Display options
Cite
Miro E, Rossen JWA, Chlebowicz MA, et al. Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing . Front Microbiol. 2020;10:2961doi: 10.3389/fmicb.2019.02961.
Miro, E., Rossen, J. W. A., Chlebowicz, M. A., Harmsen, D., Brisse, S., Passet, V., Navarro, F., Friedrich, A. W., & García-Cobos, S. (2019). Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing . Frontiers in microbiology, 102961. https://doi.org/10.3389/fmicb.2019.02961
Miro, Elisenda, et al. "Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing ." Frontiers in microbiology vol. 10 (2019): 2961. doi: https://doi.org/10.3389/fmicb.2019.02961
Miro E, Rossen JWA, Chlebowicz MA, Harmsen D, Brisse S, Passet V, Navarro F, Friedrich AW, García-Cobos S. Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing . Front Microbiol. 2020 Jan 31;10:2961. doi: 10.3389/fmicb.2019.02961. eCollection 2019. PMID: 32082262; PMCID: PMC7005014.
Copy Download .nbib Format: NLM
Share it on

Front Microbiol. 2020 Jan 31;10:2961. doi: 10.3389/fmicb.2019.02961. eCollection 2019.

Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing .

Frontiers in microbiology

Elisenda Miro, John W A Rossen, Monika A Chlebowicz, Dag Harmsen, Sylvain Brisse, Virginie Passet, Ferran Navarro, Alex W Friedrich, S García-Cobos

Affiliations

  1. Department of Microbiology, Hospital de la Santa Creu i Sant Pau, Institut d'Investigació Biomèdica Sant Pau (IIB Sant Pau), Barcelona, Spain.
  2. Department of Medical Microbiology and Infection Prevention, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
  3. ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD), Basel, Switzerland.
  4. Department of Periodontology and Restorative Dentistry, University of Münster, Münster, Germany.
  5. Biodiversity and Epidemiology of Bacterial Pathogens, Institut Pasteur, Paris, France.

PMID: 32082262 PMCID: PMC7005014 DOI: 10.3389/fmicb.2019.02961

Abstract

Whole-genome sequencing (WGS)-based typing methods have emerged as promising and highly discriminative epidemiological tools. In this study, we combined gene-by-gene allele calling and core genome single nucleotide polymorphism (cgSNP) approaches to investigate the genetic relatedness of a well-characterized collection of OXA-48

Copyright © 2020 Miro, Rossen, Chlebowicz, Harmsen, Brisse, Passet, Navarro, Friedrich and García-Cobos.

Keywords: K. pneumoniae; OXA-48; WGS; cgMLST; molecular epidemiology; wgMLST

References

  1. Sci Rep. 2016 Feb 11;6:20840 - PubMed
  2. Clin Microbiol Infect. 2018 Apr;24(4):355-360 - PubMed
  3. J Antimicrob Chemother. 2012 Nov;67(11):2640-4 - PubMed
  4. Bioinformatics. 2009 Jan 1;25(1):119-20 - PubMed
  5. Genome Biol. 2014;15(11):524 - PubMed
  6. N Engl J Med. 2012 Jun 14;366(24):2267-75 - PubMed
  7. Bioinformatics. 2018 Sep 1;34(17):3028-3029 - PubMed
  8. Transfusion. 1992 Jan;32(1):83-5 - PubMed
  9. PLoS Genet. 2013 Apr;9(4):e1003471 - PubMed
  10. Bioinformatics. 2014 Jul 15;30(14):2068-9 - PubMed
  11. J Clin Microbiol. 2012 Apr;50(4):1355-61 - PubMed
  12. PLoS One. 2015 Dec 04;10(12):e0144310 - PubMed
  13. Nat Rev Microbiol. 2013 Oct;11(10):728-36 - PubMed
  14. Nat Genet. 2012 Nov;44(11):1215-21 - PubMed
  15. Biomed Res Int. 2014;2014:352862 - PubMed
  16. J Clin Microbiol. 2015 Sep;53(9):2869-76 - PubMed
  17. PLoS One. 2010 Apr 12;5(4):e10141 - PubMed
  18. BMC Genomics. 2012 May 23;13:202 - PubMed
  19. J Clin Microbiol. 2005 Aug;43(8):4178-82 - PubMed
  20. J Clin Microbiol. 2015 Sep;53(9):2861-8 - PubMed
  21. J Clin Microbiol. 2014 Jul;52(7):2365-70 - PubMed
  22. Microb Genom. 2018 Mar;4(3): - PubMed
  23. Enferm Infecc Microbiol Clin. 2014 Dec;32 Suppl 4:17-23 - PubMed
  24. Front Microbiol. 2015 Nov 10;6:1250 - PubMed
  25. J Antimicrob Chemother. 2016 Apr;71(4):887-96 - PubMed
  26. Antimicrob Agents Chemother. 1999 Aug;43(8):2051-5 - PubMed
  27. Front Microbiol. 2017 Mar 08;8:371 - PubMed
  28. Antimicrob Agents Chemother. 2015 Mar;59(3):1656-63 - PubMed
  29. Enferm Infecc Microbiol Clin. 2019 Feb;37(2):82-88 - PubMed
  30. Bioinformatics. 2005 Aug 15;21(16):3422-3 - PubMed
  31. Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903 - PubMed
  32. Bioinformatics. 2013 Apr 15;29(8):1072-5 - PubMed
  33. Emerg Infect Dis. 2014 Nov;20(11):1812-20 - PubMed
  34. Emerg Infect Dis. 2017 Sep;23(9):1462-1470 - PubMed
  35. J Clin Microbiol. 1995 Sep;33(9):2233-9 - PubMed
  36. J Clin Microbiol. 2016 Dec;54(12):2919-2927 - PubMed
  37. Front Microbiol. 2017 May 23;8:909 - PubMed
  38. Sci Transl Med. 2012 Aug 22;4(148):148ra116 - PubMed
  39. Clin Microbiol Infect. 2018 Apr;24(4):350-354 - PubMed

Publication Types