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Filho JAF, de Brito LS, Leão AP, et al. In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms. Bioinform Biol Insights. 2017;11:1177932217702388doi: 10.1177/1177932217702388.
Filho, J. A. F., de Brito, L. S., Leão, A. P., Alves, A. A., Formighieri, E. F., & Júnior, M. T. S. (2017). In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms. Bioinformatics and biology insights, 111177932217702388. https://doi.org/10.1177/1177932217702388
Filho, Jaire Alves Ferreira, et al. "In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms." Bioinformatics and biology insights vol. 11 (2017): 1177932217702388. doi: https://doi.org/10.1177/1177932217702388
Filho JAF, de Brito LS, Leão AP, Alves AA, Formighieri EF, Júnior MTS. In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms. Bioinform Biol Insights. 2017 Apr 18;11:1177932217702388. doi: 10.1177/1177932217702388. eCollection 2017. PMID: 28469420; PMCID: PMC5402704.
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Bioinform Biol Insights. 2017 Apr 18;11:1177932217702388. doi: 10.1177/1177932217702388. eCollection 2017.

In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms.

Bioinformatics and biology insights

Jaire Alves Ferreira Filho, Lucas Soares de Brito, André Pereira Leão, Alexandre Alonso Alves, Eduardo Fernandes Formighieri, Manoel Teixeira Souza Júnior

Affiliations

  1. Graduate Program in Plant Biotechnology, Federal University of Lavras (UFLA), Lavras, Brazil.
  2. Embrapa Agroenergia, Parque Estação Biológica (PqEB), Brasília, Brazil.
  3. Center of Molecular Biology and Genetic Engineering (CBMEG), University of Campinas (UNICAMP), Campinas, Brazil.

PMID: 28469420 PMCID: PMC5402704 DOI: 10.1177/1177932217702388

Abstract

Transposable elements (TEs) are mobile genetic elements present in almost all eukaryotic genomes. Due to their typical patterns of repetition, discovery, and characterization, they demand analysis by various bioinformatics software. Probably, as a result of the need for a complex analysis, many genomes publicly available do not have these elements annotated yet. In this study, a de novo and homology-based identification of TEs and microsatellites was performed using genomic data from 3 palm species:

Keywords: Elaeis guineensis; Elaeis oleifera; Phoenix dactylifera; bioinformatics; transposable elements

Conflict of interest statement

DECLARATION OF CONFLICTING INTERESTS: The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.

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