Display options
Share it on

Front Microbiol. 2018 Jan 09;8:2642. doi: 10.3389/fmicb.2017.02642. eCollection 2017.

Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse .

Frontiers in microbiology

Marc D Auffret, Robert Stewart, Richard J Dewhurst, Carol-Anne Duthie, John A Rooke, Robert J Wallace, Tom C Freeman, Timothy J Snelling, Mick Watson, Rainer Roehe

Affiliations

  1. Scotland's Rural College, Future Farming System (FFS), Edinburgh, United Kingdom.
  2. Edinburgh Genomics, The Roslin Institute and R(D)SVS, University of Edinburgh, Edinburgh, United Kingdom.
  3. Rowett Institute of Nutrition and Health, University of Aberdeen, Aberdeen, United Kingdom.
  4. Division of Genetics and Genomics, The Roslin Institute and R(D)SVS, University of Edinburgh, Edinburgh, United Kingdom.

PMID: 29375511 PMCID: PMC5767246 DOI: 10.3389/fmicb.2017.02642

Abstract

Previous shotgun metagenomic analyses of ruminal digesta identified some microbial information that might be useful as biomarkers to select cattle that emit less methane (CH

Keywords: biomarkers; diets; metagenomics; methane; rumen microbiome

References

  1. Br J Nutr. 2012 Feb;107(3):388-97 - PubMed
  2. Animal. 2014 Feb;8(2):250-61 - PubMed
  3. Nat Rev Microbiol. 2008 Aug;6(8):579-91 - PubMed
  4. J Anim Sci. 2013 Dec;91(12):5724-8 - PubMed
  5. Stand Genomic Sci. 2016 Sep 06;11(1):59 - PubMed
  6. Sci Rep. 2017 Mar 24;7(1):422 - PubMed
  7. Environ Technol. 2014 May-Jun;35(9-12):1133-9 - PubMed
  8. Int J Syst Evol Microbiol. 2001 Nov;51(Pt 6):1965-8 - PubMed
  9. Genome Biol Evol. 2013;5(10):1769-80 - PubMed
  10. Animal. 2013 Jun;7 Suppl 2:316-21 - PubMed
  11. J Dairy Sci. 2014;97(6):3231-61 - PubMed
  12. Genet Sel Evol. 2017 Jan 16;49(1):9 - PubMed
  13. Front Microbiol. 2016 Feb 12;7:132 - PubMed
  14. PLoS One. 2017 Jan 4;12(1):e0169563 - PubMed
  15. J Dairy Sci. 2016 Aug;99(8):6191-6205 - PubMed
  16. ISME J. 2016 Dec;10(12):2958-2972 - PubMed
  17. J Anim Sci. 2011 Mar;89(3):783-91 - PubMed
  18. PLoS Comput Biol. 2007 Oct;3(10):2032-42 - PubMed
  19. Mol Microbiol. 2010 Feb;75(4):843-53 - PubMed
  20. J Ind Microbiol Biotechnol. 2016 Jun;43(6):771-81 - PubMed
  21. PLoS One. 2014 Jul 31;9(7):e103171 - PubMed
  22. Sci Rep. 2015 Oct 09;5:14567 - PubMed
  23. PLoS Genet. 2016 Feb 18;12(2):e1005846 - PubMed
  24. J Dairy Sci. 2013 Aug;96(8):5290-4 - PubMed
  25. PLoS One. 2010 Jan 28;5(1):e8926 - PubMed
  26. Nat Microbiol. 2016 Oct 03;1:16170 - PubMed
  27. Sci Rep. 2016 Aug 16;6:31582 - PubMed
  28. J Anim Sci Biotechnol. 2017 Jan 19;8:7 - PubMed
  29. ISME J. 2016 Feb;10(2):400-15 - PubMed
  30. Arch Tierernahr. 1996;49(4):363-70 - PubMed
  31. Appl Environ Microbiol. 2006 Jul;72(7):5069-72 - PubMed
  32. Science. 2011 Jul 29;333(6042):646-8 - PubMed
  33. PLoS One. 2013 Sep 04;8(9):e73056 - PubMed
  34. Genome Res. 2014 Sep;24(9):1517-25 - PubMed
  35. Appl Environ Microbiol. 1994 Jun;60(6):1827-31 - PubMed
  36. Archaea. 2010 Dec 30;2010:945785 - PubMed
  37. BMC Genomics. 2015 Oct 23;16:839 - PubMed
  38. J Anim Sci. 1995 Aug;73(8):2483-92 - PubMed
  39. J Anim Sci. 2017 Jun;95(6):2467-2480 - PubMed
  40. Archaea. 2011;2011:973848 - PubMed
  41. Front Microbiol. 2017 Feb 17;8:226 - PubMed
  42. J Anim Sci Biotechnol. 2017 Jan 19;8:8 - PubMed
  43. Genome Biol. 2014 Mar 03;15(3):R46 - PubMed
  44. Br J Nutr. 2014 Aug 14;112(3):398-407 - PubMed
  45. PLoS One. 2016 Oct 26;11(10):e0161362 - PubMed
  46. Microbiome. 2016 Oct 19;4(1):56 - PubMed
  47. Animal. 2016 Jul;10(7):1173-81 - PubMed
  48. Animal. 2017 Oct;11(10):1762-1771 - PubMed
  49. J Anim Sci. 2015 Jul;93(7):3564-77 - PubMed
  50. Sci Rep. 2014 Jul 31;4:5892 - PubMed
  51. PLoS One. 2010 Aug 03;5(8):e11942 - PubMed
  52. Front Microbiol. 2012 Mar 06;3:81 - PubMed
  53. Nat Commun. 2013;4:1428 - PubMed
  54. Animal. 2016 May;10(5):786-95 - PubMed
  55. J Dairy Sci. 2017 Apr;100(4):2433-2453 - PubMed
  56. PLoS One. 2015 Oct 28;10(10):e0140282 - PubMed
  57. Vet Res Commun. 1981 Dec;5(2):101-15 - PubMed

Publication Types

Grant support