Display options
Cite
Brites D, Loiseau C, Menardo F, et al. A New Phylogenetic Framework for the Animal-Adapted . Front Microbiol. 2018;9:2820doi: 10.3389/fmicb.2018.02820.
Brites, D., Loiseau, C., Menardo, F., Borrell, S., Boniotti, M. B., Warren, R., Dippenaar, A., Parsons, S. D. C., Beisel, C., Behr, M. A., Fyfe, J. A., Coscolla, M., & Gagneux, S. (2018). A New Phylogenetic Framework for the Animal-Adapted . Frontiers in microbiology, 92820. https://doi.org/10.3389/fmicb.2018.02820
Brites, Daniela, et al. "A New Phylogenetic Framework for the Animal-Adapted ." Frontiers in microbiology vol. 9 (2018): 2820. doi: https://doi.org/10.3389/fmicb.2018.02820
Brites D, Loiseau C, Menardo F, Borrell S, Boniotti MB, Warren R, Dippenaar A, Parsons SDC, Beisel C, Behr MA, Fyfe JA, Coscolla M, Gagneux S. A New Phylogenetic Framework for the Animal-Adapted . Front Microbiol. 2018 Nov 27;9:2820. doi: 10.3389/fmicb.2018.02820. eCollection 2018. PMID: 30538680; PMCID: PMC6277475.
Copy Download .nbib Format: NLM
Share it on

Front Microbiol. 2018 Nov 27;9:2820. doi: 10.3389/fmicb.2018.02820. eCollection 2018.

A New Phylogenetic Framework for the Animal-Adapted .

Frontiers in microbiology

Daniela Brites, Chloé Loiseau, Fabrizio Menardo, Sonia Borrell, Maria Beatrice Boniotti, Robin Warren, Anzaan Dippenaar, Sven David Charles Parsons, Christian Beisel, Marcel A Behr, Janet A Fyfe, Mireia Coscolla, Sebastien Gagneux

Affiliations

  1. Swiss Tropical and Public Health Institute, Basel, Switzerland.
  2. University of Basel, Basel, Switzerland.
  3. Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia-Romagna: Centro Nazionale di Referenza per la Tubercolosi Bovina, Brescia, Italy.
  4. SAMRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Stellenbosch, South Africa.
  5. Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
  6. McGill International TB Centre, Infectious Diseases and Immunity in Global Health, McGill University Health Centre and Research Institute, Montréal, QC, Canada.
  7. Mycobacterium Reference Laboratory, Victoria Infectious Diseases Reference Laboratory, Peter Doherty Institute, Melbourne, VIC, Australia.
  8. Institute for Integrative Systems Biology (I2SysBio), University of Valencia-CSIC, Valencia, Spain.

PMID: 30538680 PMCID: PMC6277475 DOI: 10.3389/fmicb.2018.02820

Abstract

Tuberculosis (TB) affects humans and other animals and is caused by bacteria from the

Keywords: genetic diversity; host range; host–pathogen interactions; specificity; whole-genome sequencing

References

  1. Bioinformatics. 2006 Nov 1;22(21):2688-90 - PubMed
  2. Proc Natl Acad Sci U S A. 1994 Mar 29;91(7):2757-61 - PubMed
  3. J Wildl Dis. 2012 Oct;48(4):849-57 - PubMed
  4. PLoS Genet. 2013;9(3):e1003318 - PubMed
  5. Trends Ecol Evol. 2005 May;20(5):238-44 - PubMed
  6. Bioinformatics. 2008 Jun 1;24(11):1403-5 - PubMed
  7. Microbiology. 2004 May;150(Pt 5):1519-27 - PubMed
  8. Nat Genet. 2013 Oct;45(10):1176-82 - PubMed
  9. Transbound Emerg Dis. 2018 Dec;65(6):1627-1640 - PubMed
  10. Emerg Infect Dis. 2010 Aug;16(8):1296-9 - PubMed
  11. Nat Genet. 2010 Jun;42(6):498-503 - PubMed
  12. Emerg Infect Dis. 2013 Dec;19(12):2004-7 - PubMed
  13. Infect Immun. 2002 Oct;70(10):5568-78 - PubMed
  14. PLoS Negl Trop Dis. 2010 Sep 28;4(9):e744 - PubMed
  15. J Bacteriol. 2004 Jan;186(1):104-9 - PubMed
  16. Emerg Infect Dis. 2013 Jun;19(6):899-908 - PubMed
  17. Methods Mol Biol. 1998;101:31-44 - PubMed
  18. J Bacteriol. 2009 Mar;191(6):1951-60 - PubMed
  19. Adv Exp Med Biol. 2017;1019:1-26 - PubMed
  20. Bioinformatics. 2011 Nov 1;27(21):2987-93 - PubMed
  21. Immunol Rev. 2015 Mar;264(1):6-24 - PubMed
  22. J Clin Microbiol. 1997 Jun;35(6):1390-3 - PubMed
  23. Vet Microbiol. 1994 Nov;42(2-3):135-45 - PubMed
  24. Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2869-73 - PubMed
  25. Vaccine. 2012 Mar 30;30(16):2611-22 - PubMed
  26. Nature. 2014 Oct 23;514(7523):494-7 - PubMed
  27. Tuberculosis (Edinb). 2013 Nov;93(6):589-95 - PubMed
  28. Mol Microbiol. 2002 Nov;46(3):709-17 - PubMed
  29. Epidemics. 2016 Mar;14:26-35 - PubMed
  30. Biol Rev Camb Philos Soc. 2007 Nov;82(4):591-605 - PubMed
  31. Tuberculosis (Edinb). 2015 Dec;95(6):682-688 - PubMed
  32. Genome Res. 2012 Mar;22(3):568-76 - PubMed
  33. PLoS Pathog. 2018 Jun 18;14(6):e1007139 - PubMed
  34. J Theor Biol. 2006 Mar 21;239(2):220-5 - PubMed
  35. Emerg Infect Dis. 2013 Jun;19(6):969-76 - PubMed
  36. Int J Syst Evol Microbiol. 2018 Jan;68(1):324-332 - PubMed
  37. Bioinformatics. 2014 Aug 1;30(15):2114-20 - PubMed
  38. Lancet Infect Dis. 2007 May;7(5):328-37 - PubMed
  39. PLoS One. 2010 Jan 01;5(1):e8527 - PubMed
  40. J Bacteriol. 2005 Sep;187(18):6386-95 - PubMed
  41. Emerg Infect Dis. 2017 Oct;23(10):1749-1751 - PubMed
  42. J Clin Microbiol. 1998 Jul;36(7):1840-5 - PubMed
  43. Adv Exp Med Biol. 2017;1019:135-154 - PubMed
  44. Transbound Emerg Dis. 2017 Dec;64(6):1965-1969 - PubMed
  45. Nat Genet. 2013 Feb;45(2):172-9 - PubMed
  46. Bioinformatics. 2010 Mar 1;26(5):589-95 - PubMed
  47. J S Afr Vet Assoc. 2016 Apr 26;87(1):1322 - PubMed
  48. Tuberculosis (Edinb). 2001;81(1-2):43-9 - PubMed
  49. PLoS Negl Trop Dis. 2012;6(2):e1552 - PubMed
  50. Nat Rev Microbiol. 2006 Sep;4(9):670-81 - PubMed
  51. Vet Pathol. 2014 Sep;51(5):903-14 - PubMed
  52. Emerg Infect Dis. 2011 Mar;17(3):366-71 - PubMed
  53. Adv Exp Med Biol. 2017;1019:117-133 - PubMed
  54. Genome Announc. 2017 Apr 6;5(14): - PubMed
  55. Nat Rev Microbiol. 2009 Jul;7(7):537-44 - PubMed
  56. BMC Bioinformatics. 2018 May 2;19(1):164 - PubMed
  57. Emerg Infect Dis. 2012 Apr;18(4):653-5 - PubMed
  58. J Infect Dis. 2003 Jan 1;187(1):117-23 - PubMed
  59. Front Microbiol. 2017 Dec 05;8:2389 - PubMed
  60. Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11491-6 - PubMed
  61. Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3684-9 - PubMed
  62. BMC Genomics. 2014 Oct 09;15:881 - PubMed
  63. Vet J. 2012 Nov;194(2):166-72 - PubMed
  64. Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1305-14 - PubMed
  65. Jpn J Vet Res. 2015 Aug;63(3):151-8 - PubMed
  66. Nat Genet. 2016 Dec;48(12):1535-1543 - PubMed
  67. J Clin Microbiol. 2009 Aug;47(8):2551-9 - PubMed
  68. Clin Microbiol Infect. 2011 Jul;17(7):1013-9 - PubMed
  69. Emerg Infect Dis. 2017 Mar;23(3):423-429 - PubMed
  70. Vaccine. 2014 Oct 14;32(45):5998-6004 - PubMed
  71. PLoS Biol. 2008 Dec 16;6(12):e311 - PubMed
  72. Lancet Infect Dis. 2017 Jan;17(1):e21-e25 - PubMed
  73. PLoS One. 2009 Nov 12;4(11):e7815 - PubMed
  74. J Infect Dis. 2002 Jul 1;186(1):74-80 - PubMed
  75. Nat Microbiol. 2018 Feb;3(2):181-188 - PubMed
  76. Fly (Austin). 2012 Apr-Jun;6(2):80-92 - PubMed
  77. Genome Biol Evol. 2015 Jul 10;7(8):2173-87 - PubMed
  78. Vet Med Int. 2012;2012:236205 - PubMed
  79. J Clin Microbiol. 2012 Sep;50(9):3136-8 - PubMed
  80. J Clin Microbiol. 2014 Aug;52(8):2834-43 - PubMed
  81. Sci Rep. 2018 Jan 17;8(1):894 - PubMed
  82. J Clin Microbiol. 2004 Apr;42(4):1818-21 - PubMed
  83. Biol Lett. 2006 Sep 22;2(3):460-2 - PubMed
  84. Vet J. 2011 Jun;188(3):359-61 - PubMed
  85. Res Vet Sci. 2003 Feb;74(1):1-15 - PubMed
  86. Nat Rev Microbiol. 2018 Apr;16(4):202-213 - PubMed
  87. Emerg Infect Dis. 2013 Mar;19(3):460-3 - PubMed
  88. J Clin Microbiol. 1994 Oct;32(10):2425-33 - PubMed
  89. Emerg Infect Dis. 2016 Mar;22(3):570-2 - PubMed
  90. Int J Tuberc Lung Dis. 2013 Jun;17(6):752-8 - PubMed
  91. Bioinformatics. 2004 Jan 22;20(2):289-90 - PubMed
  92. BMC Genomics. 2017 Feb 16;18(1):180 - PubMed
  93. J Bacteriol. 2006 Jun;188(12):4271-87 - PubMed

Publication Types

Grant support