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Genome Announc. 2015 May 28;3(3). doi: 10.1128/genomeA.00526-15.

Draft genome sequences of 24 microbial strains assembled from direct sequencing from 4 stool samples.

Genome announcements

Patricio Jeraldo, Álvaro Hernández, Bryan A White, Daniel O'Brien, David Ahlquist, Lisa Boardman, Nicholas Chia

Affiliations

  1. Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
  2. Department of Health Sciences Research, Mayo Clinic, Rochester, Minnestota, USA.
  3. Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, USA.
  4. [email protected].

PMID: 26021920 PMCID: PMC4447905 DOI: 10.1128/genomeA.00526-15

Abstract

The ability to assemble genomes from metagenomic sequencing avoids the need for culture and any associated culture biases. We assembled 24 essentially complete draft genomes from metagenomic pair-end and size-selected mate pair sequencing from 4 stool samples, 2 from subjects diagnosed with colorectal cancer and 2 from healthy controls.

Copyright © 2015 Jeraldo et al.

References

  1. Genome Biol. 2012 Dec 22;13(12):R122 - PubMed
  2. CA Cancer J Clin. 2014 Mar-Apr;64(2):104-17 - PubMed
  3. PLoS One. 2013 Apr 25;8(4):e62510 - PubMed
  4. Nat Biotechnol. 2014 Aug;32(8):822-8 - PubMed
  5. Nat Biotechnol. 2013 Jun;31(6):533-8 - PubMed
  6. Bioinformatics. 2009 Jul 15;25(14):1754-60 - PubMed
  7. Genome Res. 2015 Jul;25(7):1043-55 - PubMed
  8. J Comput Biol. 2012 May;19(5):455-77 - PubMed
  9. Bioinformatics. 2014 Dec 1;30(23):3402-4 - PubMed

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