Display options
Share it on

Front Genet. 2015 Feb 16;6:22. doi: 10.3389/fgene.2015.00022. eCollection 2015.

Epigenetics and autoimmune diseases: the X chromosome-nucleolus nexus.

Frontiers in genetics

Wesley H Brooks, Yves Renaudineau

Affiliations

  1. Department of Chemistry, University of South Florida Tampa, FL, USA.
  2. Research Unit INSERM ERI29/EA2216, SFR ScinBios, Labex Igo "Immunotherapy Graft, Oncology", Réseau Épigénétique et Réseau Canaux Ioniques du Cancéropole Grand Ouest, European University of Brittany Brest, France ; Laboratory of Immunology and Immunotherapy, Hôpital Morvan Brest, France.

PMID: 25763008 PMCID: PMC4329817 DOI: 10.3389/fgene.2015.00022

Abstract

Autoimmune diseases occur more often in females, suggesting a key role for the X chromosome. X chromosome inactivation, a major epigenetic feature in female cells that provides dosage compensation of X-linked genes to avoid overexpression, presents special vulnerabilities that can contribute to the disease process. Disruption of X inactivation can result in loss of dosage compensation with expression from previously sequestered genes, imbalance of gene products, and altered endogenous material out of normal epigenetic context. In addition, the human X has significant differences compared to other species and these differences can contribute to the frequency and intensity of the autoimmune disease in humans as well as the types of autoantigens encountered. Here a link is demonstrated between autoimmune diseases, such as systemic lupus erythematosus, and the X chromosome by discussing cases in which typically non-autoimmune disorders complicated with X chromosome abnormalities also present lupus-like symptoms. The discussion is then extended to the reported spatial and temporal associations of the inactive X chromosome with the nucleolus. When frequent episodes of cellular stress occur, the inactive X chromosome may be disrupted and inadvertently become involved in the nucleolar stress response. Development of autoantigens, many of which are at least transiently components of the nucleolus, is then described. Polyamines, which aid in nucleoprotein complex assembly in the nucleolus, increase further during cell stress, and appear to have an important role in the autoimmune disease process. Autoantigenic endogenous material can potentially be stabilized by polyamines. This presents a new paradigm for autoimmune diseases: that many are antigen-driven and the autoantigens originate from altered endogenous material due to episodes of cellular stress that disrupt epigenetic control. This suggests that epigenetics and the X chromosome are important aspects of autoimmune diseases.

Keywords: Alu; NETosis; X chromosome; autoimmune disease; epigenetics; lupus; nucleolus; polyamines

References

  1. Crit Rev Biochem Mol Biol. 2000;35(1):1-33 - PubMed
  2. J Exp Med. 2007 Jul 9;204(7):1543-51 - PubMed
  3. Biochem J. 1999 Mar 1;338 ( Pt 2):311-6 - PubMed
  4. J Biomed Biotechnol. 2006;2006(1):59746 - PubMed
  5. Ann N Y Acad Sci. 2000 Apr;906:129-33 - PubMed
  6. EMBO J. 2002 Aug 1;21(15):4183-95 - PubMed
  7. Arthritis Rheum. 2009 Apr;60(4):1065-75 - PubMed
  8. J Immunol. 2009 May 1;182(9):5623-32 - PubMed
  9. J Biol Chem. 1988 Mar 5;263(7):3528-33 - PubMed
  10. J Autoimmun. 2013 Mar;41:175-81 - PubMed
  11. Lupus. 2013 Aug;22(9):870-2 - PubMed
  12. Nat Genet. 2003 Sep;35(1):41-8 - PubMed
  13. Histochem Cell Biol. 2008 May;129(5):659-65 - PubMed
  14. EMBO J. 2004 Oct 13;23(20):4051-60 - PubMed
  15. Cell. 2014 Dec 18;159(7):1665-80 - PubMed
  16. Arthritis Rheum. 2011 May;63(5):1376-86 - PubMed
  17. Immunol Rev. 1996 Aug;152:145-56 - PubMed
  18. Med Hypotheses. 2002 Dec;59(6):736-41 - PubMed
  19. Dermatology. 1997;195(3):280-3 - PubMed
  20. Arthritis Rheum. 2012 Jun;64(6):1809-17 - PubMed
  21. Ann Neurol. 1991 Mar;29(3):252-5 - PubMed
  22. J Hum Genet. 2014 Apr;59(4):174-5 - PubMed
  23. J Virol. 1997 Jun;71(6):4657-62 - PubMed
  24. Cell. 1993 Jul 2;73(7):1403-9 - PubMed
  25. Chromosoma. 2003 Dec;112(4):173-82 - PubMed
  26. J Immunol. 2007 Nov 1;179(9):6352-8 - PubMed
  27. Nucleic Acids Res. 2001 Jul 1;29(13):2795-801 - PubMed
  28. Nature. 2005 Mar 17;434(7031):400-4 - PubMed
  29. Immune Netw. 2014 Jun;14(3):138-48 - PubMed
  30. Virol J. 2012 Sep 08;9:188 - PubMed
  31. Eur J Biochem. 1999 Mar;260(2):336-46 - PubMed
  32. Cancer Cell. 2006 Feb;9(2):121-32 - PubMed
  33. Arthritis Rheum. 2010 Mar;62(3):658-66 - PubMed
  34. J Cell Biol. 2001 May 14;153(4):773-84 - PubMed
  35. Nature. 1987 Jun 25-Jul 1;327(6124):725-7 - PubMed
  36. IUBMB Life. 2009 Sep;61(9):880-94 - PubMed
  37. Am J Hum Genet. 2002 Aug;71(2):312-26 - PubMed
  38. Genome Res. 2000 Mar;10(3):277-92 - PubMed
  39. Hum Mol Genet. 2007 Oct 15;16 Spec No. 2:R150-8 - PubMed
  40. J Virol. 2008 Apr;82(8):4082-90 - PubMed
  41. Arthritis Rheum. 2008 Aug;58(8):2511-7 - PubMed
  42. Gene. 1999 Nov 1;239(2):367-72 - PubMed
  43. Front Immunol. 2013 Apr 17;4:91 - PubMed
  44. Proc Natl Acad Sci U S A. 1982 Apr;79(7):2352-4 - PubMed
  45. Int J Biochem Cell Biol. 2010 Jan;42(1):39-51 - PubMed
  46. Nucleic Acids Res. 1985 Apr 11;13(7):2617-29 - PubMed
  47. PLoS Genet. 2013 Mar;9(3):e1003402 - PubMed
  48. Clin Neurol Neurosurg. 2009 Jan;111(1):54-6 - PubMed
  49. Mol Cell Biol. 1999 Jan;19(1):1-11 - PubMed
  50. Nucleic Acids Res. 1995 May 25;23 (10 ):1758-65 - PubMed
  51. Hum Genet. 1985;69(2):122-9 - PubMed
  52. Nat Struct Mol Biol. 2010 May;17(5):539-41 - PubMed
  53. J Invest Dermatol. 1999 Oct;113(4):587-94 - PubMed
  54. Biochim Biophys Acta. 1998 Mar 4;1396(1):67-87 - PubMed
  55. J Biochem. 1998 Jan;123(1):120-7 - PubMed
  56. PLoS One. 2014 Mar 03;9(3):e90182 - PubMed
  57. Nat Rev Mol Cell Biol. 2014 Aug;15(8):509-24 - PubMed
  58. Nucleic Acids Res. 2005 May 16;33(9):2792-805 - PubMed
  59. J Rheumatol. 1991 Feb;18(2):215-22 - PubMed
  60. PLoS Comput Biol. 2009 Dec;5(12):e1000610 - PubMed
  61. Nat Rev Genet. 2011 Jun;12(6):429-42 - PubMed
  62. Int J Dermatol. 2004 Nov;43(11):840-2 - PubMed
  63. Pediatr Res. 2007 May;61(5 Pt 2):24R-29R - PubMed
  64. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5 - PubMed
  65. RNA. 2001 May;7(5):682-91 - PubMed
  66. Arthritis Rheum. 2000 Dec;43(12):2634-47 - PubMed
  67. Gene. 2001 Oct 3;276(1-2):127-33 - PubMed
  68. Annu Rev Biophys Biomol Struct. 2005;34:221-43 - PubMed
  69. Clin Nutr. 2005 Apr;24(2):184-97 - PubMed
  70. Proc Natl Acad Sci U S A. 1993 Aug 15;90(16):7804-8 - PubMed
  71. Ann Rheum Dis. 2013 Mar;72(3):437-44 - PubMed
  72. RNA. 2006 Aug;12(8):1569-82 - PubMed
  73. Curr Pharm Biotechnol. 2012 Aug;13(10):2046-53 - PubMed
  74. Cell. 2014 Dec 4;159(6):1377-88 - PubMed
  75. Z Zellforsch Mikrosk Anat. 1972;129(4):447-54 - PubMed
  76. Autoimmunity. 2010 Feb;43(1):7-16 - PubMed
  77. FEBS Lett. 2011 Dec 1;585(23):3667-74 - PubMed
  78. J Mol Biol. 2004 Jul 30;341(1):27-36 - PubMed
  79. J Autoimmun. 2010 May;34(3):J207-19 - PubMed
  80. Experientia. 1981 Jan 15;37(1):34-5 - PubMed
  81. Br J Dermatol. 1981 May;104(5):495-505 - PubMed
  82. Rev Med Virol. 2009 Jul;19(4):201-14 - PubMed
  83. Arthritis Rheum. 1991 Jan;34(1):101-5 - PubMed
  84. Arthritis Rheum. 2012 Jul;64(7):2338-45 - PubMed
  85. Cell. 2010 Jun 11;141(6):956-69 - PubMed
  86. Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15838-43 - PubMed
  87. Wiley Interdiscip Rev RNA. 2010 Nov-Dec;1(3):415-31 - PubMed
  88. J Hum Genet. 2014 Apr;59(4):178-88 - PubMed
  89. Clin Rev Allergy Immunol. 2012 Feb;42(1):58-70 - PubMed
  90. PLoS One. 2013 Jun 26;8(6):e67689 - PubMed
  91. Nat Rev Mol Cell Biol. 2007 Jul;8(7):574-85 - PubMed
  92. Clin Rev Allergy Immunol. 2008 Feb;34(1):85-102 - PubMed
  93. Cell Mol Life Sci. 2000 Jun;57(6):914-31 - PubMed
  94. Front Genet. 2014 Apr 03;5:71 - PubMed
  95. Genome Biol. 2013 Nov 01;14(11):R122 - PubMed
  96. Immunol Rev. 1996 Aug;152:193-236 - PubMed
  97. J Autoimmun. 2009 Aug;33(1):12-6 - PubMed
  98. Curr Opin Genet Dev. 2012 Jun;22(3):191-203 - PubMed
  99. EMBO Rep. 2013 Aug;14(8):663-4 - PubMed
  100. Trends Genet. 2003 Aug;19(8):432-8 - PubMed
  101. Epigenetics Chromatin. 2013 May 01;6(1):10 - PubMed
  102. Cell. 2007 May 18;129(4):693-706 - PubMed
  103. Nature. 2003 Jan 16;421(6920):290-4 - PubMed
  104. Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7364-9 - PubMed
  105. Biochem Pharmacol. 1998 Apr 1;55(7):1119-23 - PubMed
  106. Nat Genet. 2001 May;28(1):77-81 - PubMed
  107. J Biol Chem. 2006 Nov 10;281(45):33871-80 - PubMed
  108. J Cell Biol. 1995 Jun;129(5):1181-93 - PubMed
  109. Blood. 1996 Mar 1;87(5):1663-81 - PubMed
  110. J Immunol. 1991 Apr 1;146(7):2249-52 - PubMed
  111. Nature. 2007 May 24;447(7143):396-8 - PubMed
  112. Nature. 2005 Mar 17;434(7031):325-37 - PubMed
  113. J Mol Biol. 2000 Aug 11;301(2):401-14 - PubMed
  114. Proc Natl Acad Sci U S A. 1999 Dec 7;96(25):14440-4 - PubMed
  115. Amino Acids. 2014 Mar;46(3):475-85 - PubMed
  116. Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18350-5 - PubMed
  117. Genes Dev. 2009 Apr 1;23(7):781-3 - PubMed
  118. Annu Rev Immunol. 1994;12:881-922 - PubMed
  119. Arthritis Rheum. 2006 Apr;54(4):1270-8 - PubMed
  120. Neurology. 2006 Jul 25;67(2):305-10 - PubMed
  121. Cancer Cell. 2005 May;7(5):433-44 - PubMed
  122. Br J Dermatol. 1990 May;122(5):643-50 - PubMed
  123. Genes Chromosomes Cancer. 2002 Jan;33(1):82-92 - PubMed
  124. Bioessays. 2011 Nov;33(11):791-802 - PubMed
  125. Genes Immun. 2009 Jul;10(5):478-81 - PubMed
  126. Nat Rev Microbiol. 2007 Feb;5(2):119-27 - PubMed
  127. J Cell Physiol. 1981 Dec;109(3):447-52 - PubMed
  128. Autoimmunity. 2014 Jun;47(4):265-71 - PubMed
  129. J Neurobiol. 1975 May;6(3):267-75 - PubMed
  130. Mol Cell. 2010 Oct 22;40(2):216-27 - PubMed
  131. BMC Neurol. 2013 Aug 28;13:111 - PubMed
  132. Cell Mol Life Sci. 2013 Jul;70(14):2443-61 - PubMed
  133. Nature. 2004 Nov 11;432(7014):231-5 - PubMed
  134. Am J Med Genet. 1990 Nov;37(3):406-11 - PubMed
  135. Ann Intern Med. 1972 May;76(5):747-50 - PubMed
  136. Cell. 1991 May 31;65(5):905-14 - PubMed
  137. Cell. 2005 May 20;121(4):529-39 - PubMed
  138. Genome Res. 2008 Aug;18(8):1259-69 - PubMed
  139. J Steroid Biochem Mol Biol. 1991 Aug;39(2):161-7 - PubMed
  140. J Clin Immunol. 1995 Nov;15(6):284-92 - PubMed
  141. Nat Genet. 2003 Nov;35(3):219-20 - PubMed
  142. Clin Chim Acta. 2011 Jul 15;412(15-16):1457-61 - PubMed
  143. Clin Chim Acta. 2010 Mar;411(5-6):359-63 - PubMed
  144. Arthritis Rheum. 1989 Jun;32(6):726-33 - PubMed
  145. J Autoimmun. 2009 May-Jun;32(3-4):189-94 - PubMed
  146. Nat Rev Rheumatol. 2009 May;5(5):266-72 - PubMed
  147. J Autoimmun. 2009 Aug;33(1):31-4 - PubMed

Publication Types