Display options
Share it on

Front Microbiol. 2017 Sep 06;8:1689. doi: 10.3389/fmicb.2017.01689. eCollection 2017.

Identification, Characterization and Full-Length Sequence Analysis of a Novel Polerovirus Associated with Wheat Leaf Yellowing Disease.

Frontiers in microbiology

Peipei Zhang, Yan Liu, Wenwen Liu, Mengji Cao, Sebastien Massart, Xifeng Wang

Affiliations

  1. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural SciencesBeijing, China.
  2. Laboratory of Phytopathology, University of Liège, Gembloux Agro-Bio TechGembloux, Belgium.
  3. National Citrus Engineering Research Center, Citrus Research Institute, Southwest UniversityChongqing, China.

PMID: 28932215 PMCID: PMC5592212 DOI: 10.3389/fmicb.2017.01689

Abstract

To identify the pathogens responsible for leaf yellowing symptoms on wheat samples collected from Jinan, China, we tested for the presence of three known barley/wheat yellow dwarf viruses (BYDV-GAV, -PAV, WYDV-GPV) (most likely pathogens) using RT-PCR. A sample that tested negative for the three viruses was selected for small RNA sequencing. Twenty-five million sequences were generated, among which 5% were of viral origin. A novel polerovirus was discovered and temporarily named wheat leaf yellowing-associated virus (WLYaV). The full genome of WLYaV corresponds to 5,772 nucleotides (nt), with six AUG-initiated open reading frames, one non-AUG-initiated open reading frame, and three untranslated regions, showing typical features of the family

Keywords: Luteoviridae; Polerovirus; deep sequencing; infectious cDNA clone; leaf yellowing; wheat

References

  1. Science. 1999 Oct 29;286(5441):950-2 - PubMed
  2. Virology. 2000 Mar 30;269(1):156-71 - PubMed
  3. J Gen Virol. 2000 Jul;81(Pt 7):1865-9 - PubMed
  4. Trends Genet. 2001 Aug;17(8):449-59 - PubMed
  5. J Virol. 2002 Jul;76(13):6815-24 - PubMed
  6. J Gen Virol. 2002 Jul;83(Pt 7):1791-8 - PubMed
  7. J Mol Biol. 2002 Sep 20;322(3):621-33 - PubMed
  8. Proc Natl Acad Sci U S A. 2003 Jul 22;100(15):8939-44 - PubMed
  9. Annu Rev Phytopathol. 1997;35:167-90 - PubMed
  10. BMC Bioinformatics. 2004 May 14;5:59 - PubMed
  11. Nature. 2004 Sep 16;431(7006):356-63 - PubMed
  12. Sci China C Life Sci. 2004 Apr;47(2):175-82 - PubMed
  13. EMBO J. 1992 Mar;11(3):1111-7 - PubMed
  14. Proc Natl Acad Sci U S A. 2006 Feb 7;103(6):1994-9 - PubMed
  15. Arch Virol. 2007;152(7):1365-73 - PubMed
  16. J Virol Methods. 2007 Oct;145(1):22-9 - PubMed
  17. Genome Res. 2008 May;18(5):821-9 - PubMed
  18. Trends Plant Sci. 2008 Jul;13(7):375-82 - PubMed
  19. Virus Res. 2008 Sep;136(1-2):140-5 - PubMed
  20. Phytopathology. 2001 Aug;91(8):792-6 - PubMed
  21. Virology. 2009 May 25;388(1):1-7 - PubMed
  22. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W33-9 - PubMed
  23. Arch Virol. 2009;154(7):1125-8 - PubMed
  24. Virology. 2009 Sep 30;392(2):203-14 - PubMed
  25. J Gen Virol. 2010 Apr;91(Pt 4):1082-91 - PubMed
  26. Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1606-11 - PubMed
  27. Cell Host Microbe. 2010 Feb 18;7(2):87-9 - PubMed
  28. Mol Plant Pathol. 2002 Jul 1;3(4):177-83 - PubMed
  29. J Virol Methods. 2010 Oct;169(1):211-4 - PubMed
  30. Virus Genes. 2010 Dec;41(3):425-31 - PubMed
  31. PLoS One. 2011 Feb 04;6(2):e16896 - PubMed
  32. BMC Mol Biol. 2011 Aug 24;12:40 - PubMed
  33. Mol Plant Microbe Interact. 2011 Oct;24(10):1119-31 - PubMed
  34. PLoS One. 2011;6(9):e24758 - PubMed
  35. Nat Methods. 2012 Mar 04;9(4):357-9 - PubMed
  36. PLoS One. 2012;7(5):e37127 - PubMed
  37. Virology. 2013 Apr 10;438(2):61-9 - PubMed
  38. Phytopathology. 2013 Oct;103(10):1077-86 - PubMed
  39. Front Microbiol. 2013 Jul 23;4:205 - PubMed
  40. PLoS One. 2013 Jul 30;8(7):e70722 - PubMed
  41. Mol Biol Evol. 2013 Dec;30(12):2725-9 - PubMed
  42. Virus Res. 2014 Aug 8;188:90-6 - PubMed
  43. Virus Res. 2014 Sep 22;190:25-33 - PubMed
  44. PLoS Pathog. 2014 Dec 11;10(12):e1004553 - PubMed
  45. Virus Res. 2015 Aug 3;206:37-45 - PubMed
  46. PLoS Pathog. 2015 May 06;11(5):e1004868 - PubMed
  47. Annu Rev Phytopathol. 2015;53:425-44 - PubMed
  48. Phytopathology. 2015 Jun;105(6):716-27 - PubMed
  49. Virol J. 2015 Oct 05;12:156 - PubMed
  50. PLoS Pathog. 2015 Oct 20;11(10):e1005223 - PubMed
  51. Virusdisease. 2015 Dec;26(4):237-42 - PubMed
  52. J Gen Virol. 2016 Mar;97(3):706-14 - PubMed
  53. Phytopathology. 2016 Feb;106(2):202-10 - PubMed
  54. Viruses. 2016 Apr 28;8(5): - PubMed
  55. Nat Rev Microbiol. 2017 Mar;15(3):161-168 - PubMed
  56. Front Microbiol. 2017 Jan 24;8:45 - PubMed
  57. Virus Res. 2017 Mar 15;232:106-112 - PubMed
  58. Sci Rep. 2017 Mar 27;7:45132 - PubMed
  59. Front Microbiol. 2017 Aug 09;8:1514 - PubMed
  60. J Virol. 2017 Mar 15;91(6): - PubMed
  61. Phytopathology. 1969 Nov;59(11):1580-9 - PubMed
  62. EMBO J. 1995 Feb 15;14(4):650-9 - PubMed
  63. Virology. 1994 Aug 1;202(2):1012-7 - PubMed

Publication Types