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Galili T, O'Callaghan A, Sidi J, et al. heatmaply: an R package for creating interactive cluster heatmaps for online publishing. Bioinformatics. 2018;34(9):1600-1602doi: 10.1093/bioinformatics/btx657.
Galili, T., O'Callaghan, A., Sidi, J., & Sievert, C. (2018). heatmaply: an R package for creating interactive cluster heatmaps for online publishing. Bioinformatics (Oxford, England), 34(9), 1600-1602. https://doi.org/10.1093/bioinformatics/btx657
Galili, Tal, et al. "heatmaply: an R package for creating interactive cluster heatmaps for online publishing." Bioinformatics (Oxford, England) vol. 34,9 (2018): 1600-1602. doi: https://doi.org/10.1093/bioinformatics/btx657
Galili T, O'Callaghan A, Sidi J, Sievert C. heatmaply: an R package for creating interactive cluster heatmaps for online publishing. Bioinformatics. 2018 May 01;34(9):1600-1602. doi: 10.1093/bioinformatics/btx657. PMID: 29069305; PMCID: PMC5925766.
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Bioinformatics. 2018 May 01;34(9):1600-1602. doi: 10.1093/bioinformatics/btx657.

heatmaply: an R package for creating interactive cluster heatmaps for online publishing.

Bioinformatics (Oxford, England)

Tal Galili, Alan O'Callaghan, Jonathan Sidi, Carson Sievert

Affiliations

  1. Department of Statistics and Operations Research, Tel Aviv University, Tel Aviv 6997801, Israel.
  2. Fios Genomics, 9 Edinburgh Bioquarter, EH16 4UX, Scotland, UK.
  3. Department of Statistics, Hebrew University, Jerusalem 9190401, Israel.
  4. Department of Statistics, Iowa State University, 2438 Osborn Dr Ames, IA 50011-1090.

PMID: 29069305 PMCID: PMC5925766 DOI: 10.1093/bioinformatics/btx657

Abstract

SUMMARY: heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data matrix, the side dendrograms, or annotated labels. Thanks to the synergistic relationship between heatmaply and other R packages, the user is empowered by a refined control over the statistical and visual aspects of the heatmap layout.

AVAILABILITY AND IMPLEMENTATION: The heatmaply package is available under the GPL-2 Open Source license. It comes with a detailed vignette, and is freely available from: http://cran.r-project.org/package=heatmaply.

CONTACT: [email protected].

SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

References

  1. N Engl J Med. 2013 Nov 28;369(22):2152-8 - PubMed
  2. Bioinformatics. 2015 Nov 15;31(22):3718-20 - PubMed
  3. Nat Methods. ;9(3):213 - PubMed
  4. Science. 2008 Mar 28;319(5871):1772-3 - PubMed
  5. Bioinformatics. 2016 Sep 15;32(18):2847-9 - PubMed

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