Ranganathan S.
PMID: 23282024
BMC Bioinformatics. 2012;13:S24. doi: 10.1186/1471-2105-13-S17-S24. Epub 2012 Dec 13.

BACKGROUND: The transcriptome of an organism can be studied with the analysis of expressed sequence tag (EST) data sets that offers a rapid and cost effective approach with several new and updated bioinformatics approaches and tools for assembly and...

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Menon R, Garg G, Gasser RB, et al. TranSeqAnnotator: large-scale analysis of transcriptomic data. BMC Bioinformatics. 2012;13:S24doi: 10.1186/1471-2105-13-S17-S24.
Menon, R., Garg, G., Gasser, R. B., & Ranganathan, S. (2012). TranSeqAnnotator: large-scale analysis of transcriptomic data. BMC bioinformatics, 13S24. https://doi.org/10.1186/1471-2105-13-S17-S24
Menon, Ranjeeta, et al. "TranSeqAnnotator: large-scale analysis of transcriptomic data." BMC bioinformatics vol. 13 (2012): S24. doi: https://doi.org/10.1186/1471-2105-13-S17-S24
Menon R, Garg G, Gasser RB, Ranganathan S. TranSeqAnnotator: large-scale analysis of transcriptomic data. BMC Bioinformatics. 2012;13:S24. doi: 10.1186/1471-2105-13-S17-S24. Epub 2012 Dec 13. PMID: 23282024; PMCID: PMC3521237.
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Serial analysis of gene expression.

Nature protocols

Hu M, Polyak K.
PMID: 17487157
Nat Protoc. 2006;1(4):1743-60. doi: 10.1038/nprot.2006.269.

Serial analysis of gene expression (SAGE) is a method used to obtain comprehensive, unbiased and quantitative gene-expression profiles. Its major advantage over arrays is that it does not require a priori knowledge of the genes to be analyzed and...

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Hu M, Polyak K. Serial analysis of gene expression. Nat Protoc. 2006;1(4):1743-60doi: 10.1038/nprot.2006.269.
Hu, M., & Polyak, K. (2006). Serial analysis of gene expression. Nature protocols, 1(4), 1743-60. https://doi.org/10.1038/nprot.2006.269
Hu, Min, and Polyak, Kornelia. "Serial analysis of gene expression." Nature protocols vol. 1,4 (2006): 1743-60. doi: https://doi.org/10.1038/nprot.2006.269
Hu M, Polyak K. Serial analysis of gene expression. Nat Protoc. 2006;1(4):1743-60. doi: 10.1038/nprot.2006.269. PMID: 17487157.
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Identification and functional analyses of new sesame miRNAs (Sesamum indicum L.) and their targets.

Molecular biology reports

Marakli S.
PMID: 30209739
Mol Biol Rep. 2018 Dec;45(6):2145-2155. doi: 10.1007/s11033-018-4373-7. Epub 2018 Sep 12.

Plant microRNAs (miRNAs) have been commonly investigated during many years. Hundreds of miRNAs have been identified in many different plant species but there is very little information about the function of sesame (Sesamum indicum L.) miRNAs. For this purpose,...

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Marakli S. Identification and functional analyses of new sesame miRNAs (Sesamum indicum L.) and their targets. Mol Biol Rep. 2018;45(6):2145-2155doi: 10.1007/s11033-018-4373-7.
Marakli, S. (2018). Identification and functional analyses of new sesame miRNAs (Sesamum indicum L.) and their targets. Molecular biology reports, 45(6), 2145-2155. https://doi.org/10.1007/s11033-018-4373-7
Marakli, Sevgi. "Identification and functional analyses of new sesame miRNAs (Sesamum indicum L.) and their targets." Molecular biology reports vol. 45,6 (2018): 2145-2155. doi: https://doi.org/10.1007/s11033-018-4373-7
Marakli S. Identification and functional analyses of new sesame miRNAs (Sesamum indicum L.) and their targets. Mol Biol Rep. 2018 Dec;45(6):2145-2155. doi: 10.1007/s11033-018-4373-7. Epub 2018 Sep 12. PMID: 30209739.
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Showing 1 to 11 of 11 entries