Display options
Cite
Focht D, Croll TI, Pedersen BP, et al. Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases. Front Physiol. 2017;8:202doi: 10.3389/fphys.2017.00202.
Focht, D., Croll, T. I., Pedersen, B. P., & Nissen, P. (2017). Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases. Frontiers in physiology, 8202. https://doi.org/10.3389/fphys.2017.00202
Focht, Dorota, et al. "Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases." Frontiers in physiology vol. 8 (2017): 202. doi: https://doi.org/10.3389/fphys.2017.00202
Focht D, Croll TI, Pedersen BP, Nissen P. Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases. Front Physiol. 2017 Apr 11;8:202. doi: 10.3389/fphys.2017.00202. eCollection 2017. PMID: 28443028; PMCID: PMC5387105.
Copy Download .nbib Format: NLM
Share it on

Front Physiol. 2017 Apr 11;8:202. doi: 10.3389/fphys.2017.00202. eCollection 2017.

Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases.

Frontiers in physiology

Dorota Focht, Tristan I Croll, Bjorn P Pedersen, Poul Nissen

Affiliations

  1. Department of Molecular Biology and Genetics, Aarhus UniversityAarhus, Denmark.
  2. DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, Aarhus UniversityAarhus, Denmark.
  3. PUMPkin, Danish National Research Foundation, Aarhus UniversityAarhus, Denmark.
  4. Institute of Health Biomedical Innovation, Queensland University of TechnologyBrisbane, QLD, Australia.
  5. Aarhus Institute of Advanced Studies, Aarhus UniversityAarhus, Denmark.

PMID: 28443028 PMCID: PMC5387105 DOI: 10.3389/fphys.2017.00202

Abstract

The plasma membrane H

Keywords: Arabidopsis thaliana AHA2; P-type ATPases; crystallography; iMDFF; membrane transport; molecular dynamics; plasma membrane proton pump; proton gradient

References

  1. J Chem Inf Model. 2012 Dec 21;52(12):3155-68 - PubMed
  2. J Mol Biol. 2002 Aug 9;321(2):329-39 - PubMed
  3. J Biol Chem. 1989 Sep 25;264(27):16276-81 - PubMed
  4. Nature. 1966 Aug 27;211(5052):969-70 - PubMed
  5. FEBS Lett. 1989 Apr 24;247(2):381-5 - PubMed
  6. Q Rev Biophys. 2010 Nov;43(4):501-66 - PubMed
  7. J Biol Chem. 2010 Mar 5;285(10):7344-50 - PubMed
  8. Nature. 2004 Nov 18;432(7015):361-8 - PubMed
  9. J Biol Chem. 2005 Jun 10;280(23):21785-90 - PubMed
  10. Nature. 2004 Feb 26;427(6977):803-7 - PubMed
  11. Pflugers Arch. 2009 Jan;457(3):573-9 - PubMed
  12. Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21 - PubMed
  13. Science. 1996 May 24;272(5265):1136-44 - PubMed
  14. Science. 1998 Jun 19;280(5371):1934-7 - PubMed
  15. Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8519-24 - PubMed
  16. Nature. 1995 Aug 24;376(6542):660-9 - PubMed
  17. PLoS One. 2014 Jan 20;9(1):e85139 - PubMed
  18. J Biol Chem. 2013 Apr 5;288(14):9610-8 - PubMed
  19. Nature. 2000 Jun 8;405(6787):647-55 - PubMed
  20. Structure. 2016 Mar 1;24(3):469-76 - PubMed
  21. Mol Gen Genet. 1994 Sep 28;244(6):572-87 - PubMed
  22. Nat Struct Mol Biol. 2014 Jan;21(1):43-8 - PubMed
  23. Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1006-16 - PubMed
  24. J Mol Biol. 2009 Apr 17;387(5):1165-85 - PubMed
  25. Biochim Biophys Acta. 2009 Apr;1787(4):207-20 - PubMed
  26. Gastroenterology. 2008 Jun;134(7):1842-60 - PubMed
  27. Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16117-22 - PubMed
  28. Science. 2003 Apr 4;300(5616):108-12 - PubMed
  29. Nature. 2011 Jun 29;475(7354):59-64 - PubMed
  30. J Comput Chem. 2013 Sep 30;34(25):2135-45 - PubMed
  31. Nucleic Acids Res. 2004 Mar 19;32(5):1792-7 - PubMed
  32. EMBO J. 2006 Jun 7;25(11):2305-14 - PubMed
  33. J Comput Chem. 2005 Dec;26(16):1781-802 - PubMed
  34. FEBS Lett. 1993 Feb 15;317(3):216-22 - PubMed
  35. Science. 2016 Mar 25;351(6280):1469-73 - PubMed
  36. Nature. 2007 Dec 13;450(7172):1043-9 - PubMed
  37. Plant Physiol. 1990 Oct;94(2):397-400 - PubMed
  38. J Chem Inf Model. 2012 Dec 21;52(12):3144-54 - PubMed
  39. J Biol Chem. 2010 Dec 17;285(51):39811-8 - PubMed
  40. J Biol Chem. 2003 May 16;278(20):17845-51 - PubMed
  41. Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21 - PubMed
  42. Science. 2004 Jun 11;304(5677):1672-5 - PubMed
  43. J Biol Chem. 2010 Jun 4;285(23):17918-29 - PubMed
  44. J Mol Graph. 1996 Feb;14(1):33-8, 27-8 - PubMed
  45. Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21400-5 - PubMed
  46. J Cell Sci. 2011 Aug 1;124(Pt 15):2515-9 - PubMed
  47. J Mol Evol. 1998 Jan;46(1):84-101 - PubMed
  48. J Membr Biol. 1987;98(2):169-89 - PubMed
  49. J Biol Chem. 2009 May 15;284(20):13513-8 - PubMed
  50. Nature. 2014 Oct 23;514(7523):518-22 - PubMed
  51. FEBS Lett. 2001 Apr 6;494(1-2):6-10 - PubMed
  52. Nature. 2007 Dec 13;450(7172):1036-42 - PubMed
  53. Biochim Biophys Acta. 2002 Oct 11;1565(2):232-45 - PubMed
  54. J Histochem Cytochem. 1965 Feb;13:105-12 - PubMed
  55. Nature. 2007 Dec 13;450(7172):1111-4 - PubMed
  56. Science. 1997 Sep 12;277(5332):1676-81 - PubMed
  57. J Bioenerg Biomembr. 2007 Dec;39(5-6):357-66 - PubMed
  58. J Struct Biol. 2011 May;174(2):296-306 - PubMed
  59. Proc Natl Acad Sci U S A. 1963 Sep;50:474-81 - PubMed
  60. J Biol Chem. 2000 Dec 15;275(50):39167-73 - PubMed
  61. Nature. 1986 Feb 20-26;319(6055):689-93 - PubMed
  62. Nature. 2013 Mar 14;495(7440):260-4 - PubMed
  63. Nature. 2013 Mar 14;495(7440):265-9 - PubMed

Publication Types