Display options
Share it on

Proteomes. 2015 Dec 14;3(4):467-495. doi: 10.3390/proteomes3040467.

Challenges and Strategies for Proteome Analysis of the Interaction of Human Pathogenic Fungi with Host Immune Cells.

Proteomes

Thomas Krüger, Ting Luo, Hella Schmidt, Iordana Shopova, Olaf Kniemeyer

Affiliations

  1. Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Str. 23, 07745 Jena, Germany. [email protected].
  2. Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Str. 23, 07745 Jena, Germany. [email protected].
  3. Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Str. 23, 07745 Jena, Germany. [email protected].
  4. Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Str. 23, 07745 Jena, Germany. [email protected].
  5. Institute of Microbiology, Friedrich Schiller University Jena, Adolf-Reichwein-Str. 23, 07745 Jena, Germany. [email protected].
  6. Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Adolf-Reichwein-Str. 23, 07745 Jena, Germany. [email protected].
  7. Institute of Microbiology, Friedrich Schiller University Jena, Adolf-Reichwein-Str. 23, 07745 Jena, Germany. [email protected].

PMID: 28248281 PMCID: PMC5217390 DOI: 10.3390/proteomes3040467

Abstract

Opportunistic human pathogenic fungi including the saprotrophic mold

Keywords: Aspergillus fumigatus; Candida albicans; fungal infections; host-pathogen interaction; immunoproteomics; macrophages; mass spectrometry; neutrophils; phagolysosome

References

  1. J Proteomics. 2016 Feb 16;134:144-62 - PubMed
  2. Proteomics. 2001 Jul;1(7):890-8 - PubMed
  3. FEMS Yeast Res. 2006 Jan;6(1):14-29 - PubMed
  4. J Immunol Methods. 2002 Mar 1;261(1-2):85-101 - PubMed
  5. J Proteome Res. 2012 May 4;11(5):2635-43 - PubMed
  6. FEMS Microbiol Lett. 2011 Nov;324(1):1-9 - PubMed
  7. PLoS Pathog. 2005 Dec;1(4):e42 - PubMed
  8. Proteomics. 2009 Oct;9(20):4664-8 - PubMed
  9. J Proteomics. 2014 May 30;103:72-86 - PubMed
  10. Proteomics. 2006 Apr;6 Suppl 1:S133-44 - PubMed
  11. Infect Immun. 2006 Dec;74(12):6528-39 - PubMed
  12. J Immunol Methods. 1997 Mar 28;202(2):183-91 - PubMed
  13. Mycoses. 2013 Jul;56(4):403-13 - PubMed
  14. Nucleic Acids Res. 2000 Jan 1;28(1):27-30 - PubMed
  15. Curr Opin Microbiol. 2002 Aug;5(4):359-65 - PubMed
  16. Clin Chim Acta. 2012 May 18;413(9-10):938-43 - PubMed
  17. Thorax. 2015 Mar;70(3):270-7 - PubMed
  18. Infect Immun. 2010 Feb;78(2):823-9 - PubMed
  19. J Proteome Res. 2012 May 4;11(5):2890-903 - PubMed
  20. Nature. 2009 Aug 27;460(7259):1117-21 - PubMed
  21. J Proteome Res. 2012 Jul 6;11(7):3914-20 - PubMed
  22. Semin Immunopathol. 2015 Mar;37(2):141-52 - PubMed
  23. Clin Microbiol Rev. 2012 Jul;25(3):387-408 - PubMed
  24. Biochem Biophys Res Commun. 1978 Oct 16;84(3):611-7 - PubMed
  25. J Infect Dis. 2008 Jul 15;198(2):193-202 - PubMed
  26. Electrophoresis. 1999 Dec;20(18):3611-22 - PubMed
  27. J Proteome Res. 2014 May 2;13(5):2468-77 - PubMed
  28. Infect Immun. 2007 Mar;75(3):1493-501 - PubMed
  29. FEBS Lett. 1996 Feb 12;380(1-2):198-203 - PubMed
  30. Med Microbiol Immunol. 1998 Oct;187(2):79-89 - PubMed
  31. Proteomics. 2014 Jun;14(12):1503-18 - PubMed
  32. Proteomics. 2007 Jun;7(11):1757-70 - PubMed
  33. PLoS One. 2015 Aug 14;10 (8):e0135720 - PubMed
  34. FEBS J. 2015 Apr;282(8):1406-18 - PubMed
  35. Microbes Infect. 2011 Feb;13(2):151-9 - PubMed
  36. Cancer Inform. 2014 Oct 16;13:109-17 - PubMed
  37. Cell Microbiol. 2006 Apr;8(4):668-76 - PubMed
  38. Nat Methods. 2011 Oct 02;8(11):937-40 - PubMed
  39. Proteomics Clin Appl. 2008 Feb;2(2):167-80 - PubMed
  40. Proteomics. 2004 Oct;4(10):3084-106 - PubMed
  41. J Proteome Res. 2014 Aug 1;13(8):3826-36 - PubMed
  42. Protein Pept Lett. 2006;13(5):481-7 - PubMed
  43. Nat Biotechnol. 2015 Jan;33(1):22-4 - PubMed
  44. Virulence. 2013 Feb 15;4(2):119-28 - PubMed
  45. Proteomics. 2009 Apr;9(7):2037-49 - PubMed
  46. PLoS Pathog. 2010 Mar 26;6(3):e1000827 - PubMed
  47. J Immunol. 2009 Apr 15;182(8):4938-46 - PubMed
  48. Nature. 2004 Oct 21;431(7011):931-45 - PubMed
  49. J Bacteriol. 1998 Jun;180(12):3031-8 - PubMed
  50. Nat Rev Immunol. 2011 Apr;11(4):275-88 - PubMed
  51. Electrophoresis. 2000 Apr;21(6):1104-15 - PubMed
  52. Cold Spring Harb Perspect Med. 2014 Nov 03;5(1):a019273 - PubMed
  53. Nature. 2005 Dec 22;438(7071):1151-6 - PubMed
  54. Allergy. 2009 Aug;64(8):1144-51 - PubMed
  55. Anal Chim Acta. 2013 May 7;776:1-10 - PubMed
  56. J Proteome Res. 2014 Mar 7;13(3):1270-80 - PubMed
  57. PLoS One. 2013 Sep 20;8(9):e75141 - PubMed
  58. AMB Express. 2015 Dec;5(1):127 - PubMed
  59. J Mol Biol. 2004 Jul 16;340(4):783-95 - PubMed
  60. Proc Natl Acad Sci U S A. 2004 May 11;101(19):7329-34 - PubMed
  61. J Cell Biol. 1994 Mar;124(5):677-88 - PubMed
  62. Cell Microbiol. 2007 Feb;9(2):368-81 - PubMed
  63. J Infect. 2014 Nov;69 Suppl 1:S36-41 - PubMed
  64. PLoS Pathog. 2010 Apr 22;6(4):e1000758 - PubMed
  65. PLoS Pathog. 2010 Apr 29;6(4):e1000873 - PubMed
  66. PLoS Pathog. 2012;8(11):e1003025 - PubMed
  67. PLoS One. 2011 Jan 14;6(1):e16016 - PubMed
  68. J Proteome Res. 2010 Apr 5;9(4):2030-6 - PubMed
  69. PLoS Pathog. 2006 Apr;2(4):e35 - PubMed
  70. J Proteome Res. 2014 Apr 4;13(4):2109-19 - PubMed
  71. Sci Rep. 2015 Jan 26;5:8008 - PubMed
  72. J Immunol. 2006 Mar 15;176(6):3717-24 - PubMed
  73. Curr Drug Targets. 2005 Dec;6(8):875-86 - PubMed
  74. Nucleic Acids Res. 2013 Jan;41(Database issue):D793-800 - PubMed
  75. Proteomics. 2015 Apr;15(8):1453-6 - PubMed
  76. Microbiol Res. 2013 Aug 25;168(7):396-406 - PubMed
  77. Microbes Infect. 2001 Aug;3(10):831-40 - PubMed
  78. Fungal Genet Biol. 2014 Apr;65:48-56 - PubMed
  79. Nat Biotechnol. 2012 Oct;30(10):984-90 - PubMed
  80. Hum Genomics. 2015 Oct 28;9:28 - PubMed
  81. FEMS Immunol Med Microbiol. 2012 Mar;64(2):147-61 - PubMed
  82. PLoS Pathog. 2009 Oct;5(10):e1000639 - PubMed
  83. PLoS Pathog. 2013;9(9):e1003550 - PubMed
  84. Commun Integr Biol. 2009;2(2):107-9 - PubMed
  85. Crit Rev Immunol. 2012;32(6):463-88 - PubMed
  86. Proteomics. 2009 Jun;9(11):2995-3010 - PubMed
  87. Sci Rep. 2013;3:1328 - PubMed
  88. J Proteome Res. 2012 Jan 1;11(1):143-56 - PubMed
  89. Cell Microbiol. 2014 Jul;16(7):1034-52 - PubMed
  90. J Proteomics. 2013 Oct 8;91:106-35 - PubMed
  91. J Immunol. 2004 Mar 1;172(5):3059-69 - PubMed
  92. Eukaryot Cell. 2004 Oct;3(5):1076-87 - PubMed
  93. Proteomics. 2010 Aug;10(15):2801-11 - PubMed
  94. Anal Chem. 2013 Aug 20;85(16):7777-85 - PubMed
  95. Mol Cell Proteomics. 2006 Jan;5(1):79-96 - PubMed
  96. BMC Genomics. 2010 Jun 04;11:358 - PubMed
  97. Cell Microbiol. 2009 Apr;11(4):560-89 - PubMed
  98. J Proteomics. 2015 Oct 14;128:203-17 - PubMed
  99. Infect Immun. 2003 Jun;71(6):3034-42 - PubMed
  100. Front Microbiol. 2011 May 03;2:96 - PubMed
  101. Ann N Y Acad Sci. 2012 Dec;1273:68-73 - PubMed
  102. J Proteome Res. 2011 Sep 2;10(9):4018-32 - PubMed
  103. J Clin Microbiol. 2009 Oct;47(10):3138-41 - PubMed
  104. J Microbiol Methods. 2014 Jun;101:56-62 - PubMed
  105. Virulence. 2014 Jan 1;5(1):161-9 - PubMed
  106. PLoS Pathog. 2011 May;7(5):e1001340 - PubMed
  107. Curr Opin Microbiol. 2010 Aug;13(4):392-400 - PubMed
  108. Med Mycol. 2001;39 Suppl 1:9-17 - PubMed
  109. J Proteome Res. 2013 May 3;12(5):2055-66 - PubMed
  110. J Infect Dis. 2003 Jul 15;188(2):320-6 - PubMed
  111. Cell Microbiol. 2007 Dec;9(12):2938-54 - PubMed
  112. Curr Opin Chem Biol. 2006 Feb;10(1):67-72 - PubMed
  113. Eur J Clin Microbiol Infect Dis. 2013 Nov;32(11):1377-91 - PubMed
  114. Mol Cell Proteomics. 2002 Nov;1(11):845-67 - PubMed
  115. Nat Rev Microbiol. 2007 Apr;5(4):298-308 - PubMed
  116. Curr Opin Microbiol. 2010 Aug;13(4):409-15 - PubMed
  117. Nat Protoc. 2012 Apr 12;7(5):882-90 - PubMed
  118. Annu Rev Immunol. 2002;20:825-52 - PubMed
  119. J Proteomics. 2014 Jan 31;97:126-40 - PubMed
  120. Clin Microbiol Rev. 2007 Jan;20(1):133-63 - PubMed
  121. Cell Microbiol. 2003 Aug;5(8):561-70 - PubMed
  122. Infect Immun. 2003 Feb;71(2):891-903 - PubMed
  123. J Immunol. 2004 Nov 1;173(9):5635-43 - PubMed
  124. J Proteome Res. 2008 Nov;7(11):4756-65 - PubMed
  125. Proteome Sci. 2009 Aug 31;7:32 - PubMed
  126. J Infect Dis. 2009 Aug 15;200(4):647-56 - PubMed
  127. Microbes Infect. 2010 Nov;12(12-13):928-36 - PubMed
  128. Infect Immun. 2006 Dec;74(12):6514-6 - PubMed
  129. Genesis. 2008 Sep;46(9):447-62 - PubMed
  130. J Proteome Res. 2014 Nov 7;13(11):5165-84 - PubMed
  131. Nat Rev Immunol. 2003 Apr;3(4):280-91 - PubMed
  132. J Chromatogr B Analyt Technol Biomed Life Sci. 2013 Sep 1;934:66-70 - PubMed
  133. Proteome Sci. 2011 Nov 14;9:70 - PubMed
  134. Mol Cell Proteomics. 2010 Jan;9(1):32-53 - PubMed
  135. Sci Transl Med. 2012 Dec 19;4(165):165rv13 - PubMed
  136. Virulence. 2012 Nov 15;3(7):635-46 - PubMed
  137. J Proteomics. 2012 Aug 3;75(15):4734-46 - PubMed
  138. Proteomics. 2006 Jul;6(14):4100-5 - PubMed
  139. PLoS Comput Biol. 2014 Feb 20;10(2):e1003479 - PubMed
  140. J Infect Dis. 2012 Apr 1;205(7):1163-72 - PubMed
  141. Clin Infect Dis. 2012 Feb;54 Suppl 1:S23-34 - PubMed
  142. Curr Pharm Des. 2013;19(20):3713-37 - PubMed
  143. Proc Am Thorac Soc. 2010 May;7(3):186-96 - PubMed
  144. Nat Genet. 1995 Feb;9(2):202-9 - PubMed
  145. Nucleic Acids Res. 2004 Oct 14;32(18):5539-45 - PubMed
  146. Curr Opin Microbiol. 2007 Aug;10(4):314-9 - PubMed
  147. Mol Cells. 2005 Oct 31;20(2):271-9 - PubMed
  148. Clin Microbiol Rev. 2014 Oct;27(4):980-1024 - PubMed
  149. Arthritis Res Ther. 2012 Feb 02;14(1):R25 - PubMed
  150. Mol Cell Proteomics. 2007 Mar;6(3):460-78 - PubMed
  151. PLoS One. 2011;6(5):e20527 - PubMed
  152. PLoS Genet. 2005 Jul;1(1):36-57 - PubMed
  153. Curr Opin Microbiol. 2005 Aug;8(4):385-92 - PubMed
  154. Infect Immun. 2005 Jan;73(1):114-25 - PubMed
  155. Microbiology. 2015 May;161(Pt 5):1008-17 - PubMed
  156. FEMS Yeast Res. 2009 Aug;9(5):688-700 - PubMed
  157. Traffic. 2013 Mar;14(3):321-36 - PubMed
  158. FEMS Microbiol Lett. 2010 Jun;307(1):1-11 - PubMed
  159. J Proteome Res. 2010 Dec 3;9(12):6759-73 - PubMed
  160. J Leukoc Biol. 2013 Oct;94(4):711-21 - PubMed
  161. Nat Med. 2002 Mar;8(3):295-301 - PubMed
  162. PLoS One. 2008 Jul 09;3(7):e2655 - PubMed

Publication Types