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Calinawan AP, Song X, Ji J, et al. ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies. Proteomics. 2020;20(21):e1900359doi: 10.1002/pmic.201900359.
Calinawan, A. P., Song, X., Ji, J., Dhanasekaran, S. M., Petralia, F., Wang, P., & Reva, B. (2020). ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies. Proteomics, 20(21), e1900359. https://doi.org/10.1002/pmic.201900359
Calinawan, Anna Pamela, et al. "ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies." Proteomics vol. 20,21 (2020): e1900359. doi: https://doi.org/10.1002/pmic.201900359
Calinawan AP, Song X, Ji J, Dhanasekaran SM, Petralia F, Wang P, Reva B. ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies. Proteomics. 2020 Nov;20(21):e1900359. doi: 10.1002/pmic.201900359. Epub 2020 Aug 06. PMID: 32510176; PMCID: PMC7677200.
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Proteomics. 2020 Nov;20(21):e1900359. doi: 10.1002/pmic.201900359. Epub 2020 Aug 06.

ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies.

Proteomics

Anna Pamela Calinawan, Xiaoyu Song, Jiayi Ji, Saravana Mohan Dhanasekaran, Francesca Petralia, Pei Wang, Boris Reva

Affiliations

  1. Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
  2. Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
  3. The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
  4. Department of Pathology, University of Michigan, Ann Arbor, MI, 48109, USA.

PMID: 32510176 PMCID: PMC7677200 DOI: 10.1002/pmic.201900359

Abstract

The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generated extensive multi-omics data resources of deep proteogenomic profiles for multiple cancer types. To enable the broader community of biological and medical researchers to intuitively query, explore, and download data and analysis results from various CPTAC projects, a prototype user-friendly web application called "ProTrack" is built with the CPTAC clear cell renal cell carcinoma (ccRCC) data set (http://ccrcc.cptac-data-view.org). Here the salient features of this application which provides a dynamic, comprehensive, and granular visualization of the rich proteogenomic data is described.

© 2020 Wiley-VCH GmbH.

References

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