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Sankar SA, Lo CI, Fall B, et al. Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. New Microbes New Infect. 2015;8:89-98doi: 10.1016/j.nmni.2015.09.013.
Sankar, S. A., Lo, C. I., Fall, B., Sambe-Ba, B., Mediannikov, O., Diallo, I., Labas, N., Faye, N., Wade, B., Raoult, D., Fournier, P. E., & Fenollar, F. (2015). Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. New microbes and new infections, 889-98. https://doi.org/10.1016/j.nmni.2015.09.013
Sankar, S A, et al. "Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov." New microbes and new infections vol. 8 (2015): 89-98. doi: https://doi.org/10.1016/j.nmni.2015.09.013
Sankar SA, Lo CI, Fall B, Sambe-Ba B, Mediannikov O, Diallo I, Labas N, Faye N, Wade B, Raoult D, Fournier PE, Fenollar F. Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. New Microbes New Infect. 2015 Oct 02;8:89-98. doi: 10.1016/j.nmni.2015.09.013. eCollection 2015 Nov. PMID: 26649182; PMCID: PMC4644262.
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New Microbes New Infect. 2015 Oct 02;8:89-98. doi: 10.1016/j.nmni.2015.09.013. eCollection 2015 Nov.

Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.

New microbes and new infections

S A Sankar, C I Lo, B Fall, B Sambe-Ba, O Mediannikov, I Diallo, N Labas, N Faye, B Wade, D Raoult, P-E Fournier, F Fenollar

Affiliations

  1. )Aix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, France.
  2. )Aix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, France ; )Campus International UCAD-IRD, Dakar, Senegal.
  3. )Hôpital Principal, Dakar, Senegal.
  4. )Université Cheikh Anta Diop de Dakar, Laboratoire de Parasitologie générale, Dakar, Senegal.
  5. )Aix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, France ; )Campus International UCAD-IRD, Dakar, Senegal ; )Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.

PMID: 26649182 PMCID: PMC4644262 DOI: 10.1016/j.nmni.2015.09.013

Abstract

Strain FF8(T) (= CSUR P860 = DSM 28259) was isolated in Dakar, Senegal, from the urine of a 65-year-old man with acute cystitis. This strain shows a similarity of sequence of 16S rRNA of 98.38% with Weeksella virosa, and its GenBank accession numbers are HG931340 and CCMH00000000. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis had a poor score, ranging from 1.32 to 1.56, that did not allow identification of the bacterium. Using a polyphasic study made of phenotypic and genomic analyses, strain FF8(T) was a Gram-negative, aerobic rod and a member of the family Flavobacteriaceae. The sequenced genome is 2 562 781 bp with one chromosome but no plasmid. It exhibits a G + C content of 35.9% and contains 2390 protein-coding and 56 RNA genes, including a complete rRNA operon. On the basis of these data, we propose the creation of Weeksella massiliensis sp. nov.

Keywords: Culturomics; Weeksella massiliensis; cystisis; genome; human; taxonogenomics; urine

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