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Bhattacharya P, Barnebey A, Zemla M, et al. Complete genome sequence of the chromate-reducing bacterium Thermoanaerobacter thermohydrosulfuricus strain BSB-33. Stand Genomic Sci. 2015;10:74doi: 10.1186/s40793-015-0028-7.
Bhattacharya, P., Barnebey, A., Zemla, M., Goodwin, L., Auer, M., & Yannone, S. M. (2015). Complete genome sequence of the chromate-reducing bacterium Thermoanaerobacter thermohydrosulfuricus strain BSB-33. Standards in genomic sciences, 1074. https://doi.org/10.1186/s40793-015-0028-7
Bhattacharya, Pamela, et al. "Complete genome sequence of the chromate-reducing bacterium Thermoanaerobacter thermohydrosulfuricus strain BSB-33." Standards in genomic sciences vol. 10 (2015): 74. doi: https://doi.org/10.1186/s40793-015-0028-7
Bhattacharya P, Barnebey A, Zemla M, Goodwin L, Auer M, Yannone SM. Complete genome sequence of the chromate-reducing bacterium Thermoanaerobacter thermohydrosulfuricus strain BSB-33. Stand Genomic Sci. 2015 Oct 05;10:74. doi: 10.1186/s40793-015-0028-7. eCollection 2015. PMID: 26445627; PMCID: PMC4595116.
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Stand Genomic Sci. 2015 Oct 05;10:74. doi: 10.1186/s40793-015-0028-7. eCollection 2015.

Complete genome sequence of the chromate-reducing bacterium Thermoanaerobacter thermohydrosulfuricus strain BSB-33.

Standards in genomic sciences

Pamela Bhattacharya, Adam Barnebey, Marcin Zemla, Lynne Goodwin, Manfred Auer, Steven M Yannone

Affiliations

  1. Life Sciences Division, Lawrence Berkeley National Laboratory, Building 84, Mail Stop 84-171, 1 Cyclotron Road, Berkeley, CA 94720 USA.
  2. Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM USA.

PMID: 26445627 PMCID: PMC4595116 DOI: 10.1186/s40793-015-0028-7

Abstract

Thermoanaerobacter thermohydrosulfuricus BSB-33 is a thermophilic gram positive obligate anaerobe isolated from a hot spring in West Bengal, India. Unlike other T. thermohydrosulfuricus strains, BSB-33 is able to anaerobically reduce Fe(III) and Cr(VI) optimally at 60 °C. BSB-33 is the first Cr(VI) reducing T. thermohydrosulfuricus genome sequenced and of particular interest for bioremediation of environmental chromium contaminations. Here we discuss features of T. thermohydrosulfuricus BSB-33 and the unique genetic elements that may account for the peculiar metal reducing properties of this organism. The T. thermohydrosulfuricus BSB-33 genome comprises 2597606 bp encoding 2581 protein genes, 12 rRNA, 193 pseudogenes and has a G + C content of 34.20 %. Putative chromate reductases were identified by comparative analyses with other Thermoanaerobacter and chromate-reducing bacteria.

Keywords: Anaerobic; Bioremediation; Chromate; Chromium; Gram-positive; Metal; Reducing; Thermoanaerobacter; Thermophilic

References

  1. Appl Environ Microbiol. 1996 Oct;62(10):3557-9 - PubMed
  2. FEMS Microbiol Lett. 2008 Mar;280(2):210-8 - PubMed
  3. Genome Res. 2008 May;18(5):810-20 - PubMed
  4. J Bacteriol. 2009 Aug;191(15):4924-33 - PubMed
  5. Biometals. 2008 Jun;21(3):321-32 - PubMed
  6. Genome Res. 1998 Mar;8(3):195-202 - PubMed
  7. J Ind Microbiol. 1995 Feb;14(2):159-63 - PubMed
  8. PLoS One. 2013;8(3):e59362 - PubMed
  9. Nat Methods. 2010 Jun;7(6):455-7 - PubMed
  10. Mikrobiologiia. 1979 May-Jun;48(3):517-22 - PubMed
  11. Appl Microbiol Biotechnol. 1996 Jan;44(5):683-8 - PubMed
  12. Appl Environ Microbiol. 2002 Dec;68(12):6013-20 - PubMed
  13. Appl Environ Microbiol. 2006 Sep;72(9):6331-44 - PubMed
  14. J Biol Chem. 2005 Jun 17;280(24):22590-5 - PubMed
  15. Free Radic Biol Med. 1988;5(5-6):363-9 - PubMed
  16. Genome Res. 2008 May;18(5):821-9 - PubMed
  17. Nature. 2010 Aug 5;466(7307):779-82 - PubMed
  18. Genome Res. 1998 Mar;8(3):186-94 - PubMed
  19. Appl Environ Microbiol. 2001 Mar;67(3):1076-84 - PubMed
  20. Indian J Exp Biol. 2003 Sep;41(9):972-85 - PubMed
  21. Int J Syst Bacteriol. 1996 Jan;46(1):123-7 - PubMed
  22. Nat Biotechnol. 2008 May;26(5):541-7 - PubMed
  23. Curr Opin Biotechnol. 2012 Feb;23(1):89-95 - PubMed
  24. J Bacteriol. 2006 May;188(9):3371-81 - PubMed
  25. Stand Genomic Sci. 2010 Jan 28;2(1):117-34 - PubMed
  26. Nucleic Acids Res. 2003 Jan 1;31(1):371-3 - PubMed
  27. Int J Syst Evol Microbiol. 2007 Oct;57(Pt 10):2191-3 - PubMed
  28. Pharmacogenomics. 2004 Jun;5(4):433-8 - PubMed
  29. Syst Appl Microbiol. 2011 May;34(3):171-9 - PubMed
  30. Environ Sci Technol. 2008 Nov 15;42(22):8478-85 - PubMed
  31. Appl Environ Microbiol. 2003 Jul;69(7):4332-6 - PubMed
  32. Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4 - PubMed
  33. BMC Bioinformatics. 2010 Mar 08;11:119 - PubMed
  34. Environ Microbiol. 2004 Aug;6(8):851-60 - PubMed
  35. FEMS Microbiol Lett. 1994 Oct 1;122(3):233-7 - PubMed
  36. Mikrobiologiia. 1977 May-Jun;46(3):414-7 - PubMed
  37. J Mol Biol. 1990 Oct 5;215(3):403-10 - PubMed
  38. J Environ Qual. 2003 Jan-Feb;32(1):317-24 - PubMed
  39. Proc Natl Acad Sci U S A. 1974 Mar;71(3):612-6 - PubMed
  40. Int J Syst Evol Microbiol. 2010 May;60(Pt 5):1009-10 - PubMed
  41. Extremophiles. 2009 Jul;13(4):687-93 - PubMed
  42. Appl Environ Microbiol. 1990 Jul;56(7):2268-70 - PubMed
  43. Methods Enzymol. 2011;496:399-422 - PubMed
  44. Prog Nucleic Acid Res Mol Biol. 2004;78:89-142 - PubMed
  45. Biochemistry. 1997 Oct 7;36(40):12101-19 - PubMed
  46. FEMS Microbiol Ecol. 2011 Dec;78(3):473-87 - PubMed
  47. J Bacteriol. 2005 Dec;187(24):8437-49 - PubMed
  48. J Appl Microbiol. 2009 Jun;106(6):2006-16 - PubMed
  49. J Bacteriol. 2008 Apr;190(8):3076-82 - PubMed
  50. Science. 1965 Dec 17;150(3703):1585-7 - PubMed
  51. J Basic Microbiol. 2009 Jun;49(3):285-92 - PubMed
  52. Nucleic Acids Res. 2012 Jan;40(Database issue):D571-9 - PubMed
  53. Mol Biol Evol. 2007 Aug;24(8):1596-9 - PubMed
  54. Biotechnol Bioeng. 2002 Jun 30;78(7):770-8 - PubMed
  55. J Appl Microbiol. 2000 Jan;88(1):98-106 - PubMed
  56. Zentralbl Bakteriol Mikrobiol Hyg A. 1988 Jun;268(4):433-4 - PubMed
  57. J Hazard Mater. 2005 Feb 14;118(1-3):113-20 - PubMed
  58. Nat Genet. 2000 May;25(1):25-9 - PubMed
  59. Bioinformatics. 2009 Sep 1;25(17):2271-8 - PubMed
  60. J Biol Chem. 1997 May 30;272(22):14454-8 - PubMed
  61. Genome Res. 1998 Mar;8(3):175-85 - PubMed
  62. Int J Syst Bacteriol. 1999 Oct;49 Pt 4:1471-8 - PubMed
  63. Nucleic Acids Res. 2000 Jan 1;28(1):33-6 - PubMed
  64. Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9 - PubMed

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