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Kwak MJ, Kwon SK, Yoon JH, et al. Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea. Stand Genomic Sci. 2015;10:123doi: 10.1186/s40793-015-0116-8.
Kwak, M. J., Kwon, S. K., Yoon, J. H., & Kim, J. F. (2015). Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea. Standards in genomic sciences, 10123. https://doi.org/10.1186/s40793-015-0116-8
Kwak, Min-Jung, et al. "Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea." Standards in genomic sciences vol. 10 (2015): 123. doi: https://doi.org/10.1186/s40793-015-0116-8
Kwak MJ, Kwon SK, Yoon JH, Kim JF. Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea. Stand Genomic Sci. 2015 Dec 09;10:123. doi: 10.1186/s40793-015-0116-8. eCollection 2015. PMID: 26664701; PMCID: PMC4673725.
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Stand Genomic Sci. 2015 Dec 09;10:123. doi: 10.1186/s40793-015-0116-8. eCollection 2015.

Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea.

Standards in genomic sciences

Min-Jung Kwak, Soon-Kyeong Kwon, Jung-Hoon Yoon, Jihyun F Kim

Affiliations

  1. Department of Systems Biology and Division of Life Sciences, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749 Republic of Korea.
  2. Department of Food Science and Biotechnology, Sungkyunkwan University, Suwon, Republic of Korea.

PMID: 26664701 PMCID: PMC4673725 DOI: 10.1186/s40793-015-0116-8

Abstract

Lysobacter dokdonensis DS-58, belonging to the family Xanthomonadaceae, was isolated from a soil sample in Dokdo, Korea in 2011. Strain DS-58 is the type strain of L. dokdonensis. In this study, we determined the genome sequence to describe the genomic features including annotation information and COG functional categorization. The draft genome sequence consists of 25 contigs totaling 3,274,406 bp (67.24 % G + C) and contains 3,155 protein coding genes, 2 copies of ribosomal RNA operons, and 48 transfer RNA genes. Among the protein coding genes, 75.91 % of the genes were annotated with a putative function and 87.39 % of the genes were assigned to the COG category. In the genome of L. dokdonensis, a large number of genes associated with protein degradation and antibiotic resistance were detected.

Keywords: Dokdo; Peptidase; Protease; Soil bacterium; Xanthomonadaceae

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