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Front Genet. 2018 Oct 03;9:385. doi: 10.3389/fgene.2018.00385. eCollection 2018.

Combining Landscape Genomics and Ecological Modelling to Investigate Local Adaptation of Indigenous Ugandan Cattle to East Coast Fever.

Frontiers in genetics

Elia Vajana, Mario Barbato, Licia Colli, Marco Milanesi, Estelle Rochat, Enrico Fabrizi, Christopher Mukasa, Marcello Del Corvo, Charles Masembe, Vincent B Muwanika, Fredrick Kabi, Tad Stewart Sonstegard, Heather Jay Huson, Riccardo Negrini, Stéphane Joost, Paolo Ajmone-Marsan

Affiliations

  1. Department of Animal Science, Food and Nutrition (DIANA), Biodiversity and Ancient DNA Research Centre (BioDNA), and Proteomics and Nutrigenomics Research Centre (PRONUTRIGEN), Università Cattolica del Sacro Cuore, Piacenza, Italy.
  2. Laboratory of Geographic Information Systems (LASIG), School of Architecture, Civil and Environmental Engineering (ENAC), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
  3. Department of Support, Production and Animal Health, School of Veterinary Medicine, São Paulo State University, Araçatuba, Brazil.
  4. International Atomic Energy Agency (IAEA), Collaborating Centre on Animal Genomics and Bioinformatics, Araçatuba, Brazil.
  5. Department of Economics and Social Sciences, Università Cattolica del Sacro Cuore, Piacenza, Italy.
  6. National Animal Genetic Resource Centre and Data Bank, Entebbe, Uganda.
  7. Department of Zoology, Entomology and Fisheries, Makerere University, Kampala, Uganda.
  8. Department of Environmental Management, Makerere University, Kampala, Uganda.
  9. National Livestock Resources Research Institute (NaLIRRI), National Agricultural Research Organisation, Tororo, Uganda.
  10. Recombinetics, Inc., St. Paul, MN, United States.
  11. Department of Animal Science, Cornell University, Ithaca, NY, United States.
  12. Associazione Italiana Allevatori (AIA), Rome, Italy.

PMID: 30333851 PMCID: PMC6177531 DOI: 10.3389/fgene.2018.00385

Abstract

East Coast fever (ECF) is a fatal sickness affecting cattle populations of eastern, central, and southern Africa. The disease is transmitted by the tick

Keywords: East Coast fever; indigenous cattle; landscape genomics; local adaptation; species distribution modelling

References

  1. Ticks Tick Borne Dis. 2016 Apr;7(3):487-97 - PubMed
  2. Front Genet. 2015 Mar 20;6:109 - PubMed
  3. Database (Oxford). 2016 Jun 23;2016: - PubMed
  4. PLoS Pathog. 2010 Nov 18;6(11):e1001197 - PubMed
  5. PLoS One. 2012;7(9):e45498 - PubMed
  6. Onderstepoort J Vet Res. 2004 Sep;71(3):189-95 - PubMed
  7. Nat Rev Genet. 2013 Nov;14(11):807-20 - PubMed
  8. J Biol Chem. 1997 May 2;272(18):11943-51 - PubMed
  9. J Anim Sci. 2014 Apr;92(4):1462-72 - PubMed
  10. Int J Mol Sci. 2016 Aug 31;17(9): - PubMed
  11. Parasit Vectors. 2014 Sep 01;7:414 - PubMed
  12. Biochemistry. 1989 May 2;28(9):4027-35 - PubMed
  13. Science. 2007 Nov 2;318(5851):812-4 - PubMed
  14. Mol Ecol. 2015 Sep;24(17):4348-70 - PubMed
  15. Vet Parasitol. 2002 Jul 29;107(1-2):51-63 - PubMed
  16. Ecology. 2008 May;89(5):1457-68 - PubMed
  17. Eur J Cell Biol. 1998 Feb;75(2):174-83 - PubMed
  18. Parasitology. 1981 Aug;83(Pt 1):199-211 - PubMed
  19. Mol Biol Rep. 2016 Aug;43(8):827-36 - PubMed
  20. Trop Anim Health Prod. 2017 Apr;49(4):813-822 - PubMed
  21. Cell Mol Life Sci. 2015 Jul;72(13):2535-44 - PubMed
  22. Nucleic Acids Res. 1999 Jan 1;27(1):161-4 - PubMed
  23. Trop Anim Health Prod. 2011 Jan;43(1):271-7 - PubMed
  24. Ticks Tick Borne Dis. 2016 Jun;7(4):549-64 - PubMed
  25. J Exp Med. 2001 Nov 5;194(9):1263-76 - PubMed
  26. Mol Biol Res Commun. 2015 Jun;4(2):93-103 - PubMed
  27. Cell. 1996 Jun 28;85(7):1077-88 - PubMed
  28. Mol Reprod Dev. 2009 Jan;76(1):38-47 - PubMed
  29. Sci Rep. 2016 Mar 23;6:23161 - PubMed
  30. Genetics. 2006 Jul;173(3):1503-10 - PubMed
  31. Vet Immunol Immunopathol. 2007 Nov 15;120(1-2):20-30 - PubMed
  32. Ecology. 2015 Sep;96(9):2370-82 - PubMed
  33. PLoS One. 2014 May 29;9(5):e96084 - PubMed
  34. Biochem Biophys Res Commun. 2000 Sep 16;276(1):264-70 - PubMed
  35. Asian-Australas J Anim Sci. 2015 Jul;28(7):911-21 - PubMed
  36. Genet Sel Evol. 2004 Nov-Dec;36(6):673-90 - PubMed
  37. Nat Genet. 2015 Oct;47(10):1141-8 - PubMed
  38. Parasit Vectors. 2016 Jan 04;9:4 - PubMed
  39. Curr Opin Immunol. 2004 Aug;16(4):524-30 - PubMed
  40. Front Genet. 2017 Jun 08;8:68 - PubMed
  41. Parasite Immunol. 2014 Nov;36(11):553-9 - PubMed
  42. Science. 2002 Apr 12;296(5566):336-9 - PubMed
  43. Exp Appl Acarol. 2011 Oct;55(2):203-13 - PubMed
  44. Biochem Biophys Res Commun. 2004 Jun 25;319(2):298-303 - PubMed
  45. Vet Parasitol. 1996 May;63(1-2):95-108 - PubMed
  46. Physiol Genomics. 2015 Apr;47(4):129-37 - PubMed
  47. Am J Hum Genet. 2007 Sep;81(3):626-33 - PubMed
  48. Genomics. 1993 Sep;17(3):699-725 - PubMed
  49. Bioinformatics. 2009 Jun 15;25(12):i213-21 - PubMed
  50. Best Pract Res Clin Anaesthesiol. 2004 Sep;18(3):385-405 - PubMed
  51. Parasitol Today. 1997 Oct;13(10):383-9 - PubMed
  52. Genome Biol. 2017 Feb 20;18(1):34 - PubMed
  53. Prev Vet Med. 2006 Aug 17;75(3-4):251-66 - PubMed
  54. J Mol Evol. 2008 Dec;67(6):594-607 - PubMed
  55. DNA Res. 2013 Jun;20(3):209-20 - PubMed
  56. Mol Ecol. 2007 Sep;16(18):3955-69 - PubMed
  57. Infect Immun. 1988 Feb;56(2):462-7 - PubMed
  58. Parasit Vectors. 2012 Sep 07;5:194 - PubMed
  59. Ecology. 2014 Mar;95(3):631-6 - PubMed
  60. Mediators Inflamm. 2015;2015:952536 - PubMed
  61. Adv Parasitol. 1999;44:41-97 - PubMed
  62. Parasit Vectors. 2014 Mar 03;7:91 - PubMed
  63. Mol Cell Biol. 2002 Oct;22(19):6663-8 - PubMed
  64. Mol Ecol Resour. 2017 Sep;17(5):1072-1089 - PubMed
  65. Heredity (Edinb). 2011 Mar;106(3):404-20 - PubMed
  66. Infect Genet Evol. 2014 Oct;27:250-63 - PubMed
  67. Am J Hum Genet. 2007 Sep;81(3):559-75 - PubMed
  68. PLoS Biol. 2010 Aug 10;8(8):e1000451 - PubMed
  69. Circ Res. 2007 Nov 26;101(11):1078-80 - PubMed
  70. Med Vet Entomol. 1997 Jul;11(3):270-6 - PubMed
  71. Vet Parasitol. 1998 May;77(1):63-70 - PubMed
  72. Genet Sel Evol. 2015 Jun 23;47:52 - PubMed
  73. Hum Biol. 2012 Aug;84(4):343-64 - PubMed
  74. PLoS Med. 2008 Jan 29;5(1):e27 - PubMed
  75. PLoS One. 2014 Nov 24;9(11):e113284 - PubMed
  76. G3 (Bethesda). 2011 Jun;1(1):65-74 - PubMed
  77. Sci Rep. 2017 Aug 8;7(1):7623 - PubMed
  78. Genome Res. 2009 Sep;19(9):1655-64 - PubMed
  79. Reproduction. 2012 Jun;143(6):735-47 - PubMed
  80. Mol Cell Biol. 1995 Mar;15(3):1137-43 - PubMed
  81. Rev Sci Tech. 1990 Jun;9(2):405-21 - PubMed
  82. Acta Trop. 2000 May 31;75(3):263-77 - PubMed
  83. Mamm Genome. 2004 Apr;15(4):323-33 - PubMed
  84. Vet Parasitol. 2008 Aug 17;155(3-4):273-80 - PubMed
  85. Vet Parasitol. 2011 Feb 10;175(3-4):212-9 - PubMed
  86. Cytogenet Genome Res. 2008;120(1-2):150-6 - PubMed
  87. Psychol Methods. 2006 Mar;11(1):54-71 - PubMed
  88. Rev Sci Tech. 2015 Apr;34(1):185-97 - PubMed
  89. J Membr Biol. 2005 Jan;203(1):21-30 - PubMed
  90. Trop Anim Health Prod. 1993 May;25(2):75-8 - PubMed
  91. PLoS One. 2012;7(5):e36527 - PubMed
  92. PLoS Genet. 2014 Mar 27;10(3):e1004254 - PubMed

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