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Wampach L, Heintz-Buschart A, Hogan A, et al. Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life. Front Microbiol. 2017;8:738doi: 10.3389/fmicb.2017.00738.
Wampach, L., Heintz-Buschart, A., Hogan, A., Muller, E. E. L., Narayanasamy, S., Laczny, C. C., Hugerth, L. W., Bindl, L., Bottu, J., Andersson, A. F., de Beaufort, C., & Wilmes, P. (2017). Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life. Frontiers in microbiology, 8738. https://doi.org/10.3389/fmicb.2017.00738
Wampach, Linda, et al. "Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life." Frontiers in microbiology vol. 8 (2017): 738. doi: https://doi.org/10.3389/fmicb.2017.00738
Wampach L, Heintz-Buschart A, Hogan A, Muller EEL, Narayanasamy S, Laczny CC, Hugerth LW, Bindl L, Bottu J, Andersson AF, de Beaufort C, Wilmes P. Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life. Front Microbiol. 2017 May 02;8:738. doi: 10.3389/fmicb.2017.00738. eCollection 2017. PMID: 28512451; PMCID: PMC5411419.
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Front Microbiol. 2017 May 02;8:738. doi: 10.3389/fmicb.2017.00738. eCollection 2017.

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.

Frontiers in microbiology

Linda Wampach, Anna Heintz-Buschart, Angela Hogan, Emilie E L Muller, Shaman Narayanasamy, Cedric C Laczny, Luisa W Hugerth, Lutz Bindl, Jean Bottu, Anders F Andersson, Carine de Beaufort, Paul Wilmes

Affiliations

  1. Luxembourg Centre for Systems Biomedicine, University of LuxembourgEsch-sur-Alzette, Luxembourg.
  2. Integrated BioBank of LuxembourgLuxembourg, Luxembourg.
  3. Science for Life Laboratory, Division of Gene Technology, School of Biotechnology, Royal Institute of TechnologyStockholm, Sweden.
  4. Centre Hospitalier de LuxembourgLuxembourg, Luxembourg.

PMID: 28512451 PMCID: PMC5411419 DOI: 10.3389/fmicb.2017.00738

Abstract

Perturbations to the colonization process of the human gastrointestinal tract have been suggested to result in adverse health effects later in life. Although much research has been performed on bacterial colonization and succession, much less is known about the other two domains of life, archaea, and eukaryotes. Here we describe colonization and succession by bacteria, archaea and microeukaryotes during the first year of life (samples collected around days 1, 3, 5, 28, 150, and 365) within the gastrointestinal tract of infants delivered either vaginally or by cesarean section and using a combination of quantitative real-time PCR as well as 16S and 18S rRNA gene amplicon sequencing. Sequences from organisms belonging to all three domains of life were detectable in all of the collected meconium samples. The microeukaryotic community composition fluctuated strongly over time and early diversification was delayed in infants receiving formula milk. Cesarean section-delivered (CSD) infants experienced a delay in colonization and succession, which was observed for all three domains of life. Shifts in prokaryotic succession in CSD infants compared to vaginally delivered (VD) infants were apparent as early as days 3 and 5, which were characterized by increased relative abundances of the genera

Keywords: amplicon sequencing; delivery mode; fungi; infant gut microbiome; microbial colonization; quantitative real-time PCR; succession

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