Transfus Med Hemother. 2014 Nov;41(6):453-61. doi: 10.1159/000369079. Epub 2014 Nov 07.
A Genome-Wide Screen for Large-Effect Alloimmunization Susceptibility Loci among Red Blood Cell Transfusion Recipients with Sickle Cell Disease.
Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie
Neil A Hanchard, Joann M Moulds, John W Belmont, Alice Chen
Affiliations
Affiliations
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA ; ARS/USDA/Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
- Scientific Support Services, LifeShare Blood Centers, Shreveport, LA, USA.
- Department of Pathology, Texas Heart Institute, Baylor St. Luke's Medical Center, Houston, TX, USA.
PMID: 25670933
PMCID: PMC4280456 DOI: 10.1159/000369079
Abstract
BACKGROUND: A selective susceptibility of certain individuals to form multiple alloantibodies in response to red cell transfusion is well-recognized in clinical practice, and is a particular problem in persons with sickle cell disease (SCD). The reason for this differential susceptibility is unclear, but inter-individual genetic differences are likely to contribute.
METHODS: We conducted a pilot case-control genome-wide association study using 1,000,000 SNPs in 94 alloimmune responders (cases) and non-responders (controls) with SCD in order to identify loci of large effect size associated with alloimmunization.
RESULTS: No loci showed evidence of association at a genome-wide significance cut-off (p < 0.5 × 10(-8)). SNPs in the ARAP1/STARD10 region showed suggestive association (p < 1 × 10(-6)), but no association was observed at previously implicated loci TRIM21 or HLA. In analyses of the number of accumulated antibodies, a modest association was found with SNPs in the Toll-like receptor gene TLR10 (p < 1 × 10(-4)).
CONCLUSIONS: Alloimmunization in persons with SCD is unlikely to be mediated by loci of very large effect size; however, larger and more comprehensive studies are required to fully evaluate loci with more moderate effects. This study provides a working approach to such future studies in SCD.
Keywords: African American; GWAS; Genome-wide association studies; Genomics; Responders
References
- Transfusion. 1988 Sep-Oct;28(5):463-6 - PubMed
- Lancet. 2002 Mar 30;359(9312):1121-2 - PubMed
- Hum Mol Genet. 2009 Dec 1;18(23):4677-87 - PubMed
- Transfusion. 1999 Jul;39(7):763-71 - PubMed
- Nat Genet. 2009 Jun;41(6):657-65 - PubMed
- Br J Haematol. 2001 Jun;113(3):661-5 - PubMed
- Bioinformatics. 2007 May 15;23(10):1294-6 - PubMed
- Clin Dev Immunol. 2013;2013:937846 - PubMed
- Nature. 2005 Oct 27;437(7063):1299-320 - PubMed
- Blood. 2013 Aug 8;122(6):1062-71 - PubMed
- J Cell Sci. 2005 Jul 1;118(Pt 13):2791-801 - PubMed
- Nat Genet. 2008 Apr;40(4):395-402 - PubMed
- N Engl J Med. 1990 Jun 7;322(23):1617-21 - PubMed
- Nat Genet. 2012 Jul 22;44(8):955-9 - PubMed
- Am J Pediatr Hematol Oncol. 1989 Fall;11(3):314-9 - PubMed
- Transfusion. 2009 Oct;49(10):2221-8 - PubMed
- Transfusion. 2002 Jan;42(1):37-43 - PubMed
- Mol Immunol. 2011 Mar;48(6-7):909-13 - PubMed
- Transfusion. 2001 Sep;41(9):1086-92 - PubMed
- Clin Immunol Immunopathol. 1986 Feb;38(2):178-83 - PubMed
- Nat Genet. 2009 Oct;41(10):1105-9 - PubMed
- Am J Respir Crit Care Med. 2003 Sep 15;168(6):628-32 - PubMed
- Nat Genet. 2009 Jul;41(7):816-9 - PubMed
- Br J Haematol. 1995 Dec;91(4):1000-5 - PubMed
- Blood. 2012 Jul 19;120(3):528-37 - PubMed
- Pediatrics. 2003 Jun;111(6 Pt 1):e661-5 - PubMed
- Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1620-5 - PubMed
- N Engl J Med. 2008 Feb 7;358(6):568-79 - PubMed
- Mol Immunol. 2009 Nov;47(1):64-70 - PubMed
- Nature. 2007 Jun 7;447(7145):661-78 - PubMed
- Hum Mol Genet. 2009 Jul 15;18(14):2711-8 - PubMed
- N Engl J Med. 2012 Mar 29;366(13):1200-8 - PubMed
- Transfusion. 2006 Aug;46(8):1328-33 - PubMed
- Bioinformatics. 2010 Sep 15;26(18):2336-7 - PubMed
- Blood. 1990 Oct 1;76(7):1431-7 - PubMed
- Arthritis Rheum. 2008 Jul;58(7):2206-7 - PubMed
- Am J Hum Genet. 2007 Sep;81(3):559-75 - PubMed
- Nat Methods. 2013 Jan;10(1):5-6 - PubMed
- J Hum Genet. 2011 Apr;56(4):316-23 - PubMed
- Curr Opin Immunol. 2004 Oct;16(5):538-44 - PubMed
- Nature. 2007 Aug 2;448(7153):591-4 - PubMed
- Science. 2007 Aug 17;317(5840):944-7 - PubMed
- Transfusion. 1994 Jul;34(7):558-60 - PubMed
- Nature. 2010 Oct 28;467(7319):1061-73 - PubMed
- Am J Hum Genet. 2012 Jan 13;90(1):7-24 - PubMed
- Transfusion. 2007 Nov;47(11):2066-71 - PubMed
Publication Types
Grant support