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Ivanova C, Ramoni J, Aouam T, et al. Genome sequencing and transcriptome analysis of . Biotechnol Biofuels. 2017;10:209doi: 10.1186/s13068-017-0897-7.
Ivanova, C., Ramoni, J., Aouam, T., Frischmann, A., Seiboth, B., Baker, S. E., Le Crom, S., Lemoine, S., Margeot, A., & Bidard, F. (2017). Genome sequencing and transcriptome analysis of . Biotechnology for biofuels, 10209. https://doi.org/10.1186/s13068-017-0897-7
Ivanova, Christa, et al. "Genome sequencing and transcriptome analysis of ." Biotechnology for biofuels vol. 10 (2017): 209. doi: https://doi.org/10.1186/s13068-017-0897-7
Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F. Genome sequencing and transcriptome analysis of . Biotechnol Biofuels. 2017 Sep 07;10:209. doi: 10.1186/s13068-017-0897-7. eCollection 2017. PMID: 28912831; PMCID: PMC5588705.
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Biotechnol Biofuels. 2017 Sep 07;10:209. doi: 10.1186/s13068-017-0897-7. eCollection 2017.

Genome sequencing and transcriptome analysis of .

Biotechnology for biofuels

Christa Ivanova, Jonas Ramoni, Thiziri Aouam, Alexa Frischmann, Bernhard Seiboth, Scott E Baker, Stéphane Le Crom, Sophie Lemoine, Antoine Margeot, Frédérique Bidard

Affiliations

  1. IFP Energies Nouvelles, 1-4 Avenue de Bois-Préau, 92852 Rueil-Malmaison, France.
  2. Present Address: Genetics of Biofilms Unit, Department of Microbiology, Institut Pasteur, 25-28 Rue du Dr Roux, 75015 Paris, France.
  3. Molecular Biotechnology, Research Division Biochemical Technology, Institute of Chemical Engineering, TU-Wien, 1060 Vienna, Austria.
  4. Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354 USA.
  5. Evolution Paris Seine-Institut de Biologie Paris Seine (EPS-IBPS), Sorbonne Universités, UPMC Univ Paris 06, Univ Antilles, Univ Nice Sophia Antipolis, CNRS, 75005 Paris, France.
  6. École normale supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École normale supérieure (IBENS), Plateforme Génomique, 75005 Paris, France.

PMID: 28912831 PMCID: PMC5588705 DOI: 10.1186/s13068-017-0897-7

Abstract

BACKGROUND: The hydrolysis of biomass to simple sugars used for the production of biofuels in biorefineries requires the action of cellulolytic enzyme mixtures. During the last 50 years, the ascomycete

RESULTS: Sequence comparison of the cellulase-negative strain QM9978 to the reference strain QM6a identified a total of 43 mutations, of which 33 were located either close to or in coding regions. From those, we identified 23 single-nucleotide variants, nine InDels, and one translocation. The translocation occurred between chromosomes V and VII, is located upstream of the putative transcription factor

CONCLUSION: We were able to establish a link between a chromosomal translocation in QM9978 and the cellulase-negative phenotype of the strain. We identified the transcription factor

Keywords: Cellulase production; Genome analysis; Promoter; Transcriptome; Translocation; Trichoderma reesei; vib1

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