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Front Plant Sci. 2018 Nov 14;9:1629. doi: 10.3389/fpls.2018.01629. eCollection 2018.

Comparative Analysis of the Nodule Transcriptomes of .

Frontiers in plant science

Marco G Salgado, Robin van Velzen, Thanh Van Nguyen, Kai Battenberg, Alison M Berry, Daniel Lundin, Katharina Pawlowski

Affiliations

  1. Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.
  2. Laboratory of Molecular Biology, Department of Plant Sciences, Wageningen University, Wageningen, Netherlands.
  3. Department of Plant Sciences, University of California, Davis, Davis, CA, United States.
  4. Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, Kalmar, Sweden.
  5. Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

PMID: 30487804 PMCID: PMC6246699 DOI: 10.3389/fpls.2018.01629

Abstract

Two types of nitrogen-fixing root nodule symbioses are known, rhizobial and actinorhizal symbioses. The latter involve plants of three orders, Fagales, Rosales, and Cucurbitales. To understand the diversity of plant symbiotic adaptation, we compared the nodule transcriptomes of

Keywords: Nod factor receptor; actinorhiza; defensin; divergent evolution; nitrogen metabolism; nitrogen-fixing root nodules; subtilase

References

  1. Plant Physiol. 2004 Jul;135(3):1849-62 - PubMed
  2. Nature. 2015 Jul 16;523(7560):308-12 - PubMed
  3. Plant Cell Physiol. 2013 Oct;54(10):1711-23 - PubMed
  4. Mol Plant Microbe Interact. 1995 Mar-Apr;8(2):218-27 - PubMed
  5. Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12477-82 - PubMed
  6. ISME J. 2015 Aug;9(8):1723-33 - PubMed
  7. Semin Cell Dev Biol. 2018 Feb 22;:null - PubMed
  8. Proc Natl Acad Sci U S A. 1993 Jul 1;90(13):6091-4 - PubMed
  9. Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301 - PubMed
  10. Plant Cell. 2004 Feb;16(2):332-41 - PubMed
  11. J Mol Biol. 2001 Jan 19;305(3):567-80 - PubMed
  12. Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3821-32 - PubMed
  13. Plant Physiol. 2009 Sep;151(1):421-32 - PubMed
  14. J Biol Chem. 2005 Jul 1;280(26):25277-83 - PubMed
  15. Sci Rep. 2015 Aug 19;5:13112 - PubMed
  16. Nucleic Acids Res. 2016 Jan 4;44(D1):D471-80 - PubMed
  17. New Phytol. 2016 Jul;211(2):411-7 - PubMed
  18. Plant Physiol. 2011 Jun;156(2):700-11 - PubMed
  19. Mol Plant Microbe Interact. 2006 Sep;19(9):970-5 - PubMed
  20. Plant Mol Biol. 2006 Jul;61(4-5):769-79 - PubMed
  21. BMC Bioinformatics. 2011 Aug 04;12:323 - PubMed
  22. Plant J. 2007 Oct;52(1):30-40 - PubMed
  23. J Exp Bot. 2006;57(3):479-88 - PubMed
  24. Plant Mol Biol. 1996 Dec;32(6):1177-84 - PubMed
  25. Microbiol Mol Biol Rev. 2002 Jun;66(2):203-22 - PubMed
  26. Nature. 2003 Oct 9;425(6958):585-92 - PubMed
  27. Plant Signal Behav. 2016 Dec;11(12):e1265723 - PubMed
  28. Mol Plant Microbe Interact. 2010 May;23(5):593-607 - PubMed
  29. Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20117-22 - PubMed
  30. Plant Cell. 1989 Apr;1(4):391-401 - PubMed
  31. BMC Genomics. 2016 Oct 12;17(1):796 - PubMed
  32. Mol Plant Microbe Interact. 2006 Apr;19(4):441-50 - PubMed
  33. Biochemistry. 2010 May 18;49(19):4085-93 - PubMed
  34. Plant Physiol. 1999 Jun;120(2):411-20 - PubMed
  35. Bioinformatics. 2015 Oct 1;31(19):3210-2 - PubMed
  36. Plant J. 2015 Feb;81(3):467-79 - PubMed
  37. Bioinformatics. 2009 May 1;25(9):1105-11 - PubMed
  38. Plant J. 1996 Aug;10(2):361-8 - PubMed
  39. Curr Biol. 2005 Mar 29;15(6):531-5 - PubMed
  40. Oecologia. 2014 Sep;176(1):1-10 - PubMed
  41. Plant J. 2003 May;34(4):495-506 - PubMed
  42. Mol Plant Microbe Interact. 2016 Oct;29(10):786-796 - PubMed
  43. Plant Physiol. 2015 Oct;169(2):1254-65 - PubMed
  44. New Phytol. 2018 Feb;217(3):1029-1034 - PubMed
  45. Plant Physiol. 1987 Apr;83(4):728-31 - PubMed
  46. Nat Methods. 2011 Sep 29;8(10):785-6 - PubMed
  47. Biochim Biophys Acta. 1973 May 30;305(2):445-54 - PubMed
  48. Nat Protoc. 2013 Aug;8(8):1494-512 - PubMed
  49. BMC Bioinformatics. 2014 Oct 04;15:338 - PubMed
  50. Nat Biotechnol. 2011 May 15;29(7):644-52 - PubMed
  51. PLoS One. 2018 Jan 5;13(1):e0190884 - PubMed
  52. New Phytol. 2009;183(4):967-79 - PubMed
  53. J Exp Bot. 2015 May;66(10):2877-87 - PubMed
  54. Science. 2011 Feb 18;331(6019):909-12 - PubMed
  55. Front Plant Sci. 2015 Jul 30;6:534 - PubMed
  56. Plant Physiol. 2004 Oct;136(2):3191-7 - PubMed
  57. Gene. 2007 Aug 15;398(1-2):78-85 - PubMed
  58. Proc Natl Acad Sci U S A. 2018 May 15;115(20):E4700-E4709 - PubMed
  59. Plant J. 2011 Jan;65(2):244-52 - PubMed
  60. Annu Rev Plant Biol. 2011;62:105-25 - PubMed
  61. Plant Physiol Biochem. 2005 Aug;43(8):729-45 - PubMed
  62. Plant Cell Physiol. 2016 Nov;57(11):2283-2290 - PubMed
  63. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W29-37 - PubMed
  64. Bioinformatics. 2014 May 1;30(9):1312-3 - PubMed
  65. Int Rev Cell Mol Biol. 2015;316:111-58 - PubMed
  66. J Mol Biol. 1990 Oct 5;215(3):403-10 - PubMed
  67. Genome Res. 2007 Jan;17(1):7-15 - PubMed
  68. Plant Physiol. 2016 Nov;172(3):2033-2043 - PubMed
  69. Plant J. 2009 Oct;60(1):168-80 - PubMed
  70. Int J Syst Bacteriol. 1996 Jan;46(1):1-9 - PubMed
  71. J Comput Biol. 2010 Mar;17(3):337-54 - PubMed
  72. Plant Cell. 1991 Jan;3(1):11-22 - PubMed
  73. Plant Biol (Stuttg). 2007 Nov;9(6):776-85 - PubMed
  74. J Exp Bot. 2005 Jul;56(417):1797-804 - PubMed
  75. Plant Physiol. 2007 Sep;145(1):183-91 - PubMed
  76. Nucleic Acids Res. 2006 Aug 07;34(13):3771-8 - PubMed
  77. Am J Bot. 2010 Aug;97(8):1296-303 - PubMed
  78. Nat Plants. 2017 May 04;3(5):17048 - PubMed
  79. Nature. 2004 Dec 9;432(7018):779-82 - PubMed
  80. Phytochemistry. 2015 Apr;112:80-3 - PubMed
  81. Science. 2010 Feb 26;327(5969):1122-6 - PubMed
  82. Planta. 2006 Apr;223(5):1033-40 - PubMed
  83. Mol Plant Microbe Interact. 2007 Dec;20(12):1596-603 - PubMed
  84. Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):478-83 - PubMed
  85. PLoS One. 2013 Aug 29;8(8):e72442 - PubMed
  86. Plant Cell. 1995 Jul;7(7):869-885 - PubMed
  87. Nat Rev Microbiol. 2013 Apr;11(4):252-63 - PubMed
  88. Plant Sci. 2017 Nov;264:168-178 - PubMed
  89. Protoplasma. 2012 Oct;249(4):967-79 - PubMed
  90. Antonie Van Leeuwenhoek. 2018 Aug 1;:null - PubMed
  91. Plant Cell. 1995 Feb;7(2):213-23 - PubMed
  92. Plant J. 2009 Jun;58(5):766-77 - PubMed
  93. Mol Plant Microbe Interact. 2003 Jul;16(7):600-7 - PubMed
  94. BMC Plant Biol. 2012 Jan 03;12:2 - PubMed
  95. Trends Plant Sci. 2004 Sep;9(9):449-56 - PubMed
  96. BMC Evol Biol. 2010 Jul 13;10:210 - PubMed
  97. Plant Physiol. 2013 May;162(1):107-15 - PubMed
  98. PLoS One. 2015 May 28;10(5):e0127630 - PubMed
  99. Nat Commun. 2017 Feb 23;8:14534 - PubMed
  100. Plant Physiol. 2018 Feb;176(2):1049-1060 - PubMed
  101. J Biol Chem. 2006 Oct 13;281(41):30957-66 - PubMed
  102. New Phytol. 2018 Aug;219(3):1018-1030 - PubMed
  103. Mitochondrion. 2011 Jul;11(4):537-43 - PubMed
  104. Mol Plant Microbe Interact. 2000 Jan;13(1):113-7 - PubMed
  105. Plant J. 2010 Feb 1;61(3):482-94 - PubMed
  106. Mol Plant Microbe Interact. 2017 Jun;30(6):489-501 - PubMed
  107. Plant Cell. 1995 Jun;7(6):785-94 - PubMed
  108. Proc Natl Acad Sci U S A. 1995 Mar 28;92(7):2647-51 - PubMed
  109. Front Chem. 2017 Mar 29;5:21 - PubMed

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