Display options
Share it on

PLoS Biol. 2016 Sep 29;14(9):e1002558. doi: 10.1371/journal.pbio.1002558. eCollection 2016 Sep.

Disruption of an Evolutionarily Novel Synaptic Expression Pattern in Autism.

PLoS biology

Xiling Liu, Dingding Han, Mehmet Somel, Xi Jiang, Haiyang Hu, Patricia Guijarro, Ning Zhang, Amanda Mitchell, Tobias Halene, John J Ely, Chet C Sherwood, Patrick R Hof, Zilong Qiu, Svante Pääbo, Schahram Akbarian, Philipp Khaitovich

Affiliations

  1. CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai, China.
  2. Big Data Decision Institute, Jinan University, Guangzhou, China.
  3. Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Sciences, Ministry of Justice, Shanghai, China.
  4. Department of Biological Sciences, Middle East Technical University, Ankara, Turkey.
  5. Department of Psychiatry and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.
  6. MAEBIOS-TM, Alamogordo, New Mexico, United States of America.
  7. Department of Anthropology, The George Washington University, Washington, District of Columbia, United States of America.
  8. Fishberg Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.
  9. Institute of Neuroscience, Chinese Academy of Sciences, Shanghai, China.
  10. Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
  11. Skolkovo Institute for Science and Technology, Skolkovo, Russia.

PMID: 27685936 PMCID: PMC5042529 DOI: 10.1371/journal.pbio.1002558

Abstract

Cognitive defects in autism spectrum disorder (ASD) include socialization and communication: key behavioral capacities that separate humans from other species. Here, we analyze gene expression in the prefrontal cortex of 63 autism patients and control individuals, as well as 62 chimpanzees and macaques, from natal to adult age. We show that among all aberrant expression changes seen in ASD brains, a single aberrant expression pattern overrepresented in genes involved synaptic-related pathways is enriched in nucleotide variants linked to autism. Furthermore, only this pattern contains an excess of developmental expression features unique to humans, thus resulting in the disruption of human-specific developmental programs in autism. Several members of the early growth response (EGR) transcription factor family can be implicated in regulation of this aberrant developmental change. Our study draws a connection between the genetic risk architecture of autism and molecular features of cortical development unique to humans.

Conflict of interest statement

The authors have declared that no competing interests exist.

References

  1. Neuron. 2014 Sep 3;83(5):1131-43 - PubMed
  2. J Neurosci. 2004 Jul 14;24(28):6392-401 - PubMed
  3. Genome Res. 2012 Apr;22(4):611-22 - PubMed
  4. PLoS Genet. 2012;8(3):e1002592 - PubMed
  5. JAMA. 2011 Nov 9;306(18):2001-10 - PubMed
  6. Neuroscience. 2007 Nov 9;149(3):582-91 - PubMed
  7. Nucleic Acids Res. 2012 Jan;40(Database issue):D1016-22 - PubMed
  8. Dev Psychopathol. 2006 Spring;18(2):381-93 - PubMed
  9. Curr Opin Genet Dev. 2013 Jun;23(3):310-5 - PubMed
  10. J Neurochem. 2015 May;133(4):489-500 - PubMed
  11. Philos Trans R Soc Lond B Biol Sci. 2009 Aug 27;364(1528):2405-15 - PubMed
  12. Mol Cell Neurosci. 2007 May;35(1):76-88 - PubMed
  13. Philos Trans R Soc Lond B Biol Sci. 2009 May 27;364(1522):1377-83 - PubMed
  14. Mol Psychiatry. 2007 Jan;12(1):2-22 - PubMed
  15. J Am Acad Child Adolesc Psychiatry. 1990 Nov;29(6):863-72 - PubMed
  16. Neuron. 2015 Sep 23;87(6):1215-33 - PubMed
  17. Nature. 2016 Feb 4;530(7588):98-102 - PubMed
  18. Biochem Pharmacol. 2002 Apr 15;63(8):1507-16 - PubMed
  19. Proc Natl Acad Sci U S A. 2011 Jun 28;108 Suppl 2:10918-25 - PubMed
  20. Cell. 2013 Nov 21;155(5):1008-21 - PubMed
  21. Behav Brain Res. 2003 Jun 16;142(1-2):17-30 - PubMed
  22. Science. 1986 Apr 11;232(4747):232-5 - PubMed
  23. Nat Neurosci. 2011 Oct 30;14(12):1499-506 - PubMed
  24. Nat Commun. 2014 Dec 10;5:5748 - PubMed
  25. Curr Dir Psychol Sci. 2009;18(5):259-263 - PubMed
  26. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5743-8 - PubMed
  27. PLoS Biol. 2011 Dec;9(12):e1001214 - PubMed
  28. Genes Brain Behav. 2003 Oct;2(5):255-67 - PubMed
  29. Brain. 2004 Aug;127(Pt 8):1811-21 - PubMed
  30. Genome Res. 2005 Aug;15(8):1034-50 - PubMed
  31. Neurobiol Dis. 2008 Jun;30(3):303-11 - PubMed
  32. J Comp Neurol. 1997 Oct 20;387(2):167-78 - PubMed
  33. Cell. 2008 Oct 31;135(3):396-400 - PubMed
  34. Behav Brain Sci. 2005 Oct;28(5):675-91; discussion 691-735 - PubMed
  35. Am J Psychiatry. 2012 Jun;169(6):589-600 - PubMed
  36. MMWR Surveill Summ. 2014 Mar 28;63(2):1-21 - PubMed
  37. Nat Genet. 1999 Oct;23(2):185-8 - PubMed
  38. Nucleic Acids Res. 2009 Jan;37(Database issue):D832-6 - PubMed
  39. J Clin Exp Neuropsychol. 1988 Mar;10(2):201-21 - PubMed
  40. Prog Neurobiol. 2004 Nov;74(4):183-211 - PubMed
  41. Lancet. 2014 Mar 8;383(9920):896-910 - PubMed
  42. Mol Psychiatry. 2004 Jul;9(7):646-63 - PubMed
  43. Neurology. 2001 Jul 24;57(2):245-54 - PubMed
  44. Nat Genet. 2014 Aug;46(8):881-5 - PubMed
  45. Mol Psychiatry. 2015 Jul;20(7):839-49 - PubMed
  46. J Neurosci. 2008 Jan 2;28(1):264-78 - PubMed
  47. Genome Res. 2010 Sep;20(9):1207-18 - PubMed
  48. Trends Cogn Sci. 2011 Sep;15(9):409-16 - PubMed
  49. Cell. 2012 Dec 21;151(7):1431-42 - PubMed
  50. BMC Genomics. 2006 May 18;7:118 - PubMed
  51. Genome Biol. 2009;10(3):R25 - PubMed
  52. JAMA Pediatr. 2015 Jan;169(1):56-62 - PubMed
  53. Arch Gen Psychiatry. 2012 Mar;69(3):314-24 - PubMed
  54. Brain Res. 2010 Jan 14;1309:83-94 - PubMed
  55. Nature. 2011 May 25;474(7351):380-4 - PubMed
  56. Nucleic Acids Res. 2003 Jul 1;31(13):3576-9 - PubMed
  57. Cell. 2013 Nov 21;155(5):997-1007 - PubMed
  58. JAMA. 2003 Jul 16;290(3):337-44 - PubMed
  59. Philos Trans R Soc Lond B Biol Sci. 2012 Aug 5;367(1599):2119-29 - PubMed
  60. J Neurosci. 2004 Oct 20;24(42):9228-31 - PubMed
  61. J Autism Dev Disord. 2014 Jan;44(1):31-40 - PubMed
  62. Biol Psychiatry. 2007 Feb 15;61(4):458-64 - PubMed
  63. Science. 2007 Sep 7;317(5843):1360-6 - PubMed
  64. Dev Psychopathol. 2002 Spring;14(2):209-24 - PubMed
  65. Hum Mol Genet. 2009 Feb 1;18(3):525-34 - PubMed

Publication Types

Grant support