Display options
Share it on

Curr Protoc Plant Biol. 2016 Sep;1(3):488-500. doi: 10.1002/cppb.20031.

Telomere-Mediated Chromosomal Truncation for Generating Engineered Minichromosomes in Maize.

Current protocols in plant biology

Nathan C Swyers, Jon P Cody, Morgan E McCaw, Nathaniel D Graham, Changzeng Zhao, Robert T Gaeta, James A Birchler

Affiliations

  1. Division of Biological Sciences, University of Missouri, Columbia, Missouri.

PMID: 31725959 DOI: 10.1002/cppb.20031

Abstract

Minichromosomes have been generated in maize using telomere-mediated truncation. Telomere DNA, because of its repetitive nature, can be difficult to manipulate. The protocols in this unit describe two methods for generating the telomere DNA required for the initiation of telomere-mediated truncation. The resulting DNA can then be used with truncation cassettes for introduction into maize via transformation. © 2016 by John Wiley & Sons, Inc.

Copyright © 2016 John Wiley & Sons, Inc.

Keywords: minichromosomes; telomere cloning; telomere-mediated truncation

References

  1. Ananiev, E.V , Wu, C. , Chamberlin, M. , Svitashev, S. , Schwartz, C. , Gordon-Kamm, W. , and Tingey, S. 2009. Artificial chromosome formation in maize (Zea mays L.). Chromosoma 118:157-177. doi: 10.1007/s00412-008-0191-3. - PubMed
  2. Armstrong, C.L. , Green, C.E. , and Phillips, R.L. 1991. Development and availability of germplasm with High Type-II culture formation response. Maize Genet. Coop. Newsl. 65:92-93. - PubMed
  3. Birchler, J.A. and Han, F. 2009. Maize centromeres: Structure, function, epigenetics. Annu. Rev. Genet. 43: 287-303. - PubMed
  4. Carlson, S.R. , Rudgers, G.W. , Zieler, H. , Mach, J.M. , Luo, S. , Grunden, E. , Krol, C. , Copenhaver, G.P. , and Preuss, D. 2007. Meiotic transmission of an in vitro-assembled autonomous maize minichromosome. PLoS Genet. 3:e179. doi: 10.1371/journal.pgen.0030179. - PubMed
  5. Chan, W. , Verma, C.S. , David, P. , and Gan, S.K. 2013. A comparison and optimization of methods and factors affecting the transformation of Escherichia coli . Biosci. Rep. 33:e00086. doi: 10.1042/BSR20130098. - PubMed
  6. Farr, C. , Fantes, J. , Goodfellow, P. , and Cooke, H. 1991. Functional reintroduction of human telomeres into mammalian cells. Proc. Natl. Acad. Sci. U.S.A. 88:7006-7010. doi: 10.1073/pnas.88.16.7006. - PubMed
  7. Frame, B.R. , Zhang, H. , Cocciolone, S.M. , Sidorenko, L.V , Dietrich, C.R. , Pegg, S.E. , Zhen, S. , Schnable, P.S. , and Wang, K. 2000. Production of transgenic maize from bombarded type II callus: Effect of gold particle size and callus morphology on transformation efficiency. In Vitro Cell. Dev. Pl. 36:21-29. doi: 10.1007/s11627-000-0007-5. - PubMed
  8. Gaeta, R. , Masonbrink, R. , Krishnaswamy, L. , Zhao, C. , and Birchler, J. 2012. Synthetic chromosome platforms in plants. Annu. Rev. Plant Biol. 63:307-330. doi: 10.1146/annurev-arplant-042110-103924. - PubMed
  9. Gaeta, R.T. , Danilova, T.V , Zhao, C. , Masonbrink, R.E. , McCaw, M.E. , and Birchler, J.A. 2011. Recovery of a telomere-truncated chromosome via a compensating translocation in maize. Genome 54:184-195. doi: 10.1139/G10-108. - PubMed
  10. Gaeta, R. , Masonbrink, R. , Zhao, C. , Sanyal, A. , Krishnaswamy, L. , and Birchler, J. 2013. In vivo modification of a maize engineered minichromosome. Chromosoma 122:221-232. doi: 10.1007/s00412-013-0403-3. - PubMed
  11. Gibson, D.G. , Young, L. , Chuang, R.-Y. , Venter, J.C. , Hutchison, C.A , and Smith, H.O. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6:343-345. doi: 10.1038/nmeth.1318. - PubMed
  12. Green, M.R. and Sambrook, J. (eds.) 2012. Molecular Cloning: A Laboratory Manual, 4th ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. - PubMed
  13. Harrington, J.J. , Van Bokkelen, G. , Mays, R.W. , Gustashaw, K. , and Willard, H.F. 1997. Formation of de novo centromeres and construction of first-generation human artificial microchromosomes. Nat. Genet. 15:345-355. doi: 10.1038/ng0497-345. - PubMed
  14. Heller, R. , Brown, K.E. , Burgtorf, C. , and Brown, W.R. 1996. Mini-chromosomes derived from the human Y chromosome by telomere directed chromosome breakage. Proc. Natl. Acad. Sci. U.S.A. 93:7125-7130. doi: 10.1073/pnas.93.14.7125. - PubMed
  15. Hoopes, L.L.M. 2012. Nucleic acid blotting: Southern and northern. Curr. Protoc. Essen. Lab. Techn. 6:8.2.1-8.2.26. doi: 10.1002/9780470089941.et0802s6. - PubMed
  16. Ijdo, J.W. , Wells, R. , Baldini, A. , and Reeders, S.T. 1991. Improved telomere detection using a telomere repeat probe (TTAGGG)n generated by PCR. Nucl. Acids Res. 19:4780. doi: 10.1093/nar/19.17.4780. - PubMed
  17. Kapusi, E. , Ma, L. , Teo, C.H. , Hensel, G. , Himmelbach, A. , Schubert, I. , Mette, M.F. , Kumlehn, J. , and Houben, A. 2012. Telomere-mediated truncation of barley chromosomes. Chromosoma 121:181-190. doi: 10.1007/s00412-011-0351-8. - PubMed
  18. McCaw, M. , Swyers, N. , Graham, N. , Cody, J. , Zhao, C. , and Birchler, J. , 2016a. Preparation of chromosomes from Zea mays . Curr Protoc. Plant Biol. 1:501-508. doi: 10.1002/cppb.20032. - PubMed
  19. McCaw, M. , Graham, N. , Cody, J. , Swyers, N. , Zhao, C. , and Birchler, J. 2016b. Fluorescence in situ hybridization to maize (Zea mays) chromosomes. Curr. Protoc. Plant Biol. 1:529-544. doi: 10.1002/cppb.20033. - PubMed
  20. Murray, A.W. and Szostak, J.W. 1983. Construction of artificial chromosomes in yeast. Nature 305:189-193. doi: 10.1038/305189a0. - PubMed
  21. Nelson, A.D. , Lamb, J.C. , Kobrossly, P.S. , and Shippen, D.E. 2011. Parameters affecting telomere-mediated chromosomal truncation in Arabidopsis. Plant Cell 23:2263-2272. doi: 10.1105/tpc.111.086017. - PubMed
  22. Potter, H. and Heller, R. 2010. Transfection by electroporation. Curr. Protoc. Mol. Biol. 92:9.3.1-9.3.10. doi: 10.1002/0471142727.mb0903s9. - PubMed
  23. Sambrook, J. , Fritsch, E. F. , and Maniatis, T. (eds.) 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. - PubMed
  24. Shendure, J. A. , Porreca, G. J. , Church, G. M. , Gardner, A. F. , Hendrickson, C. L. , Kieleczawa, J. , and Slatko, B. E. 2011. Overview of DNA sequencing strategies. Curr. Protoc. Mol. Biol. 96:7.1.1-7.1.23. doi: 10.1002/0471142727.mb0701s96. - PubMed
  25. Shizuya, H. , Birren, B. , Kim, U.J. , Mancino, V. , Slepak, T. , Tachiiri, Y. , and Simon, M. 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. U.S.A. 89:8794-8797. doi: 10.1073/pnas.89.18.8794. - PubMed
  26. Songstad, D.D. , Armstrong, C.L. , Petersen, W.L. , Hairston, B. , and Hinchee, M.A.W. 1996. Production of transgenic maize plants and progeny by bombardment of Hi-II immature embryos. In Vitro Cell. Dev. Pl. 32:179-183. doi: 10.1007/BF02822763. - PubMed
  27. Southern, E.M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:503-517. - PubMed
  28. Teo, C.H. , Ma, L. , Kapusi, E. , Hensel, G. , Kumlehn, J. , Schubert, I. , Houben, A. , and Mette, M.F. 2011. Induction of telomere-mediated chromosomal truncation and stability of truncated chromosomes in Arabidopsis thaliana . Plant J. 68:28-39. doi: 10.1111/j.1365-313X.2011.04662.x. - PubMed
  29. Woodman, M.E. 2008. Direct PCR of intact bacteria (colony PCR). Curr. Protoc. Microbiol. 9:A.3D.1-A.3D.6. doi: 10.1002/9780471729259.mca03ds9. - PubMed
  30. Xu, C. , Cheng, Z. , and Yu, W. 2012. Construction of rice mini-chromosomes by telomere-mediated chromosomal truncation. Plant J. 70:1070-1079. doi: 10.1111/j.1365-313X.2012.04916.x. - PubMed
  31. Yu, W. , Lamb, J.C. , Han, F. , and Birchler, J.A. 2006. Telomere-mediated chromosomal truncation in maize. Proc. Natl. Acad. Sci. U.S.A. 103:17331-17336. doi: 10.1073/pnas.0605750103. - PubMed
  32. Yu, W. , Han, F. , Gao, Z. , Vega, J.M. , and Birchler, J.A. 2007. Construction and behavior of engineered minichromosomes in maize. Proc. Natl. Acad. Sci. U.S.A. 104:8924-8929. doi: 10.1073/pnas.0700932104. - PubMed

Publication Types