Display options
Share it on

Front Microbiol. 2016 Aug 30;7:1353. doi: 10.3389/fmicb.2016.01353. eCollection 2016.

Primary Succession of Nitrogen Cycling Microbial Communities Along the Deglaciated Forelands of Tianshan Mountain, China.

Frontiers in microbiology

Jun Zeng, Kai Lou, Cui-Jing Zhang, Jun-Tao Wang, Hang-Wei Hu, Ju-Pei Shen, Li-Mei Zhang, Li-Li Han, Tao Zhang, Qin Lin, Phillip M Chalk, Ji-Zheng He

Affiliations

  1. State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of SciencesBeijing, China; College of Resources and Environment, University of Chinese Academy of SciencesBeijing, China; Institute of Applied Microbiology, Xinjiang Academy of Agricultural SciencesUrumqi, China.
  2. Institute of Applied Microbiology, Xinjiang Academy of Agricultural Sciences Urumqi, China.
  3. State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of SciencesBeijing, China; College of Resources and Environment, University of Chinese Academy of SciencesBeijing, China.
  4. State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences Beijing, China.
  5. Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne VIC, Australia.
  6. State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of SciencesBeijing, China; Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, MelbourneVIC, Australia.

PMID: 27625641 PMCID: PMC5003921 DOI: 10.3389/fmicb.2016.01353

Abstract

Structural succession and its driving factors for nitrogen (N) cycling microbial communities during the early stages of soil development (0-44 years) were studied along a chronosequence in the glacial forelands of the Tianshan Mountain No.1 glacier in the arid and semi-arid region of central Asia. We assessed the abundance and population of functional genes affiliated with N-fixation (nifH), nitrification (bacterial and archaeal amoA), and denitrification (nirK/S and nosZ) in a glacier foreland using molecular methods. The abundance of functional genes significantly increased with soil development. N cycling community compositions were also significantly shifted within 44 years and were structured by successional age. Cyanobacterial nifH gene sequences were the most dominant N fixing bacteria and its relative abundance increased from 56.8-93.2% along the chronosequence. Ammonia-oxidizing communities shifted from the Nitrososphaera cluster (AOA-amoA) and the Nitrosospira cluster ME (AOB-aomA) in younger soils (0 and 5 years) to communities dominated by soil and sediment 1 (AOA-amoA) and Nitrosospira Cluster 2 Related (AOB-aomA) in older soils (≥17 years). Most of the denitrifers closest relatives were potential aerobic denitrifying bacteria, and some other types of denitrifying bacteria (like autotrophic nitrate-reducing, sulfide-oxidizing bacteria and denitrifying phosphorus removing bacteria) were also detected in all soil samples. The regression analysis showed that N cycling microbial communities were dominant in younger soils (0-5 years) and significantly correlated with soil total carbon, while communities that were most abundant in older soils were significantly correlated with soil total nitrogen. These results suggested that the shift of soil C and N contents during the glacial retreat significantly influenced the abundance, composition and diversity of N cycling microbial communities.

Keywords: N cycling microbial community; Tianshan Mountain; glacier foreland; primary succession; soil carbon and nitrogen

References

  1. Appl Environ Microbiol. 2006 Aug;72(8):5181-9 - PubMed
  2. FEMS Microbiol Ecol. 2011 Oct;78(1):3-16 - PubMed
  3. Appl Environ Microbiol. 2003 Oct;69(10):6152-64 - PubMed
  4. Microb Ecol. 2002 May;43(4):397-407 - PubMed
  5. Ecol Lett. 2011 Dec;14(12):1227-35 - PubMed
  6. J Biosci Bioeng. 2005 Aug;100(2):184-91 - PubMed
  7. Environ Microbiol. 2002 Aug;4(8):477-81 - PubMed
  8. Appl Environ Microbiol. 1997 Dec;63(12):4704-12 - PubMed
  9. Bioresour Technol. 2012 Jul;116:266-70 - PubMed
  10. FEMS Microbiol Ecol. 2012 Apr;80(1):146-58 - PubMed
  11. ISME J. 2011 Jun;5(6):1025-37 - PubMed
  12. Appl Environ Microbiol. 2000 Apr;66(4):1564-71 - PubMed
  13. Environ Microbiol. 2014 Oct;16(10):3250-62 - PubMed
  14. Environ Microbiol. 2007 Sep;9(9):2364-74 - PubMed
  15. Can J Microbiol. 2005 Aug;51(8):709-14 - PubMed
  16. Nat Methods. 2010 May;7(5):335-6 - PubMed
  17. Appl Environ Microbiol. 2004 Feb;70(2):973-83 - PubMed
  18. Environ Microbiol. 2008 Jun;10(6):1601-11 - PubMed
  19. Int J Syst Evol Microbiol. 2011 Jul;61(Pt 7):1651-5 - PubMed
  20. Environ Microbiol. 2006 Sep;8(9):1600-12 - PubMed
  21. PLoS One. 2012;7(7):e42149 - PubMed
  22. Bioprocess Biosyst Eng. 2012 Jun;35(5):721-8 - PubMed
  23. FEMS Microbiol Ecol. 2004 Sep 1;49(3):401-17 - PubMed
  24. FEMS Microbiol Ecol. 2010 Jun;72(3):418-28 - PubMed
  25. Science. 2004 Jul 23;305(5683):509-13 - PubMed
  26. Appl Environ Microbiol. 2006 Sep;72(9):5957-62 - PubMed
  27. Microb Ecol. 2009 Jan;57(1):179-90 - PubMed
  28. FEMS Microbiol Ecol. 2009 Nov;70(2):52-61 - PubMed
  29. Microb Ecol. 2007 Jan;53(1):110-22 - PubMed

Publication Types