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Mol Omics. 2021 Apr 01;17(2):197-209. doi: 10.1039/d0mo00181c. Epub 2021 Jan 28.

Cleavable linkers and their application in MS-based target identification.

Molecular omics

Hester A Beard, Dimitris Korovesis, Suyuan Chen, Steven H L Verhelst

Affiliations

  1. KU Leuven, Department of Cellular and Molecular Medicine, Laboratory of Chemical Biology, Herestr. 49 box 802, 3000 Leuven, Belgium. [email protected].

PMID: 33507200 DOI: 10.1039/d0mo00181c

Abstract

Covalent chemical probes are important tools in chemical biology. They range from post-translational modification (PTM)-derived metabolic probes, to activity-based probes and photoaffinity labels. Identification of the probe targets is often performed by tandem mass spectrometry-based proteomics methods. In the past fifteen years, cleavable linker technologies have been implemented in these workflows in order to identify probe targets with lower background and higher confidence. In addition, the linkers have enabled identification of modification sites. Overall, this has led to an increased knowledge of PTMs, enzyme function and drug action. This review gives an overview of the different types of cleavable linkers, and their benefits and limitations. Their applicability in target identification is also illustrated by several specific examples.

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