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Ferrer M, Sorokin DY, Wolf YI, et al. Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia". Genes (Basel). 2018;9(2)doi: 10.3390/genes9020028.
Ferrer, M., Sorokin, D. Y., Wolf, Y. I., Ciordia, S., Mena, M. C., Bargiela, R., Koonin, E. V., & Makarova, K. S. (2018). Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia". Genes, 9(2), . https://doi.org/10.3390/genes9020028
Ferrer, Manuel, et al. "Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia"." Genes vol. 9,2 (2018). doi: https://doi.org/10.3390/genes9020028
Ferrer M, Sorokin DY, Wolf YI, Ciordia S, Mena MC, Bargiela R, Koonin EV, Makarova KS. Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia". Genes (Basel). 2018 Jan 23;9(2). doi: 10.3390/genes9020028. PMID: 29360740; PMCID: PMC5852551.
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Genes (Basel). 2018 Jan 23;9(2). doi: 10.3390/genes9020028.

Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia".

Genes

Manuel Ferrer, Dimitry Y Sorokin, Yuri I Wolf, Sergio Ciordia, María C Mena, Rafael Bargiela, Eugene V Koonin, Kira S Makarova

Affiliations

  1. Institute of Catalysis, CSIC, 28049 Madrid, Spain. [email protected].
  2. Winogradsky Institute of Microbiology, Research Centre for Biotechnology, Russian Academy of Sciences, Prospect 60-let Octyabrya 7/2, 117312 Moscow, Russia. [email protected].
  3. Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ Delft, The Netherlands. [email protected].
  4. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. [email protected].
  5. Proteomics Facility, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain. [email protected].
  6. Proteomics Facility, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain. [email protected].
  7. Institute of Catalysis, CSIC, 28049 Madrid, Spain. [email protected].
  8. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. [email protected].
  9. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. [email protected].

PMID: 29360740 PMCID: PMC5852551 DOI: 10.3390/genes9020028

Abstract

The recently discovered Methanonatronarchaeia are extremely halophilic and moderately thermophilic methyl-reducing methanogens representing a novel class-level lineage in the phylum Euryarchaeota related to the class Halobacteria. Here we present a detailed analysis of 1D-nano liquid chromatography-electrospray ionization tandem mass spectrometry data obtained for "Methanonatronarchaeum thermophilum" AMET1 grown in different physiological conditions, including variation of the growth temperature and substrates. Analysis of these data allows us to refine the current understanding of the key biosynthetic pathways of this triple extremophilic methanogenic euryarchaeon and identify proteins that are likely to be involved in its response to growth condition changes.

Keywords: Methanonatronarchaeia; genomics; halophiles; methanogenesis; proteomics

Conflict of interest statement

The authors declare no conflicts of interest.

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