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Jo Y, Lian S, Cho JK, et al. De novo transcriptome assembly of two different Prunus mume cultivars. Genom Data. 2015;6:273-4doi: 10.1016/j.gdata.2015.10.011.
Jo, Y., Lian, S., Cho, J. K., Choi, H., Chu, H., & Cho, W. K. (2015). De novo transcriptome assembly of two different Prunus mume cultivars. Genomics data, 6273-4. https://doi.org/10.1016/j.gdata.2015.10.011
Jo, Yeonhwa, et al. "De novo transcriptome assembly of two different Prunus mume cultivars." Genomics data vol. 6 (2015): 273-4. doi: https://doi.org/10.1016/j.gdata.2015.10.011
Jo Y, Lian S, Cho JK, Choi H, Chu H, Cho WK. De novo transcriptome assembly of two different Prunus mume cultivars. Genom Data. 2015 Oct 19;6:273-4. doi: 10.1016/j.gdata.2015.10.011. eCollection 2015 Dec. PMID: 26697396; PMCID: PMC4664763.
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Genom Data. 2015 Oct 19;6:273-4. doi: 10.1016/j.gdata.2015.10.011. eCollection 2015 Dec.

De novo transcriptome assembly of two different Prunus mume cultivars.

Genomics data

Yeonhwa Jo, Sen Lian, Jin Kyong Cho, Hoseong Choi, Hyosub Chu, Won Kyong Cho

Affiliations

  1. Department of Agricultural Biotechnology, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea.
  2. Department of Fruit Tree, Korea National College of Agriculture and Fisheries, Jeonju 560-500, Republic of Korea.

PMID: 26697396 PMCID: PMC4664763 DOI: 10.1016/j.gdata.2015.10.011

Abstract

Prunus mume, belonging to the Prunus genus, is an Asian tree, and its common names are Chinese plum and Japanese plum. P. mume are cultivated for fruit production as well as ornamental purposes. In this study, we conducted de novo transcriptome assembly for two selected P. mume cultivars referred to as Takada and Wallyoung (commercially important cultivars for fruit production and ornamental trees, respectively) by RNA-sequencing. We obtained 9.14 GB and 9.48 GB sequence data from Takada and Wallyoung (NCBI accession numbers: SRX1187101 and SRX1187169), respectively. De novo transcriptome assembly identified 130,989 and 116,941 transcripts for Takada and Wallyoung, respectively. In addition, we identified 96,681 and 91,429 proteins from Takada and Wallyoung, respectively, by TransDecoder program. We performed BLASTP against the NCBI non-redundant (nr) datasets to annotate identified proteins. This study provides transcriptomes and proteomes for two different P. mume cultivars, which might be useful for comparative transcriptome analyses and assist development of genetic markers.

Keywords: Cultivar; Prunus mume; RNA-Seq; Transcriptome

References

  1. Nat Biotechnol. 2011 May 15;29(7):644-52 - PubMed
  2. Nat Commun. 2012;3:1318 - PubMed
  3. PLoS One. 2013;8(3):e59562 - PubMed
  4. BMC Genet. 2013 Oct 06;14:98 - PubMed

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