Display options
Cite
Wu AK, Kropinski AM, Lumsden JS, et al. Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418(T.). Stand Genomic Sci. 2015;10:3doi: 10.1186/1944-3277-10-3.
Wu, A. K., Kropinski, A. M., Lumsden, J. S., Dixon, B., & MacInnes, J. I. (2015). Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418(T.). Standards in genomic sciences, 103. https://doi.org/10.1186/1944-3277-10-3
Wu, Anson Kk, et al. "Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418(T.)." Standards in genomic sciences vol. 10 (2015): 3. doi: https://doi.org/10.1186/1944-3277-10-3
Wu AK, Kropinski AM, Lumsden JS, Dixon B, MacInnes JI. Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418(T.). Stand Genomic Sci. 2015 Jan 21;10:3. doi: 10.1186/1944-3277-10-3. eCollection 2015. PMID: 25685258; PMCID: PMC4322650.
Copy Download .nbib Format: NLM
Share it on

Stand Genomic Sci. 2015 Jan 21;10:3. doi: 10.1186/1944-3277-10-3. eCollection 2015.

Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418(T.).

Standards in genomic sciences

Anson Kk Wu, Andrew M Kropinski, John S Lumsden, Brian Dixon, Janet I MacInnes

Affiliations

  1. Department of Pathobiology, Ontario Veterinary College, University of Guelph, 50 Stone Road East, Guelph, Ontario N1G 2W1, Canada.
  2. Department of Biology, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada.

PMID: 25685258 PMCID: PMC4322650 DOI: 10.1186/1944-3277-10-3

Abstract

Flavobacterium psychrophilum is the causative agent of bacterial cold water disease and rainbow trout fry mortality syndrome in salmonid fishes and is associated with significant losses in the aquaculture industry. The virulence factors and molecular mechanisms of pathogenesis of F. psychrophilum are poorly understood. Moreover, at the present time, there are no effective vaccines and control using antimicrobial agents is problematic due to growing antimicrobial resistance and the fact that sick fish don't eat. In the hopes of identifying vaccine and therapeutic targets, we sequenced the genome of the type strain ATCC 49418 which was isolated from the kidney of a Coho salmon (Oncorhychus kisutch) in Washington State (U.S.A.) in 1989. The genome is 2,715,909 bp with a G+C content of 32.75%. It contains 6 rRNA operons, 49 tRNA genes, and is predicted to encode 2,329 proteins.

Keywords: Aerobic; Bacterial cold water disease; Fish pathogen; Flavobacterium; Gram negative; Psychrotolerant; Rainbow trout fry mortality syndrome

References

  1. Mol Biol Evol. 2000 Apr;17(4):540-52 - PubMed
  2. BMC Bioinformatics. 2006 Oct 10;7:439 - PubMed
  3. J Fish Dis. 2003 Oct;26(10):563-74 - PubMed
  4. J Bacteriol. 1959 Jul;78(1):25-32 - PubMed
  5. Dis Aquat Organ. 1998 Jul 30;33(3):167-77 - PubMed
  6. J Fish Dis. 2005 Jul;28(7):391-8 - PubMed
  7. Appl Environ Microbiol. 2014 May;80(9):2728-36 - PubMed
  8. Vet Res. 2013 May 17;44:34 - PubMed
  9. Nat Methods. 2013 Jun;10(6):563-9 - PubMed
  10. Int J Syst Bacteriol. 1997 Apr;47(2):590-2 - PubMed
  11. J Appl Bacteriol. 1969 Mar;32(1):30-9 - PubMed
  12. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W145-8 - PubMed
  13. Nucleic Acids Res. 2003 Jan 1;31(1):439-41 - PubMed
  14. Nucleic Acids Res. 1997 Mar 1;25(5):955-64 - PubMed
  15. J Fish Dis. 2011 Apr;34(4):303-10 - PubMed
  16. Nat Biotechnol. 2008 May;26(5):541-7 - PubMed
  17. Stand Genomic Sci. 2010 Jan 28;2(1):117-34 - PubMed
  18. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9 - PubMed
  19. Nucleic Acids Res. 2004 Mar 19;32(5):1792-7 - PubMed
  20. Appl Environ Microbiol. 1989 Jul;55(7):1796-800 - PubMed
  21. Dis Aquat Organ. 2013 Mar 26;103(2):111-9 - PubMed
  22. Appl Microbiol. 1968 Jan;16(1):97-101 - PubMed
  23. Bioinformatics. 2009 Dec 15;25(24):3317-8 - PubMed
  24. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D173-80 - PubMed
  25. Syst Biol. 2003 Oct;52(5):696-704 - PubMed
  26. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7 - PubMed
  27. Appl Microbiol. 1968 Dec;16(12):1901-6 - PubMed
  28. Fish Shellfish Immunol. 2013 Nov;35(5):1477-82 - PubMed
  29. BMC Bioinformatics. 2012 Sep 19;13:238 - PubMed
  30. Appl Environ Microbiol. 2001 Jun;67(6):2436-44 - PubMed
  31. Nucleic Acids Res. 2001 Jun 15;29(12):2607-18 - PubMed
  32. OMICS. 2008 Jun;12(2):137-41 - PubMed
  33. FEMS Microbiol Lett. 2003 Sep 26;226(2):273-9 - PubMed
  34. Bioinformatics. 2005 Feb 15;21(4):537-9 - PubMed
  35. Nat Genet. 2000 May;25(1):25-9 - PubMed
  36. Science. 2009 Oct 9;326(5950):236-7 - PubMed
  37. BMC Bioinformatics. 2007 May 23;8:172 - PubMed
  38. Nat Biotechnol. 2007 Jul;25(7):763-9 - PubMed
  39. J Bacteriol. 1987 Apr;169(4):1509-15 - PubMed
  40. Bioinformatics. 2002 Mar;18(3):452-64 - PubMed
  41. Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9 - PubMed
  42. Can J Microbiol. 2008 Aug;54(8):619-29 - PubMed

Publication Types