Display options
Share it on

Clin Biochem Rev. 2008 Feb;29(1):11-26.

Common and rare gene variants affecting plasma LDL cholesterol.

The Clinical biochemist. Reviews

John R Burnett, Amanda J Hooper

Affiliations

  1. Department of Core Clinical Pathology & Biochemistry, PathWest Laboratory Medicine WA, Royal Perth Hospital, Perth, Australia. [email protected]

PMID: 18566665 PMCID: PMC2423314

Abstract

The plasma level of LDL cholesterol is clinically important and genetically complex. LDL cholesterol levels are in large part determined by the activity of LDL receptors (LDLR) in the liver. Autosomal dominant familial hypercholesterolaemia (FH) - with its high LDL cholesterol levels, xanthomas, and premature atherosclerosis - is caused by mutations in either the LDLR or in APOB - the protein in LDL recognised by the LDLR. A third, rare form - autosomal recessive hypercholesterolaemia - arises from mutations in the gene encoding an adaptor protein involved in the internalisation of the LDLR. A fourth variant of inherited hypercholesterolaemia was recently found to be associated with missense mutations in PCSK9, which encodes a serine protease that degrades LDLR. Whereas the gain-of-function mutations in PCSK9 are rare, a spectrum of more frequent loss-of-function mutations in PCSK9 associated with low LDL cholesterol levels has been identified in selected populations and could protect against coronary heart disease. Heterozygous familial hypobetalipoproteinaemia (FHBL) - with its low LDL cholesterol levels and resistance to atherosclerosis - is caused by mutations in APOB. In contrast to other inherited forms of severe hypocholesterolaemia such as abetalipoproteinaemia - caused by mutations in MTP - and homozygous FHBL, a deficiency of PCSK9 appears to be benign. Rare variants of NPC1L1, the gene encoding the putative intestinal cholesterol receptor, have shown more modest effects on plasma LDL cholesterol than PCSK9 variants, similar in magnitude to the effect of common APOE variants. Taken together, these findings indicate that heritable variation in plasma LDL cholesterol is conferred by sequence variation in various loci, with a small number of common and multiple rare gene variants contributing to the phenotype.

References

  1. Science. 1992 Nov 6;258(5084):999-1001 - PubMed
  2. Curr Opin Lipidol. 1999 Aug;10(4):341-6 - PubMed
  3. Science. 1985 May 17;228(4701):815-22 - PubMed
  4. J Biol Chem. 2007 Aug 17;282(33):24270-83 - PubMed
  5. Atherosclerosis. 2006 Jun;186(2):433-40 - PubMed
  6. Proc Natl Acad Sci U S A. 1987 Oct;84(19):6919-23 - PubMed
  7. Am J Cardiol. 2006 Dec 18;98(12A):3Q-9Q - PubMed
  8. Hum Mutat. 2000 Mar;15(3):294-5 - PubMed
  9. Science. 2001 May 18;292(5520):1394-8 - PubMed
  10. J Biol Chem. 2005 Dec 9;280(49):40996-1004 - PubMed
  11. Hum Mol Genet. 1993 Dec;2(12):2109-16 - PubMed
  12. Semin Vasc Med. 2004 Aug;4(3):241-8 - PubMed
  13. Annu Rev Nutr. 2000;20:663-97 - PubMed
  14. Curr Opin Lipidol. 2007 Jun;18(3):304-9 - PubMed
  15. Atherosclerosis. 2004 May;174(1):165-72 - PubMed
  16. Ann Clin Biochem. 2008 Mar;45(Pt 2):170-6 - PubMed
  17. J Lab Clin Med. 1976 Dec;88(6):941-57 - PubMed
  18. J Biol Chem. 1996 Nov 22;271(47):29945-52 - PubMed
  19. Atherosclerosis. 2008 Feb;196(2):659-66 - PubMed
  20. Nat Genet. 2005 Feb;37(2):161-5 - PubMed
  21. Proc Natl Acad Sci U S A. 1980 May;77(5):2465-9 - PubMed
  22. J Clin Invest. 2007 Jul;117(7):1968-78 - PubMed
  23. Hum Mutat. 2005 Dec;26(6):550-6 - PubMed
  24. N Engl J Med. 1993 Apr 22;328(16):1150-6 - PubMed
  25. Biochim Biophys Acta. 2007 Sep;1771(9):1140-7 - PubMed
  26. BMJ. 1991 Oct 12;303(6807):893-6 - PubMed
  27. J Lab Clin Med. 2002 Nov;140(5):301-2 - PubMed
  28. N Engl J Med. 2006 Mar 23;354(12):1264-72 - PubMed
  29. Arterioscler Thromb Vasc Biol. 2005 Sep;25(9):1979-84 - PubMed
  30. Nature. 1993 Sep 2;365(6441):65-9 - PubMed
  31. Nat Genet. 2003 Jun;34(2):154-6 - PubMed
  32. Arterioscler Thromb Vasc Biol. 1995 Aug;15(8):1025-9 - PubMed
  33. Nutr Metab. 1973;15(1):132-40 - PubMed
  34. Trends Biochem Sci. 2007 Feb;32(2):71-7 - PubMed
  35. Clin Chem. 2004 Oct;50(10):1725-32 - PubMed
  36. Nature. 2005 Oct 6;437(7060):906-10 - PubMed
  37. Crit Rev Clin Lab Sci. 2002 Apr;39(2):89-137 - PubMed
  38. J Lipid Res. 2000 Aug;41(8):1199-204 - PubMed
  39. Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8132-7 - PubMed
  40. Arterioscler Thromb Vasc Biol. 2006 May;26(5):1094-100 - PubMed
  41. Eye (Lond). 2001 Aug;15(Pt 4):525-30 - PubMed
  42. Clin Genet. 2005 Feb;67(2):175-7 - PubMed
  43. Arterioscler Thromb Vasc Biol. 1998 Nov;18(11):1745-51 - PubMed
  44. J Lipid Res. 1996 Apr;37(4):844-52 - PubMed
  45. J Lipid Res. 1990 Aug;31(8):1337-49 - PubMed
  46. J Lipid Res. 1992 Jul;33(7):1037-50 - PubMed
  47. J Biol Chem. 1991 Feb 15;266(5):3300-8 - PubMed
  48. Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):928-33 - PubMed
  49. Science. 1987 Oct 16;238(4825):363-6 - PubMed
  50. J Lipid Res. 2007 Jul;48(7):1488-98 - PubMed
  51. JAMA. 2007 Sep 19;298(11):1300-11 - PubMed
  52. Science. 1994 May 6;264(5160):850-2 - PubMed
  53. J Endocrinol Invest. 2007 Sep;30(8):700-19 - PubMed
  54. Hum Mol Genet. 2007 Nov 15;16(22):2751-9 - PubMed
  55. Lancet. 1994 Nov 19;344(8934):1383-9 - PubMed
  56. Clin Chem. 1998 Aug;44(8 Pt 1):1659-65 - PubMed
  57. Lancet. 1992 Oct 10;340(8824):879-80 - PubMed
  58. Baillieres Clin Endocrinol Metab. 1987 Aug;1(3):515-50 - PubMed
  59. Arterioscler Thromb Vasc Biol. 2003 Nov 1;23(11):1963-70 - PubMed
  60. Am J Hum Genet. 1985 Mar;37(2):268-85 - PubMed
  61. Med J Aust. 2005 Jun 6;182(11):552-3 - PubMed
  62. J Lipid Res. 2004 May;45(5):941-7 - PubMed
  63. Science. 2006 Mar 24;311(5768):1721-3 - PubMed
  64. J Clin Invest. 1992 Jun;89(6):1931-7 - PubMed
  65. J Biol Chem. 2008 Jan 25;283(4):2363-72 - PubMed
  66. Front Biosci. 2003 May 01;8:s500-6 - PubMed
  67. J Neurol Sci. 2006 Jun 15;245(1-2):35-9 - PubMed
  68. J Lipid Res. 2005 Apr;46(4):628-40 - PubMed
  69. Am J Cardiol. 1998 Nov 26;82(10B):57T-59T - PubMed
  70. Cell. 1987 Sep 11;50(6):831-40 - PubMed
  71. Clin Genet. 2004 Dec;66(6):483-7 - PubMed
  72. Atherosclerosis. 2007 Aug;193(2):445-8 - PubMed
  73. Genomics. 1997 Oct 1;45(1):78-87 - PubMed
  74. Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2069-74 - PubMed
  75. J Clin Endocrinol Metab. 2007 Apr;92(4):1474-8 - PubMed
  76. Proc Natl Acad Sci U S A. 2006 Feb 7;103(6):1810-5 - PubMed
  77. J Biol Chem. 2007 Jun 22;282(25):18602-18612 - PubMed
  78. Crit Rev Clin Lab Sci. 2005;42(5-6):515-45 - PubMed
  79. Atherosclerosis. 1997 Mar 21;129(2):185-92 - PubMed
  80. J Biol Chem. 2003 Apr 11;278(15):13442-52 - PubMed
  81. Eur Heart J. 2006 Sep;27(18):2240-6 - PubMed
  82. Proc Natl Acad Sci U S A. 1989 Jan;86(2):587-91 - PubMed
  83. J Lipid Res. 2003 Mar;44(3):470-8 - PubMed
  84. Am J Med. 1964 Sep;37:402-7 - PubMed
  85. J Biol Chem. 2001 Mar 23;276(12):9214-8 - PubMed
  86. Lipids Health Dis. 2005 Aug 12;4:16 - PubMed
  87. Science. 1974 Jul 5;185(4145):61-3 - PubMed
  88. Science. 1986 Apr 4;232(4746):34-47 - PubMed
  89. Annu Rev Genet. 1990;24:133-70 - PubMed
  90. Clin Chem. 2007 Oct;53(10):1814-9 - PubMed
  91. Atherosclerosis. 2004 May;174(1):11-6 - PubMed

Publication Types