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PeerJ. 2017 Feb 23;5:e2936. doi: 10.7717/peerj.2936. eCollection 2017.

Genetic diversity and differentiation in reef-building .

PeerJ

Caroline E Dubé, Serge Planes, Yuxiang Zhou, Véronique Berteaux-Lecellier, Emilie Boissin

Affiliations

  1. EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, F-66860, Perpignan, France; Laboratoire d'excellence "CORAIL", EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Papetoai, Moorea, French Polynesia.
  2. EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, F-66860 , Perpignan , France.
  3. Laboratoire d'excellence "CORAIL", EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Papetoai, Moorea, French Polynesia; ENTROPIE, UMR250/9220-IRD/CNRS/UR, Laboratoire d'excellence "CORAIL", Nouméa, New-Caledonia.

PMID: 28243525 PMCID: PMC5326544 DOI: 10.7717/peerj.2936

Abstract

Quantifying the genetic diversity in natural populations is crucial to address ecological and evolutionary questions. Despite recent advances in whole-genome sequencing, microsatellite markers have remained one of the most powerful tools for a myriad of population genetic approaches. Here, we used the 454 sequencing technique to develop microsatellite loci in the fire coral

Keywords: Cross-species transferability; Genetic distance; Genetic diversity; Microsatellites; Millepora

Conflict of interest statement

The authors declare there are no competing interests.

References

  1. Genome Res. 2000 Jul;10(7):967-81 - PubMed
  2. Chromosoma. 2000 Sep;109(6):365-71 - PubMed
  3. Mol Ecol. 2001 Jan;10(1):249-56 - PubMed
  4. Evolution. 2004 Feb;58(2):324-37 - PubMed
  5. Nature. 2004 Jun 24;429(6994):827-33 - PubMed
  6. Mol Ecol. 2005 Apr;14(5):1377-90 - PubMed
  7. Ecol Lett. 2006 May;9(5):615-29 - PubMed
  8. Science. 2006 May 12;312(5775):857-8 - PubMed
  9. Adv Mar Biol. 2006;50:1-55 - PubMed
  10. Science. 1980 Aug 8;209(4457):689-91 - PubMed
  11. Mol Ecol. 2007 Sep;16(18):3759-67 - PubMed
  12. Trends Ecol Evol. 2008 Jan;23(1):38-44 - PubMed
  13. Science. 2007 Dec 14;318(5857):1737-42 - PubMed
  14. Mol Ecol. 2008 Jun;17(12):2796-811 - PubMed
  15. Proc Biol Sci. 2009 Nov 22;276(1675):3927-35 - PubMed
  16. Bioinformatics. 2010 Feb 1;26(3):403-4 - PubMed
  17. BMC Genomics. 2010 Oct 12;11:560 - PubMed
  18. Nature. 2011 Feb 24;470(7335):479-85 - PubMed
  19. J Genet Genomics. 2011 Mar 20;38(3):95-109 - PubMed
  20. Mol Ecol Resour. 2009 Jan;9(1):74-82 - PubMed
  21. Mol Ecol Resour. 2010 May;10(3):475-94 - PubMed
  22. Mol Ecol Resour. 2010 Nov;10(6):1038-47 - PubMed
  23. Mol Ecol Resour. 2011 Jul;11(4):638-44 - PubMed
  24. Science. 2011 Jul 22;333(6041):418-22 - PubMed
  25. Mol Ecol Resour. 2012 May;12(3):532-48 - PubMed
  26. Mol Ecol Resour. 2012 Jul;12(4):740-52 - PubMed
  27. Nature. 2012 Jun 06;486(7401):59-67 - PubMed
  28. Int J Mol Sci. 2012;13(5):5598-606 - PubMed
  29. Bioinformatics. 2012 Oct 1;28(19):2537-9 - PubMed
  30. Coral Reefs. 2009 Sep;28(3):727-733 - PubMed
  31. PLoS Biol. 2012;10(9):e1001388 - PubMed
  32. Mol Ecol. 2013 Jan;22(1):201-14 - PubMed
  33. Ecol Evol. 2013 Jun;3(6):1765-79 - PubMed
  34. Mol Biol Evol. 2013 Dec;30(12):2725-9 - PubMed
  35. Proc Natl Acad Sci U S A. 2014 Jan 14;111(2):569 - PubMed
  36. BMC Res Notes. 2014 Jun 10;7:352 - PubMed
  37. Nature. 2014 Nov 13;515(7526):261-3 - PubMed
  38. BMC Genomics. 2014 Oct 27;15:939 - PubMed
  39. Mol Ecol. 2015 Jan;24(1):70-82 - PubMed
  40. Mol Ecol Resour. 2015 Sep;15(5):1046-58 - PubMed
  41. Mol Ecol. 2015 Nov;24(21):5379-93 - PubMed
  42. Ecol Evol. 2015 Sep 09;5(19):4233-45 - PubMed
  43. Mol Ecol. 2016 Mar;25(6):1398-415 - PubMed
  44. Mol Ecol. 2016 May;25(10):2195-209 - PubMed
  45. Mol Ecol. 2016 Jul;25(13):3065-80 - PubMed
  46. Ecol Evol. 2016 Feb 03;6(5):1457-69 - PubMed
  47. PeerJ. 2016 May 17;4:e2041 - PubMed
  48. Evolution. 1984 Nov;38(6):1358-1370 - PubMed
  49. Heredity (Edinb). 1993 Nov;71 ( Pt 5):488-96 - PubMed
  50. Nucleic Acids Res. 1993 Mar 11;21(5):1111-5 - PubMed
  51. Mol Ecol. 1995 Aug;4(4):519-20 - PubMed
  52. Genome Res. 1997 May;7(5):471-82 - PubMed

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