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Biochem Biophys Rep. 2017 Jul 20;11:138-146. doi: 10.1016/j.bbrep.2017.07.008. eCollection 2017 Sep.

A novel dual luciferase based high throughput assay to monitor autophagy in real time in yeast .

Biochemistry and biophysics reports

Piyush Mishra, Shashank Rai, Ravi Manjithaya

Affiliations

  1. Autophagy Lab, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore, India.

PMID: 28955778 PMCID: PMC5614714 DOI: 10.1016/j.bbrep.2017.07.008

Abstract

BACKGROUND: Macroautophagy is a cellular response to starvation wherein superfluous and damaged cytoplasmic constituents are degraded to provide energy for survival and to maintain cellular homeostasis. Dysfunctional autophagy is attributed to disease progression in several pathological conditions and therefore, autophagy has appeared as a potential pharmacological target for such conditions.

OBJECTIVE: In search of potential drugs that modulate autophagy, identifying small molecule effectors of autophagy is the primary step. The conventional autophagy assays have a limitation that they cannot be scaled down to a high throughput format, therefore, novel sensitive assays are needed to discover new candidate molecules. Keeping this rationale in mind, a dual luciferase based assay was developed in the yeast

METHODS: Firefly and

RESULTS AND CONCLUSION: The assay was more sensitive than conventional assays and could be scaled down to a 384 well format using an automated system. A good Z-factor score indicated that the assay is highly suitable for High Throughput Screening (HTS) of small molecule libraries. Screening of a small molecule library with our assay identified several known and novel modulators of autophagy.

Keywords: Autophagy; High throughput screening; Luciferase; Peroxisome; Pexophagy; Small molecules

References

  1. Annu Rev Nutr. 2007;27:19-40 - PubMed
  2. Nat Rev Mol Cell Biol. 2007 Nov;8(11):931-7 - PubMed
  3. Genes Dev. 2007 Nov 15;21(22):2861-73 - PubMed
  4. Dev Cell. 2008 Mar;14(3):365-76 - PubMed
  5. Cell. 2004 Dec 17;119(6):753-66 - PubMed
  6. Nat Rev Cancer. 2007 Dec;7(12 ):961-7 - PubMed
  7. Science. 2010 Dec 3;330(6009):1344-8 - PubMed
  8. Nat Chem Biol. 2007 Jun;3(6):331-8 - PubMed
  9. Drug Discov Today Technol. 2013 Spring;10(1):e137-44 - PubMed
  10. J Mol Biol. 1997 Oct 31;273(3):714-28 - PubMed
  11. Autophagy. 2009 May;5(4):511-9 - PubMed
  12. Science. 2011 Jul 8;333(6039):228-33 - PubMed
  13. Mol Biol Cell. 2009 Aug;20(16):3680-9 - PubMed
  14. J Cell Biol. 2010 Apr 19;189(2):303-10 - PubMed
  15. Autophagy. 2013 Sep;9(9):1407-17 - PubMed
  16. J Clin Invest. 2003 Dec;112(12 ):1809-20 - PubMed
  17. Autophagy. 2016;12 (1):1-222 - PubMed
  18. Clin Cancer Res. 2009 Sep 1;15(17):5308-16 - PubMed
  19. Autophagy. 2008 Aug;4(6):801-6 - PubMed
  20. Biochim Biophys Acta. 2009 Apr;1793(4):664-73 - PubMed
  21. Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16594-9 - PubMed
  22. Nat Rev Cancer. 2012 Apr 26;12(6):401-10 - PubMed
  23. Science. 2005 Feb 4;307(5710):727-31 - PubMed
  24. Nat Med. 2013 Aug;19(8):983-97 - PubMed
  25. Genes Cells. 2010 Sep 1;15(9):923-33 - PubMed
  26. Cell. 2005 Jan 28;120(2):159-62 - PubMed
  27. Science. 2004 Nov 5;306(5698):990-5 - PubMed
  28. J Cell Sci. 2005 Jan 1;118(Pt 1):7-18 - PubMed
  29. Nature. 1999 Dec 9;402(6762):672-6 - PubMed
  30. Mol Cell. 2015 Jul 16;59(2):285-97 - PubMed
  31. Hum Mol Genet. 2002 May 1;11(9):1107-17 - PubMed
  32. Proc Natl Acad Sci U S A. 2007 Nov 27;104(48):19023-8 - PubMed
  33. Mol Cell. 2016 Nov 17;64(4):835-849 - PubMed
  34. Nat Commun. 2015 Oct 27;6:8620 - PubMed
  35. Autophagy. 2005 Jul;1(2):75-83 - PubMed
  36. Exp Mol Med. 2012 Feb 29;44(2):89-98 - PubMed
  37. Mol Biosyst. 2008 Sep;4(9):895-901 - PubMed

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