Display options
Share it on

Microb Cell. 2019 Sep 27;6(10):454-481. doi: 10.15698/mic2019.10.693.

Gut microbial metabolites in depression: understanding the biochemical mechanisms.

Microbial cell (Graz, Austria)

Giorgia Caspani, Sidney Kennedy, Jane A Foster, Jonathan Swann

Affiliations

  1. Computational Systems Medicine, Department of Surgery and Cancer, Imperial College London, UK.
  2. Centre for Mental Health and Krembil Research Centre, University Health Network, University of Toronto, Toronto, ON, CA.
  3. Mental Health Services, St. Michael's Hospital, University of Toronto, Toronto, ON, CA.
  4. Department of Psychiatry, University of Toronto, Toronto, ON, CA.
  5. Keenan Research Centre for Biomedical Science, Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, ON, CA.
  6. Department of Psychiatry & Behavioral Neurosciences, McMaster University, Hamilton, Ontario, Canada.

PMID: 31646148 PMCID: PMC6780009 DOI: 10.15698/mic2019.10.693

Abstract

Gastrointestinal and central function are intrinsically connected by the gut microbiota, an ecosystem that has co-evolved with the host to expand its biotransformational capabilities and interact with host physiological processes by means of its metabolic products. Abnormalities in this microbiota-gut-brain axis have emerged as a key component in the pathophysiology of depression, leading to more research attempting to understand the neuroactive potential of the products of gut microbial metabolism. This review explores the potential for the gut microbiota to contribute to depression and focuses on the role that microbially-derived molecules - neurotransmitters, short-chain fatty acids, indoles, bile acids, choline metabolites, lactate and vitamins - play in the context of emotional behavior. The future of gut-brain axis research lies is moving away from association, towards the mechanisms underlying the relationship between the gut bacteria and depressive behavior. We propose that direct and indirect mechanisms exist through which gut microbial metabolites affect depressive behavior: these include (i) direct stimulation of central receptors, (ii) peripheral stimulation of neural, endocrine, and immune mediators, and (iii) epigenetic regulation of histone acetylation and DNA methylation. Elucidating these mechanisms is essential to expand our understanding of the etiology of depression, and to develop new strategies to harness the beneficial psychotropic effects of these molecules. Overall, the review highlights the potential for dietary interventions to represent such novel therapeutic strategies for major depressive disorder.

Keywords: bile acids; indole; lactate; mental health; microbiome; tryptophan; vitamins

Conflict of interest statement

Conflict of interest: The authors declare no conflict of interest.

References

  1. Sci Rep. 2018 Jan 23;8(1):1395 - PubMed
  2. Atherosclerosis. 2015 Sep;242(1):141-4 - PubMed
  3. J Microbiol Biotechnol. 2007 Jan;17(1):104-9 - PubMed
  4. Neuropsychopharmacology. 2007 Jan;32(1):216-24 - PubMed
  5. Neuropsychopharmacology. 2014 Aug;39(9):2221-32 - PubMed
  6. Neuroscience. 2015 Apr 2;290:126-37 - PubMed
  7. Curr Opin Gastroenterol. 2012 Mar;28(2):159-65 - PubMed
  8. Neuropharmacology. 2009 Jul;57(1):67-74 - PubMed
  9. Behav Brain Res. 2016 Feb 15;299:51-8 - PubMed
  10. Fundam Clin Pharmacol. 2018 Aug;32(4):363-377 - PubMed
  11. Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):16050-5 - PubMed
  12. J Neurochem. 1998 May;70(5):1998-2003 - PubMed
  13. Neuroreport. 2017 Nov 8;28(16):1078-1084 - PubMed
  14. Anal Biochem. 2017 Jun 1;526:9-21 - PubMed
  15. Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3698-703 - PubMed
  16. Pharm Res. 1999 Mar;16(3):415-9 - PubMed
  17. Annu Rev Biochem. 2003;72:137-74 - PubMed
  18. Gut Microbes. 2014 Mar-Apr;5(2):202-7 - PubMed
  19. Nat Rev Immunol. 2016 May 27;16(6):341-52 - PubMed
  20. World J Biol Psychiatry. 2012 Sep;13(6):458-67 - PubMed
  21. Immunity. 2014 Aug 21;41(2):296-310 - PubMed
  22. PLoS One. 2015 Jun 15;10(6):e0129501 - PubMed
  23. Nat Rev Immunol. 2006 Apr;6(4):318-28 - PubMed
  24. Eur J Neurosci. 2016 Nov;44(10):2829-2845 - PubMed
  25. Proc Nutr Soc. 2015 Aug;74(3):328-36 - PubMed
  26. Neurogastroenterol Motil. 2014 Aug;26(8):1155-62 - PubMed
  27. Neuroimage. 2016 Jan 15;125:988-995 - PubMed
  28. Nat Commun. 2014 Apr 29;5:3611 - PubMed
  29. J Lipid Res. 2009 Aug;50(8):1509-20 - PubMed
  30. Prog Neuropsychopharmacol Biol Psychiatry. 2011 Jan 15;35(1):60-6 - PubMed
  31. J Lipid Res. 2010 May;51(5):1101-12 - PubMed
  32. J Biol Chem. 1999 Jul 30;274(31):21937-42 - PubMed
  33. Ann N Y Acad Sci. 2005 Aug;1053:334-47 - PubMed
  34. Front Psychiatry. 2018 Sep 27;9:454 - PubMed
  35. Gastroenterology. 2014 Jun;146(7):1763-74 - PubMed
  36. Behav Brain Res. 2009 Jun 8;200(1):122-7 - PubMed
  37. Br J Nutr. 2011 Mar;105(5):755-64 - PubMed
  38. Metab Brain Dis. 2006 Mar;21(1):51-62 - PubMed
  39. Acta Pharm Sin B. 2015 Mar;5(2):129-34 - PubMed
  40. Microb Ecol Health Dis. 2012 Aug 24;23:null - PubMed
  41. Prog Neuropsychopharmacol Biol Psychiatry. 1989;13(6):841-63 - PubMed
  42. Compr Psychiatry. 1997 Nov-Dec;38(6):305-14 - PubMed
  43. Front Immunol. 2017 Sep 15;8:1108 - PubMed
  44. Front Behav Neurosci. 2015 Mar 30;9:70 - PubMed
  45. Diabetes. 2012 Feb;61(2):364-71 - PubMed
  46. BMC Microbiol. 2014 Jul 15;14:189 - PubMed
  47. Nutrients. 2011 Jan;3(1):118-34 - PubMed
  48. J Psychopharmacol. 2005 May;19(3):267-75 - PubMed
  49. Cell Rep. 2014 Nov 20;9(4):1202-8 - PubMed
  50. Front Pharmacol. 2010 Oct 04;1:124 - PubMed
  51. Nat Med. 2014 Feb;20(2):159-66 - PubMed
  52. Nutrition. 2010 Jun;26(6):653-61 - PubMed
  53. J Psychiatr Res. 2016 Nov;82:109-18 - PubMed
  54. Brain Behav Immun. 2015 Aug;48:186-94 - PubMed
  55. J Cell Sci. 2014 Oct 15;127(Pt 20):4368-80 - PubMed
  56. J Neurochem. 2009 Aug;110(4):1226-40 - PubMed
  57. Am J Physiol Gastrointest Liver Physiol. 2012 Dec 1;303(11):G1288-95 - PubMed
  58. Neurosci Lett. 2016 Jun 20;625:56-63 - PubMed
  59. Neurobiol Dis. 2018 Mar;111:12-25 - PubMed
  60. PLoS One. 2013 Sep 18;8(9):e75721 - PubMed
  61. J Psychopharmacol. 1991 Jan;5(3):202-6 - PubMed
  62. Biol Psychiatry. 1999 Aug 15;46(4):498-505 - PubMed
  63. Drugs. 1994 Aug;48(2):137-52 - PubMed
  64. Br J Cancer. 1993 Dec;68(6):1080-7 - PubMed
  65. Behav Brain Res. 2009 Jun 8;200(1):33-41 - PubMed
  66. Science. 2012 Jun 8;336(6086):1262-7 - PubMed
  67. Prog Neuropsychopharmacol Biol Psychiatry. 1994 Nov;18(7):1121-7 - PubMed
  68. Proc Natl Acad Sci U S A. 2000 Jun 20;97(13):7500-2 - PubMed
  69. Brain Res. 2007 Jun 2;1151:1-11 - PubMed
  70. J Neuroinflammation. 2012 Apr 24;9:74 - PubMed
  71. Am J Psychiatry. 1990 May;147(5):591-5 - PubMed
  72. Nutrients. 2016 Jan 27;8(2):68 - PubMed
  73. FEMS Microbiol Rev. 2010 Jul;34(4):426-44 - PubMed
  74. Nat Neurosci. 2017 Feb;20(2):145-155 - PubMed
  75. Evid Based Ment Health. 2018 Nov;21(4):139-144 - PubMed
  76. Cell Host Microbe. 2015 May 13;17(5):565-76 - PubMed
  77. Physiol Rev. 1990 Apr;70(2):567-90 - PubMed
  78. Bioessays. 2011 Aug;33(8):574-81 - PubMed
  79. J Appl Microbiol. 2012 Aug;113(2):411-7 - PubMed
  80. Neuropharmacology. 2008 Feb;54(2):464-73 - PubMed
  81. J Psychiatr Res. 2019 Apr;111:74-82 - PubMed
  82. J Nutr Biochem. 2018 Jul;57:130-135 - PubMed
  83. Int J Tryptophan Res. 2009 Mar 23;2:45-60 - PubMed
  84. Brain Res. 2018 Feb 1;1680:13-38 - PubMed
  85. J Biol Chem. 1994 Mar 18;269(11):8128-33 - PubMed
  86. J Pharm Biomed Anal. 2017 Sep 5;143:141-146 - PubMed
  87. Front Neurosci. 2018 Apr 09;12:216 - PubMed
  88. Mol Psychiatry. 2016 Jun;21(6):786-96 - PubMed
  89. Appl Environ Microbiol. 1977 Aug;34(2):237-9 - PubMed
  90. Cereb Cortex. 2014 Oct;24(10):2784-95 - PubMed
  91. Neuropsychiatr Dis Treat. 2018 Dec 03;14:3329-3337 - PubMed
  92. J Thromb Haemost. 2007 Jun;5(6):1302-8 - PubMed
  93. Mol Psychiatry. 2018 Feb;23(2):392-399 - PubMed
  94. J Affect Disord. 2000 Nov;60(2):121-30 - PubMed
  95. J Zhejiang Univ Sci B. 2009 Apr;10(4):258-63 - PubMed
  96. Nat Med. 2016 Jun;22(6):598-605 - PubMed
  97. Mol Psychiatry. 2013 Jun;18(6):666-73 - PubMed
  98. Behav Brain Res. 2017 Aug 14;332:280-287 - PubMed
  99. Gut. 2000 Sep;47(3):397-403 - PubMed
  100. Cell. 2015 Dec 17;163(7):1585-95 - PubMed
  101. Acta Pharm Sin B. 2015 Mar;5(2):135-44 - PubMed
  102. Psychiatry Res. 2004 Jan 15;130(1):1-9 - PubMed
  103. World J Gastroenterol. 2007 May 28;13(20):2826-32 - PubMed
  104. Neurochem Res. 2011 Oct;36(10):1850-7 - PubMed
  105. J Cereb Blood Flow Metab. 1991 Jul;11(4):581-6 - PubMed
  106. J Dairy Sci. 2011 Jul;94(7):3288-94 - PubMed
  107. PLoS One. 2011;6(12):e28330 - PubMed
  108. Nature. 2014 Dec 4;516(7529):108-11 - PubMed
  109. Behav Brain Res. 2015 Jan 15;277:32-48 - PubMed
  110. J Psychiatr Res. 2008 Dec;43(2):164-74 - PubMed
  111. J Affect Disord. 1986 Jan-Feb;10(1):9-13 - PubMed
  112. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12511-6 - PubMed
  113. Patient Prefer Adherence. 2012;6:369-88 - PubMed
  114. Nutrients. 2018 Dec 07;10(12):null - PubMed
  115. J Pharm Pharmacol. 1999 Jul;51(7):847-52 - PubMed
  116. J Nutr. 2003 Jul;133(7 Suppl):2485S-2493S - PubMed
  117. J Med Food. 2014 Dec;17(12):1261-72 - PubMed
  118. Cell. 2000 Sep 15;102(6):731-44 - PubMed
  119. Microbiome. 2018 Mar 21;6(1):55 - PubMed
  120. Sci Rep. 2015 Nov 03;5:15994 - PubMed
  121. Cell. 2011 Mar 4;144(5):810-23 - PubMed
  122. J Physiol. 2018 Oct;596(20):4923-4944 - PubMed
  123. Physiol Behav. 1995 Mar;57(3):611-3 - PubMed
  124. Biol Psychiatry. 2011 Apr 15;69(8):804-7 - PubMed
  125. Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):228-33 - PubMed
  126. Gut Microbes. 2016 May 3;7(3):189-200 - PubMed
  127. Neurogastroenterol Motil. 2017 Jan;29(1): - PubMed
  128. Microbiology. 2013 Feb;159(Pt 2):402-10 - PubMed
  129. Mol Metab. 2016 May 27;5(9):743-52 - PubMed
  130. Prikl Biokhim Mikrobiol. 2009 Sep-Oct;45(5):550-4 - PubMed
  131. Neuropharmacology. 2014 Jun;81:292-302 - PubMed
  132. Pharmacol Res. 2015 Mar;93:11-21 - PubMed
  133. Infect Immun. 1994 Jul;62(7):2715-21 - PubMed
  134. Am J Psychiatry. 2009 Jun;166(6):702-10 - PubMed
  135. Trends Pharmacol Sci. 2010 Dec;31(12):580-6 - PubMed
  136. Dig Liver Dis. 2014 Jun;46(6):527-34 - PubMed
  137. Biol Psychiatry. 2017 Oct 1;82(7):472-487 - PubMed
  138. Neuropsychopharmacology. 2019 May;44(6):1152-1162 - PubMed
  139. Gastroenterology. 1998 Mar;114(3):559-78 - PubMed
  140. Nat Neurosci. 2015 Jul;18(7):965-77 - PubMed
  141. J Psychopharmacol. 2018 Apr;32(4):377-384 - PubMed
  142. Nutrients. 2014 Apr 11;6(4):1501-18 - PubMed
  143. J Cell Physiol. 2017 Aug;232(8):2231-2245 - PubMed
  144. Clin Transl Immunology. 2016 Apr 22;5(4):e73 - PubMed
  145. Int J Gen Med. 2015 Feb 04;8:73-8 - PubMed
  146. Adv Nutr. 2012 Jan;3(1):21-38 - PubMed
  147. Proc Natl Acad Sci U S A. 1997 May 13;94(10):5308-13 - PubMed
  148. Brain Res. 2018 Aug 15;1693(Pt B):128-133 - PubMed
  149. Chem Rev. 2010 Aug 11;110(8):4489-97 - PubMed
  150. Mol Psychiatry. 2013 Mar;18(3):369-81 - PubMed
  151. J Neurosci Res. 2009 Jul;87(9):2126-37 - PubMed
  152. Eur J Neurosci. 2000 Dec;12(12):4434-46 - PubMed
  153. Science. 2013 Feb 8;339(6120):708-11 - PubMed
  154. Mol Neurobiol. 2017 Oct;54(8):6391-6411 - PubMed
  155. Front Microbiol. 2016 Feb 17;7:185 - PubMed
  156. Lancet. 1997 Mar 29;349(9056):915-9 - PubMed
  157. J Clin Psychiatry. 2012 Aug;73(8):1128-38 - PubMed
  158. Lancet. 1969 Jan 18;1(7586):132-6 - PubMed
  159. J Proteome Res. 2015 Aug 7;14(8):3382-9 - PubMed
  160. FEBS Lett. 2016 Sep;590(18):3233-42 - PubMed
  161. Front Neurosci. 2017 Nov 07;11:617 - PubMed
  162. J Cancer Res Clin Oncol. 2006 Aug;132(8):487-97 - PubMed
  163. Med Sci Sports Exerc. 2018 Apr;50(4):747-757 - PubMed
  164. Psychoneuroendocrinology. 2014 Apr;42:207-17 - PubMed
  165. Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16767-72 - PubMed
  166. Biol Psychiatry. 1997 Apr 15;41(8):837-43 - PubMed
  167. PLoS One. 2014 Aug 29;9(8):e103740 - PubMed
  168. ISME J. 2014 Oct;8(10):2116-30 - PubMed
  169. J Neurosci Res. 2015 Jul;93(7):1045-55 - PubMed
  170. Microbiome. 2018 Mar 22;6(1):57 - PubMed
  171. Psychopharmacol Bull. 1991;27(3):321-30 - PubMed
  172. J Neural Transm Suppl. 1979;(15):43-54 - PubMed
  173. Eur Arch Psychiatry Clin Neurosci. 2008 Jun;258 Suppl 2:97-106 - PubMed
  174. Appl Environ Microbiol. 2007 Nov;73(22):7283-90 - PubMed
  175. Neuroscience. 2016 Dec 17;339:463-477 - PubMed
  176. Trends Neurosci. 2013 Jul;36(7):396-404 - PubMed
  177. Korean J Fam Med. 2013 Mar;34(2):80-9 - PubMed
  178. Trends Mol Med. 2014 Sep;20(9):509-18 - PubMed
  179. Curr Pharm Des. 2014;20(10):1487-98 - PubMed
  180. Nat Microbiol. 2019 Apr;4(4):623-632 - PubMed
  181. Arch Gen Psychiatry. 2000 Oct;57(10):937-43 - PubMed
  182. Gut Microbes. 2012 Jul-Aug;3(4):394-7 - PubMed
  183. Mcgill J Med. 2006 Jan;9(1):24-7 - PubMed
  184. Indian J Exp Biol. 1995 Aug;33(8):576-9 - PubMed
  185. J Ethnopharmacol. 2011 Sep 1;137(1):690-9 - PubMed
  186. Neuroscience. 2009 Jan 12;158(1):284-92 - PubMed
  187. Front Syst Neurosci. 2013 Apr 23;7:9 - PubMed
  188. Sci Rep. 2016 Sep 21;6:33820 - PubMed
  189. Dokl Biochem. 2000 May-Jun;372(1-6):115-7 - PubMed
  190. Cell. 2015 Apr 9;161(2):264-76 - PubMed
  191. Neurochem Int. 2016 Oct;99:110-132 - PubMed
  192. ACS Chem Neurosci. 2013 Jan 16;4(1):48-63 - PubMed
  193. Mol Psychiatry. 2017 Feb;22(2):257-266 - PubMed
  194. Cell Metab. 2014 Nov 4;20(5):719-730 - PubMed
  195. Immunity. 2013 Aug 22;39(2):372-85 - PubMed
  196. J Lipid Res. 2013 Sep;54(9):2325-40 - PubMed
  197. Endocrinology. 2013 Oct;154(10):3552-64 - PubMed
  198. J Affect Disord. 2005 Jun;86(2-3):305-11 - PubMed
  199. Sci Rep. 2012;2:233 - PubMed
  200. Pharmacol Rep. 2018 Apr;70(2):398-408 - PubMed
  201. Br J Pharmacol. 2004 Mar;141(5):874-80 - PubMed
  202. Neurosci Lett. 2016 Apr 8;618:159-166 - PubMed
  203. Int J Neuropsychopharmacol. 2014 Oct 31;18(2):null - PubMed
  204. Annu Rev Immunol. 1995;13:437-57 - PubMed
  205. J Neurochem. 2010 Apr;113(2):515-29 - PubMed
  206. Eur Arch Psychiatry Clin Neurosci. 1998;248(1):53-8 - PubMed
  207. Neuropsychopharmacology. 2012 May;37(6):1444-54 - PubMed
  208. Behav Brain Res. 2007 Jan 10;176(1):149-69 - PubMed
  209. Nat Med. 2016 Jun;22(6):586-97 - PubMed
  210. J Neurochem. 1991 Oct;57(4):1191-7 - PubMed
  211. Channels (Austin). 2014;8(3):169-71 - PubMed
  212. J Psychiatry Neurosci. 2013 Sep;38(5):294-305 - PubMed
  213. Auton Neurosci. 2000 Dec 20;85(1-3):127-32 - PubMed
  214. J Affect Disord. 2015 Oct 1;185:156-63 - PubMed
  215. Sci Rep. 2018 Aug 23;8(1):12649 - PubMed
  216. Mol Cell Proteomics. 2013 Jan;12(1):207-14 - PubMed
  217. Curr Neurovasc Res. 2015;12(4):312-20 - PubMed
  218. Annu Rev Med. 2009;60:355-66 - PubMed
  219. Neurogastroenterol Motil. 2011 Mar;23(3):255-64, e119 - PubMed
  220. J Physiol. 2004 Jul 1;558(Pt 1):263-75 - PubMed
  221. Cell Host Microbe. 2017 Sep 13;22(3):279-290.e7 - PubMed
  222. Biol Psychiatry. 2000 Dec 1;48(11):1053-61 - PubMed
  223. Mol Biosyst. 2014 Mar 4;10(3):549-61 - PubMed
  224. Altern Med Rev. 2008 Sep;13(3):216-26 - PubMed
  225. BMC Genomics. 2014 Jun 21;15:511 - PubMed
  226. J Cereb Blood Flow Metab. 2015 Jul;35(7):1069-75 - PubMed
  227. Biol Psychiatry. 2007 Jul 1;62(1):55-64 - PubMed
  228. Am J Physiol Gastrointest Liver Physiol. 2008 Apr;294(4):G906-13 - PubMed
  229. J Pharm Biomed Anal. 2017 May 10;138:231-239 - PubMed
  230. Psychiatry Res. 2018 Jun;264:374-379 - PubMed
  231. Front Psychiatry. 2018 Mar 13;9:44 - PubMed
  232. Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):3047-52 - PubMed
  233. Mol Biosyst. 2010 May;6(5):852-61 - PubMed
  234. Am J Clin Nutr. 2016 Jul;104(1):5-14 - PubMed
  235. Nat Neurosci. 2007 Sep;10(9):1116-24 - PubMed

Publication Types

Grant support