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Shepherd R, Forbes SA, Beare D, et al. Data mining using the Catalogue of Somatic Mutations in Cancer BioMart. Database (Oxford). 2011;2011:bar018doi: 10.1093/database/bar018.
Shepherd, R., Forbes, S. A., Beare, D., Bamford, S., Cole, C. G., Ward, S., Bindal, N., Gunasekaran, P., Jia, M., Kok, C. Y., Leung, K., Menzies, A., Butler, A. P., Teague, J. W., Campbell, P. J., Stratton, M. R., & Futreal, P. A. (2011). Data mining using the Catalogue of Somatic Mutations in Cancer BioMart. Database : the journal of biological databases and curation, 2011bar018. https://doi.org/10.1093/database/bar018
Shepherd, Rebecca, et al. "Data mining using the Catalogue of Somatic Mutations in Cancer BioMart." Database : the journal of biological databases and curation vol. 2011 (2011): bar018. doi: https://doi.org/10.1093/database/bar018
Shepherd R, Forbes SA, Beare D, Bamford S, Cole CG, Ward S, Bindal N, Gunasekaran P, Jia M, Kok CY, Leung K, Menzies A, Butler AP, Teague JW, Campbell PJ, Stratton MR, Futreal PA. Data mining using the Catalogue of Somatic Mutations in Cancer BioMart. Database (Oxford). 2011 May 23;2011:bar018. doi: 10.1093/database/bar018. Print 2011. PMID: 21609966; PMCID: PMC3263736.
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Database (Oxford). 2011 May 23;2011:bar018. doi: 10.1093/database/bar018. Print 2011.

Data mining using the Catalogue of Somatic Mutations in Cancer BioMart.

Database : the journal of biological databases and curation

Rebecca Shepherd, Simon A Forbes, David Beare, S Bamford, Charlotte G Cole, Sari Ward, Nidhi Bindal, Prasad Gunasekaran, Mingming Jia, Chai Yin Kok, Kenric Leung, Andrew Menzies, Adam P Butler, Jon W Teague, Peter J Campbell, Michael R Stratton, P Andrew Futreal

Affiliations

  1. Cancer Genome Project, The Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK.

PMID: 21609966 PMCID: PMC3263736 DOI: 10.1093/database/bar018

Abstract

Catalogue of Somatic Mutations in Cancer (COSMIC) (http://www.sanger.ac.uk/cosmic) is a publicly available resource providing information on somatic mutations implicated in human cancer. Release v51 (January 2011) includes data from just over 19,000 genes, 161,787 coding mutations and 5573 gene fusions, described in more than 577,000 tumour samples. COSMICMart (COSMIC BioMart) provides a flexible way to mine these data and combine somatic mutations with other biological relevant data sets. This article describes the data available in COSMIC along with examples of how to successfully mine and integrate data sets using COSMICMart. DATABASE URL: http://www.sanger.ac.uk/genetics/CGP/cosmic/biomart/martview/.

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