Display options
Cite
Alseekh S, Bermudez L, de Haro LA, et al. Crop metabolomics: from diagnostics to assisted breeding. Metabolomics. 2018;14(11):148doi: 10.1007/s11306-018-1446-5.
Alseekh, S., Bermudez, L., de Haro, L. A., Fernie, A. R., & Carrari, F. (2018). Crop metabolomics: from diagnostics to assisted breeding. Metabolomics : Official journal of the Metabolomic Society, 14(11), 148. https://doi.org/10.1007/s11306-018-1446-5
Alseekh, Saleh, et al. "Crop metabolomics: from diagnostics to assisted breeding." Metabolomics : Official journal of the Metabolomic Society vol. 14,11 (2018): 148. doi: https://doi.org/10.1007/s11306-018-1446-5
Alseekh S, Bermudez L, de Haro LA, Fernie AR, Carrari F. Crop metabolomics: from diagnostics to assisted breeding. Metabolomics. 2018 Nov 03;14(11):148. doi: 10.1007/s11306-018-1446-5. PMID: 30830402.
Copy Download .nbib Format: NLM
Share it on

Metabolomics. 2018 Nov 03;14(11):148. doi: 10.1007/s11306-018-1446-5.

Crop metabolomics: from diagnostics to assisted breeding.

Metabolomics : Official journal of the Metabolomic Society

Saleh Alseekh, Luisa Bermudez, Luis Alejandro de Haro, Alisdair R Fernie, Fernando Carrari

Affiliations

  1. Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
  2. Center of Plant System Biology and Biotechnology, 4000, Plovdiv, Bulgaria.
  3. Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), PO Box 25, B1686WAA, Castelar, Argentina.
  4. Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina.
  5. Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE-UBA-CONICET), Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina.
  6. Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), PO Box 25, B1686WAA, Castelar, Argentina. [email protected].
  7. Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina. [email protected].
  8. Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, São Paulo, 05508-090, Brazil. [email protected].
  9. Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE-UBA-CONICET), Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina. [email protected].

PMID: 30830402 DOI: 10.1007/s11306-018-1446-5

Abstract

BACKGROUND: Until recently, plant metabolomics have provided a deep understanding on the metabolic regulation in individual plants as experimental units. The application of these techniques to agricultural systems subjected to more complex interactions is a step towards the implementation of translational metabolomics in crop breeding.

AIM OF REVIEW: We present here a review paper discussing advances in the knowledge reached in the last years derived from the application of metabolomic techniques that evolved from biomarker discovery to improve crop yield and quality.

KEY SCIENTIFIC CONCEPTS OF REVIEW: Translational metabolomics applied to crop breeding programs.

Keywords: Crop plant breeding; Mass spectrometry; Metabolic traits; Nuclear magnetic resonance spectroscopy; Translational metabolomics

References

  1. Metabolites. 2017 Aug 23;7(3): - PubMed
  2. New Phytol. 2012 Jan;193(1):96-108 - PubMed
  3. Sci Rep. 2016 Feb 10;6:20942 - PubMed
  4. Cell Mol Biol (Noisy-le-grand). 2007 Apr 15;53(1):15-25 - PubMed
  5. Food Chem. 2016 Sep 1;206:146-55 - PubMed
  6. Plant Mol Biol. 2017 Aug;94(6):577-594 - PubMed
  7. BMC Genomics. 2014 Aug 13;15:681 - PubMed
  8. Mol Plant. 2015 Jan;8(1):58-67 - PubMed
  9. Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20320-5 - PubMed
  10. J Agric Food Chem. 2016 Mar 16;64(10):2162-72 - PubMed
  11. PLoS One. 2017 Feb 28;12(2):e0173069 - PubMed
  12. Plant Physiol. 2000 Jul;123(3):817-24 - PubMed
  13. Plant Cell. 2017 Oct;29(10):2374-2392 - PubMed
  14. Science. 2017 Jan 27;355(6323):391-394 - PubMed
  15. PLoS One. 2017 Jun 1;12(6):e0177883 - PubMed
  16. Plant Biotechnol J. 2018 Aug;16(8):1464-1475 - PubMed
  17. Nat Commun. 2015 Oct 26;6:8635 - PubMed
  18. BMC Plant Biol. 2017 Oct 16;17(1):165 - PubMed
  19. Curr Opin Plant Biol. 2015 Jun;25:79-89 - PubMed
  20. BMC Genomics. 2016 Nov 7;17(1):889 - PubMed
  21. BMC Plant Biol. 2014 Nov 25;14:336 - PubMed
  22. BMC Syst Biol. 2011 Oct 28;5:176 - PubMed
  23. Nat Commun. 2014 Jun 26;5:3027 - PubMed
  24. PLoS One. 2016 May 06;11(5):e0154423 - PubMed
  25. J Proteomics. 2012 May 17;75(9):2670-84 - PubMed
  26. J Agric Food Chem. 2009 Feb 25;57(4):1481-90 - PubMed
  27. Nat Plants. 2016 Dec 22;3:16205 - PubMed
  28. Front Plant Sci. 2015 Dec 24;6:1116 - PubMed
  29. Sci Rep. 2016 Feb 16;6:21625 - PubMed
  30. Front Plant Sci. 2016 May 19;7:664 - PubMed
  31. BMC Genomics. 2016 Dec 13;17(1):1021 - PubMed
  32. Plant Physiol Biochem. 2017 Feb;111:257-265 - PubMed
  33. J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Aug;855(1):71-9 - PubMed
  34. Mol Plant. 2012 Jul;5(4):865-75 - PubMed
  35. Plant Cell. 2017 May;29(5):919-943 - PubMed
  36. J Agric Food Chem. 2016 Mar 9;64(9):1869-78 - PubMed
  37. PLoS Genet. 2013;9(12):e1004043 - PubMed
  38. G3 (Bethesda). 2013 Aug 07;3(8):1287-99 - PubMed
  39. Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4759-64 - PubMed
  40. Plant Physiol. 2004 Dec;136(4):4159-68 - PubMed
  41. FEBS Lett. 2012 Sep 21;586(19):3150-8 - PubMed
  42. Front Plant Sci. 2015 May 19;6:334 - PubMed
  43. Cell. 2018 Jan 11;172(1-2):249-261.e12 - PubMed
  44. J Agric Food Chem. 2016 Sep 7;64(35):6723-9 - PubMed
  45. Nat Biotechnol. 2006 Apr;24(4):447-54 - PubMed
  46. Sci Rep. 2016 Jul 21;6:30143 - PubMed
  47. Plant Physiol Biochem. 2016 Oct;107:33-44 - PubMed
  48. Front Plant Sci. 2017 Apr 27;8:639 - PubMed
  49. Protoplasma. 2017 Mar;254(2):1017-1030 - PubMed
  50. Plant Physiol. 2015 Dec;169(4):3002-20 - PubMed
  51. Sci Rep. 2014 Jan 24;4:3859 - PubMed
  52. Crit Rev Biotechnol. 2016;36(3):535-41 - PubMed
  53. Front Plant Sci. 2015 Aug 31;6:664 - PubMed
  54. Plant Physiol. 2015 Dec;169(4):2665-83 - PubMed
  55. J Sci Food Agric. 2018 Jan;98(2):467-477 - PubMed
  56. Plant Physiol. 2014 Jun 3;165(3):1120-1132 - PubMed
  57. Cell Mol Life Sci. 2012 Oct;69(19):3225-43 - PubMed
  58. Front Plant Sci. 2015 Feb 17;6:49 - PubMed
  59. PLoS One. 2015 Jul 13;10(7):e0131408 - PubMed
  60. Curr Opin Biotechnol. 2016 Dec;42:126-132 - PubMed
  61. Front Plant Sci. 2018 Apr 30;9:571 - PubMed
  62. Plant J. 2011 Oct;68(2):326-36 - PubMed
  63. Plant J. 2016 Oct;88(2):219-227 - PubMed
  64. Sci Rep. 2014 May 27;4:5067 - PubMed
  65. Plant Mol Biol. 2017 Jul;94(4-5):549-564 - PubMed
  66. J Exp Bot. 2013 Nov;64(16):5049-63 - PubMed
  67. Nat Genet. 2012 Jan 15;44(2):217-20 - PubMed
  68. Gigascience. 2016 Mar 02;5:11 - PubMed
  69. Trends Plant Sci. 2010 Aug;15(8):462-70 - PubMed
  70. J Exp Bot. 2015 Jun;66(11):3391-404 - PubMed
  71. Plant J. 2012 May;70(4):624-36 - PubMed
  72. Curr Opin Plant Biol. 2015 Apr;24:10-6 - PubMed
  73. PLoS One. 2017 May 12;12(5):e0177509 - PubMed
  74. Metabolomics. 2016;12:82 - PubMed
  75. Nat Genet. 2014 Sep;46(9):1034-8 - PubMed
  76. Semin Cell Dev Biol. 2018 Nov;83:86-94 - PubMed
  77. Ann Bot. 2014 Dec;114(8):1571-96 - PubMed
  78. Chimia (Aarau). 2017 Apr 26;71(4):156-159 - PubMed
  79. Sci Rep. 2017 Feb 24;7:43363 - PubMed
  80. Plant J. 2018 Jun;94(6):933-942 - PubMed
  81. Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):8872-7 - PubMed
  82. Plant Cell Physiol. 2016 Sep;57(9):1943-60 - PubMed
  83. Plants (Basel). 2016 Oct 10;5(4): - PubMed
  84. Plant Biotechnol J. 2013 Feb;11(2):142-56 - PubMed
  85. Curr Opin Plant Biol. 2018 Jun;43:63-70 - PubMed
  86. BMC Genomics. 2014 Apr 17;15:217 - PubMed
  87. New Phytol. 2016 Sep;211(4):1295-310 - PubMed
  88. Plant J. 2014 Oct;80(1):136-48 - PubMed
  89. J Anal Methods Chem. 2015;2015:350259 - PubMed
  90. Plant Biotechnol J. 2011 Feb;9(2):136-50 - PubMed
  91. Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):15624-9 - PubMed
  92. Anal Chem. 2010 May 1;82(9):3573-80 - PubMed
  93. Mol Plant. 2016 Nov 7;9(11):1520-1534 - PubMed
  94. Genetics. 2014 Dec;198(4):1699-716 - PubMed
  95. Plant Cell Physiol. 2015 Sep;56(9):1681-96 - PubMed
  96. J Exp Bot. 2012 Sep;63(14):5017-33 - PubMed
  97. Plant Cell. 2008 Mar;20(3):509-23 - PubMed
  98. J Exp Bot. 2016 Jun;67(12):3731-45 - PubMed
  99. Front Plant Sci. 2017 Nov 15;8:1961 - PubMed
  100. Nature. 2012 May 30;485(7400):635-41 - PubMed
  101. J Sci Food Agric. 2018 Aug;98(11):4128-4134 - PubMed
  102. BMC Plant Biol. 2016 Feb 01;16:38 - PubMed
  103. Plant J. 2013 Sep;75(6):977-88 - PubMed
  104. Mol Plant. 2018 Sep 10;11(9):1147-1165 - PubMed
  105. Annu Rev Plant Biol. 2011;62:251-72 - PubMed
  106. Trends Plant Sci. 2004 Sep;9(9):418-25 - PubMed
  107. Plant J. 2018 Mar;93(6):1116-1128 - PubMed
  108. Plant Physiol. 2015 Nov;169(3):1499-511 - PubMed
  109. Trends Plant Sci. 2014 Oct;19(10):637-46 - PubMed
  110. Sci Rep. 2017 Jul 12;7(1):5196 - PubMed
  111. Nat Genet. 2014 Jul;46(7):714-21 - PubMed
  112. J Proteomics. 2016 Jun 30;143:318-333 - PubMed
  113. Plant Mol Biol. 2017 Aug;94(6):669-685 - PubMed
  114. Front Plant Sci. 2016 Jul 11;7:953 - PubMed
  115. BMC Genomics. 2015 Jun 27;16:477 - PubMed
  116. Nat Plants. 2017 Jun 26;3:17097 - PubMed
  117. Front Plant Sci. 2017 Aug 07;8:1302 - PubMed
  118. Plant Physiol. 2016 Dec;172(4):2132-2153 - PubMed
  119. Science. 2000 Jan 14;287(5451):303-5 - PubMed
  120. Plant Sci. 2016 Nov;252:347-357 - PubMed
  121. Metabolomics. 2017;13(11):144 - PubMed
  122. J Agric Food Chem. 2013 Jun 26;61(25):5987-95 - PubMed
  123. Curr Opin Biotechnol. 2017 Feb;43:41-48 - PubMed
  124. Plant Cell. 2015 Jul;27(7):1839-56 - PubMed
  125. Food Chem. 2017 Feb 15;217:610-619 - PubMed
  126. J Exp Bot. 2016 Sep;67(17):5145-57 - PubMed
  127. J Exp Bot. 2014 Oct;65(19):5619-30 - PubMed
  128. Nat Genet. 2014 Nov;46(11):1220-6 - PubMed
  129. Biotechnol Lett. 2006 Dec;28(24):1983-91 - PubMed
  130. Nat Commun. 2013;4:1510 - PubMed
  131. PLoS One. 2017 Sep 6;12(9):e0184095 - PubMed

MeSH terms

Publication Types

Grant support