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Fabbri MC, Dadousis C, Bozzi R. Estimation of Linkage Disequilibrium and Effective Population Size in Three Italian Autochthonous Beef Breeds. Animals (Basel). 2020;10(6)doi: 10.3390/ani10061034.
Fabbri, M. C., Dadousis, C., & Bozzi, R. (2020). Estimation of Linkage Disequilibrium and Effective Population Size in Three Italian Autochthonous Beef Breeds. Animals : an open access journal from MDPI, 10(6), . https://doi.org/10.3390/ani10061034
Fabbri, Maria Chiara, et al. "Estimation of Linkage Disequilibrium and Effective Population Size in Three Italian Autochthonous Beef Breeds." Animals : an open access journal from MDPI vol. 10,6 (2020). doi: https://doi.org/10.3390/ani10061034
Fabbri MC, Dadousis C, Bozzi R. Estimation of Linkage Disequilibrium and Effective Population Size in Three Italian Autochthonous Beef Breeds. Animals (Basel). 2020 Jun 14;10(6). doi: 10.3390/ani10061034. PMID: 32545850; PMCID: PMC7341513.
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Animals (Basel). 2020 Jun 14;10(6). doi: 10.3390/ani10061034.

Estimation of Linkage Disequilibrium and Effective Population Size in Three Italian Autochthonous Beef Breeds.

Animals : an open access journal from MDPI

Maria Chiara Fabbri, Christos Dadousis, Riccardo Bozzi

Affiliations

  1. Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali, Università di Firenze, 50144 Firenze, Italy.

PMID: 32545850 PMCID: PMC7341513 DOI: 10.3390/ani10061034

Abstract

The objective was to investigate the pattern of linkage disequilibrium (LD) in three local beef breeds, namely, Calvana (n = 174), Mucca Pisana (n = 270), and Pontremolese (n = 44). As a control group, samples of the Italian Limousin breed (n = 100) were used. All cattle were genotyped with the GeneSeek GGP-LDv4 33k SNP chip containing 30,111 SNPs. The genotype quality control for each breed was conducted separately, and SNPs with call rate < 0.95 and minor allele frequency (MAF) > 1% were used for the analysis. LD extent was estimated in PLINK v1.9 using the squared correlation between pairs of loci (

Keywords: conservation; effective population size; linkage disequilibrium; local breeds

References

  1. Genetics. 1964 Jan;49(1):49-67 - PubMed
  2. Genome Res. 2003 Apr;13(4):635-43 - PubMed
  3. Arch Anim Breed. 2019 Apr 02;62(1):143-151 - PubMed
  4. J Anim Sci. 2014 Nov;92(11):4833-42 - PubMed
  5. Sci Rep. 2019 Sep 19;9(1):13546 - PubMed
  6. Front Genet. 2015 Apr 07;6:127 - PubMed
  7. J Anim Sci. 2016 Jul;94(7):2779-88 - PubMed
  8. Front Genet. 2020 Jan 17;10:1304 - PubMed
  9. J Dairy Sci. 2008 Nov;91(11):4414-23 - PubMed
  10. Front Genet. 2015 Mar 20;6:109 - PubMed
  11. BMC Genet. 2009 Apr 24;10:18 - PubMed
  12. Genetics. 2000 May;155(1):421-30 - PubMed
  13. BMC Genet. 2016 Feb 01;17:32 - PubMed
  14. Genetics. 2014 Aug;197(4):1329-41 - PubMed
  15. J Anim Breed Genet. 2006 Feb;123(1):10-6 - PubMed
  16. BMC Genomics. 2008 Apr 24;9:187 - PubMed
  17. Asian-Australas J Anim Sci. 2013 Jun;26(6):772-9 - PubMed
  18. Genet Res. 2007 Feb;89(1):1-6 - PubMed
  19. Genet Sel Evol. 2013 Jan 02;45:1 - PubMed
  20. Philos Trans R Soc Lond B Biol Sci. 2005 Jul 29;360(1459):1395-409 - PubMed
  21. Genet Sel Evol. 2019 Oct 2;51(1):56 - PubMed
  22. J Anim Breed Genet. 2010 Oct;127(5):339-47 - PubMed
  23. Nat Rev Genet. 2008 Jun;9(6):477-85 - PubMed
  24. Mol Ecol. 2008 Aug;17(15):3428-47 - PubMed
  25. Animal. 2012 Feb;6(2):203-11 - PubMed
  26. Front Genet. 2015 Dec 01;6:337 - PubMed
  27. Int J Biol Sci. 2007 Feb 10;3(3):166-78 - PubMed
  28. Theor Appl Genet. 1968 Jun;38(6):226-31 - PubMed
  29. Genet Sel Evol. 2018 Jun 26;50(1):35 - PubMed
  30. Mol Ecol Resour. 2014 Jan;14(1):209-14 - PubMed
  31. Trop Anim Health Prod. 2020 Jul;52(4):1795-1802 - PubMed
  32. Animals (Basel). 2019 Oct 29;9(11): - PubMed
  33. Genet Mol Biol. 2019 Jan-Mar;42(1):52-61 - PubMed
  34. Sci Rep. 2019 Aug 6;9(1):11380 - PubMed
  35. Genetics. 1971 Aug;68(4):571-80 - PubMed
  36. PLoS One. 2018 Feb 9;13(2):e0192063 - PubMed
  37. Am J Hum Genet. 2007 Sep;81(3):559-75 - PubMed
  38. Nat Genet. 1999 Jun;22(2):139-44 - PubMed
  39. Genetics. 2007 Oct;177(2):1059-70 - PubMed
  40. J Anim Breed Genet. 2012 Aug;129(4):257-70 - PubMed
  41. Genomics Inform. 2016 Dec;14(4):230-233 - PubMed
  42. Front Genet. 2012 Aug 14;3:152 - PubMed

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