Display options
Share it on

Cell Biosci. 2014 Jul 23;4:37. doi: 10.1186/2045-3701-4-37. eCollection 2014.

Adenosine triphosphatases of thermophilic archaeal double-stranded DNA viruses.

Cell & bioscience

Lotta J Happonen, Susanne Erdmann, Roger A Garrett, Sarah J Butcher

Affiliations

  1. Department of Clinical Sciences, Division of Infection Medicine, Lund University, SE-221 84 Lund, Sweden.
  2. Archaea Centre, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.
  3. Institute of Biotechnology, University of Helsinki, (Viikinkaari 1), P.O. Box 65, FI-00014 Helsinki, Finland.

PMID: 25105011 PMCID: PMC4124505 DOI: 10.1186/2045-3701-4-37

Abstract

Adenosine triphosphatases (ATPases) of double-stranded (ds) DNA archaeal viruses are structurally related to the AAA+ hexameric helicases and translocases. These ATPases have been implicated in viral life cycle functions such as DNA entry into the host, and viral genome packaging into preformed procapsids. We summarize bioinformatical analyses of a wide range of archaeal ATPases, and review the biochemical and structural properties of those archaeal ATPases that have measurable ATPase activity. We discuss their potential roles in genome delivery into the host, virus assembly and genome packaging in comparison to hexameric helicases and packaging motors from bacteriophages.

Keywords: ATPase; Archaeal; Genome injection; Genome packaging; MoxR ATPase; Virus

References

  1. Environ Microbiol. 2009 Nov;11(11):2849-62 - PubMed
  2. Virology. 2011 Dec 5;421(1):61-6 - PubMed
  3. J Bacteriol. 2011 Oct;193(19):5412-9 - PubMed
  4. Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10604-9 - PubMed
  5. Biophys J. 2013 May 21;104(10):2264-72 - PubMed
  6. Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22499-504 - PubMed
  7. Cell. 2004 Sep 17;118(6):743-55 - PubMed
  8. Virology. 2001 Dec 20;291(2):226-34 - PubMed
  9. ACS Nano. 2013 May 28;7(5):4082-92 - PubMed
  10. J Mol Biol. 2003 Aug 1;331(1):139-54 - PubMed
  11. J Virol. 2006 Aug;80(15):7625-35 - PubMed
  12. Nature. 2005 Aug 25;436(7054):1101-2 - PubMed
  13. J Struct Biol. 2006 Oct;156(1):12-28 - PubMed
  14. J Virol. 2013 Mar;87(6):3248-60 - PubMed
  15. J Mol Biol. 1987 Sep 20;197(2):229-36 - PubMed
  16. Virology. 2013 Aug 15;443(1):28-39 - PubMed
  17. J Biol Chem. 2004 Sep 24;279(39):40795-801 - PubMed
  18. Proc Natl Acad Sci U S A. 2004 May 18;101(20):7716-20 - PubMed
  19. J Struct Biol. 2004 Apr-May;146(1-2):11-31 - PubMed
  20. Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):16868-73 - PubMed
  21. Mol Syst Biol. 2011 Oct 11;7:539 - PubMed
  22. Nat Rev Mol Cell Biol. 2005 Jul;6(7):519-29 - PubMed
  23. Virology. 2013 Aug 15;443(1):20-7 - PubMed
  24. J Comput Chem. 2004 Oct;25(13):1605-12 - PubMed
  25. J Virol. 2013 Aug;87(15):8388-98 - PubMed
  26. EMBO J. 1982;1(8):945-51 - PubMed
  27. Extremophiles. 2014 Jan;18(1):51-60 - PubMed
  28. J Bacteriol. 2010 Jun;192(12):3123-31 - PubMed
  29. Nature. 2000 Dec 7;408(6813):745-50 - PubMed
  30. J Mol Biol. 2006 Feb 24;356(3):589-99 - PubMed
  31. Environ Microbiol. 2013 Jun;15(6):1674-86 - PubMed
  32. Cell. 1997 Oct 31;91(3):335-45 - PubMed
  33. Nature. 2000 Feb 17;403(6771):800-5 - PubMed
  34. Virology. 2004 Jun 1;323(2):233-42 - PubMed
  35. Biochemistry. 1999 Nov 23;38(47):15493-9 - PubMed
  36. Proteins. 2004 Dec 1;57(4):702-10 - PubMed
  37. Virology. 2007 Jul 5;363(2):387-96 - PubMed
  38. J Mol Biol. 2006 Jun 23;359(5):1203-16 - PubMed
  39. Curr Opin Biotechnol. 2013 Aug;24(4):581-90 - PubMed
  40. Gene. 2006 Jun 7;374:19-25 - PubMed
  41. BMC Bioinformatics. 2008 Jan 23;9:40 - PubMed
  42. Bioinformatics. 1999 Apr;15(4):305-8 - PubMed
  43. J Mol Biol. 2005 May 6;348(3):617-29 - PubMed
  44. J Struct Biol. 2006 Oct;156(1):200-9 - PubMed
  45. J Biol Chem. 2005 Jun 17;280(24):23157-64 - PubMed
  46. Annu Rev Biochem. 2012;81:795-822 - PubMed
  47. Mol Cell. 2000 Sep;6(3):637-48 - PubMed
  48. Microbiology (Reading). 2008 Feb;154(Pt 2):383-391 - PubMed
  49. Mol Cell. 2004 Dec 3;16(5):673-85 - PubMed
  50. Virology. 2005 May 25;336(1):83-92 - PubMed
  51. Adv Exp Med Biol. 2012;726:365-77 - PubMed
  52. Virology. 2006 Jan 5;344(1):221-9 - PubMed
  53. J Virol. 2004 Feb;78(4):1954-61 - PubMed
  54. Mol Microbiol. 2007 May;64(4):886-903 - PubMed
  55. Cell. 2008 Dec 26;135(7):1251-62 - PubMed
  56. Proc Natl Acad Sci U S A. 2001 Nov 6;98(23):13341-5 - PubMed
  57. J Virol. 2005 Jul;79(14):9097-107 - PubMed
  58. Virology. 2006 Aug 1;351(2):280-90 - PubMed
  59. J Mol Biol. 2008 Mar 7;376(5):1272-81 - PubMed
  60. Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5504-9 - PubMed
  61. Proc Natl Acad Sci U S A. 2012 May 1;109(18):7079-84 - PubMed
  62. J Virol. 2011 May;85(10):4812-21 - PubMed
  63. J Virol. 2003 Jun;77(11):6314-21 - PubMed
  64. Virology. 2012 Dec 20;434(2):233-41 - PubMed
  65. Virology. 2006 Jun 20;350(1):228-39 - PubMed
  66. J Mol Biol. 2009 Feb 27;386(3):637-47 - PubMed
  67. Mol Cell. 2007 Mar 23;25(6):943-9 - PubMed
  68. Nature. 1996 Nov 28;384(6607):379-83 - PubMed
  69. Genome Announc. 2013 Apr 25;1(2):e0016413 - PubMed
  70. J Bacteriol. 2005 Jun;187(11):3855-8 - PubMed
  71. Mol Cell. 2006 Aug;23(4):457-69 - PubMed
  72. Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):817-22 - PubMed
  73. Nature. 2001 Oct 18;413(6857):748-52 - PubMed
  74. Virology. 2003 Oct 10;315(1):68-79 - PubMed
  75. J Mol Biol. 1981 Nov 15;152(4):641-62 - PubMed
  76. Virology. 2007 Nov 25;368(2):249-61 - PubMed
  77. J Virol. 2010 May;84(9):4747-54 - PubMed
  78. Structure. 2008 May;16(5):715-26 - PubMed
  79. Virology. 2013 Nov;446(1-2):133-43 - PubMed
  80. J Virol. 2012 May;86(9):5067-79 - PubMed
  81. Annu Rev Genet. 2008;42:647-81 - PubMed
  82. Mol Microbiol. 2014 Mar;91(5):900-17 - PubMed
  83. Mol Microbiol. 2004 Apr;52(2):529-40 - PubMed
  84. J Bacteriol. 2008 Oct;190(20):6837-45 - PubMed
  85. J Virol. 2005 Jul;79(14):8677-86 - PubMed
  86. Environ Microbiol. 2010 Nov;12(11):2918-30 - PubMed
  87. J Struct Biol. 2012 Aug;179(2):211-21 - PubMed
  88. Virology. 1991 Nov;185(1):242-50 - PubMed
  89. Environ Microbiol. 2012 Feb;14(2):503-16 - PubMed
  90. J Biol Chem. 2008 Feb 8;283(6):3607-3617 - PubMed
  91. Nucleic Acids Res. 2004 Oct 05;32(17):5260-79 - PubMed
  92. Res Microbiol. 2003 May;154(4):295-302 - PubMed
  93. J Am Chem Soc. 2013 Jul 31;135(30):11216-21 - PubMed

Publication Types