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Gauthier J, Mouden C, Suchan T, et al. DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics. PeerJ. 2020;8:e9291doi: 10.7717/peerj.9291.
Gauthier, J., Mouden, C., Suchan, T., Alvarez, N., Arrigo, N., Riou, C., Lemaitre, C., & Peterlongo, P. (2020). DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics. PeerJ, 8e9291. https://doi.org/10.7717/peerj.9291
Gauthier, Jérémy, et al. "DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics." PeerJ vol. 8 (2020): e9291. doi: https://doi.org/10.7717/peerj.9291
Gauthier J, Mouden C, Suchan T, Alvarez N, Arrigo N, Riou C, Lemaitre C, Peterlongo P. DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics. PeerJ. 2020 Jun 10;8:e9291. doi: 10.7717/peerj.9291. eCollection 2020. PMID: 32566401; PMCID: PMC7293188.
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PeerJ. 2020 Jun 10;8:e9291. doi: 10.7717/peerj.9291. eCollection 2020.

DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics.

PeerJ

Jérémy Gauthier, Charlotte Mouden, Tomasz Suchan, Nadir Alvarez, Nils Arrigo, Chloé Riou, Claire Lemaitre, Pierre Peterlongo

Affiliations

  1. Univ. Rennes, Inria, CNRS, IRISA, Rennes, France.
  2. W. Szafer Institute of Botany, Polish Academy of Sciences, Krakow, Poland.
  3. Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
  4. Natural History Museum of Geneva, Geneva, Switzerland.

PMID: 32566401 PMCID: PMC7293188 DOI: 10.7717/peerj.9291

Abstract

Restriction site Associated DNA Sequencing (RAD-Seq) is a technique characterized by the sequencing of specific loci along the genome that is widely employed in the field of evolutionary biology since it allows to exploit variants (mainly Single Nucleotide Polymorphism-SNPs) information from entire populations at a reduced cost. Common RAD dedicated tools, such as

© 2020 Gauthier et al.

Keywords: Deletions; Insertions; RAD-seq; Reference-free; SNPs; Variants

Conflict of interest statement

The authors declare that they have no competing interests.

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