Display options
Share it on

RNA Biol. 2021 Nov;18(11):1778-1790. doi: 10.1080/15476286.2020.1870844. Epub 2021 Jan 15.

Differential transcription profiling of the phage LUZ19 infection process in different growth media.

RNA biology

Ana Brandão, Diana P Pires, Lucas Coppens, Marleen Voet, Rob Lavigne, Joana Azeredo

Affiliations

  1. Centre of Biological Engineering, University of Minho, Braga, Portugal.
  2. Laboratory of Gene Technology, KU Leuven, Leuven, Belgium.

PMID: 33448239 PMCID: PMC8583145 DOI: 10.1080/15476286.2020.1870844

Abstract

RNA sequencing of phage-infected bacterial cultures offers a snapshot of transcriptional events occurring during the infection process, providing insights into the phage transcriptional organization as well as the bacterial response. To better mimic real environmental contexts, we performed RNA-seq of

Keywords: Bacteriophage; P. aeruginosa; RNA-seq; gene expression; transcriptome

References

  1. Am J Physiol Lung Cell Mol Physiol. 2003 May;284(5):L844-54 - PubMed
  2. Bioinformatics. 2014 Apr 1;30(7):923-30 - PubMed
  3. Res Microbiol. 2003 Apr;154(3):207-13 - PubMed
  4. Genome Biol. 2014;15(12):550 - PubMed
  5. ISME J. 2017 Sep;11(9):1988-1996 - PubMed
  6. J Biol Chem. 1998 Sep 25;273(39):25516-26 - PubMed
  7. J Bacteriol. 2004 Jun;186(12):3677-86 - PubMed
  8. Proc Natl Acad Sci U S A. 2017 May 30;114(22):E4324-E4333 - PubMed
  9. Proc Natl Acad Sci U S A. 1993 Oct 1;90(19):9006-10 - PubMed
  10. PLoS One. 2013 Nov 08;8(11):e80252 - PubMed
  11. J Virol. 2014 Sep;88(18):10501-10 - PubMed
  12. J Bacteriol. 2008 Feb;190(4):1429-35 - PubMed
  13. Front Microbiol. 2018 Jul 05;9:1478 - PubMed
  14. J Bacteriol. 2011 Sep;193(17):4307-16 - PubMed
  15. Environ Microbiol. 2016 Feb;18(2):450-60 - PubMed
  16. Science. 1958 Apr 11;127(3302):814-5 - PubMed
  17. Genome Biol. 2009;10(3):R25 - PubMed
  18. Microbiology (Reading). 2018 Feb;164(2):205-216 - PubMed
  19. mSystems. 2019 Apr 16;4(2): - PubMed
  20. Sci Rep. 2019 Mar 6;9(1):3763 - PubMed
  21. Viruses. 2018 Jun 16;10(6): - PubMed
  22. J Bacteriol. 1997 Sep;179(17):5574-81 - PubMed
  23. J Virol. 2015 Aug;89(16):8107-10 - PubMed
  24. Appl Environ Microbiol. 2013 Apr;79(7):2112-20 - PubMed
  25. J Bacteriol. 2003 Apr;185(7):2080-95 - PubMed
  26. Microbiologyopen. 2018 Apr;7(2):e00558 - PubMed
  27. Clin Infect Dis. 2007 Jul 1;45(1):88-94 - PubMed
  28. Front Microbiol. 2016 Sep 26;7:1519 - PubMed
  29. Cell Microbiol. 2010 Dec;12(12):1691-702 - PubMed
  30. PLoS Genet. 2016 Jul 05;12(7):e1006134 - PubMed
  31. Front Microbiol. 2018 Jan 19;9:2 - PubMed
  32. Front Microbiol. 2017 Mar 30;8:548 - PubMed
  33. Sci Rep. 2016 Jan 11;6:19237 - PubMed
  34. J Virol. 2016 Sep 29;90(20):9293-304 - PubMed
  35. J Mol Biol. 2008 Oct 17;382(4):1031-42 - PubMed
  36. Nat Rev Microbiol. 2015 Dec;13(12):777-86 - PubMed
  37. Cell Microbiol. 2014 Dec;16(12):1822-35 - PubMed
  38. Microbiology (Reading). 2018 Apr;164(4):551-562 - PubMed
  39. J Bacteriol. 2002 Jul;184(14):3765-73 - PubMed
  40. J Bacteriol. 2004 Oct;186(20):7015-8 - PubMed
  41. Infect Immun. 2016 Jul 21;84(8):2324-2335 - PubMed
  42. Viruses. 2016 Apr 22;8(4):111 - PubMed
  43. J Bacteriol. 2011 May;193(9):2107-15 - PubMed
  44. J Microbiol Methods. 2009 May;77(2):207-13 - PubMed
  45. Nat Rev Microbiol. 2017 Sep;15(9):517-530 - PubMed
  46. mBio. 2013 Mar 19;4(2):e00061-13 - PubMed

Publication Types