Display options
Share it on

IMA Fungus. 2021 Mar 05;12(1):5. doi: 10.1186/s43008-021-00055-1.

IMA genome - F14 : Draft genome sequences of Penicillium roqueforti, Fusarium sororula, Chrysoporthe puriensis, and Chalaropsis populi.

IMA fungus

Magriet A van der Nest, Renato Chávez, Lieschen De Vos, Tuan A Duong, Carlos Gil-Durán, Maria Alves Ferreira, Frances A Lane, Gloria Levicán, Quentin C Santana, Emma T Steenkamp, Hiroyuki Suzuki, Mario Tello, Jostina R Rakoma, Inmaculada Vaca, Natalia Valdés, P Markus Wilken, Michael J Wingfield, Brenda D Wingfield

Affiliations

  1. Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria, 0028, South Africa.
  2. Biotechnology Platform, Agricultural Research Council, Onderstepoort, Pretoria, 0110, South Africa.
  3. Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Alameda 3363, Estación Central, 9170022, Santiago, Chile. [email protected].
  4. Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria, 0028, South Africa. [email protected].
  5. Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria, 0028, South Africa. [email protected].
  6. Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Alameda 3363, Estación Central, 9170022, Santiago, Chile.
  7. Department of Plant Pathology, Universidade Federal de Lavras/UFLA, Lavras, MG, 37200-000, Brazil.
  8. Departamento de Química, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Ñuñoa, Santiago, Chile.
  9. Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria, 0028, South Africa. [email protected].

PMID: 33673862 PMCID: PMC7934431 DOI: 10.1186/s43008-021-00055-1

Abstract

Draft genomes of Penicillium roqueforti, Fusarium sororula, Chalaropsis populi, and Chrysoporthe puriensis are presented. Penicillium roqueforti is a model fungus for genetics, physiological and metabolic studies, as well as for biotechnological applications. Fusarium sororula and Chrysoporthe puriensis are important tree pathogens, and Chalaropsis populi is a soil-borne root-pathogen. The genome sequences presented here thus contribute towards a better understanding of both the pathogenicity and biotechnological potential of these species.

Keywords: Colombia; Eucalyptus leaf pathogen; Fusarium fujikuroi species complex (FFSC); Pinus tecunumanii

References

  1. Appl Microbiol Biotechnol. 2015 Sep;99(18):7601-12 - PubMed
  2. Mol Biol Evol. 2013 Apr;30(4):772-80 - PubMed
  3. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9 - PubMed
  4. Front Microbiol. 2017 May 05;8:813 - PubMed
  5. Bioinformatics. 2011 Mar 15;27(6):757-63 - PubMed
  6. Front Microbiol. 2017 Dec 06;8:2424 - PubMed
  7. Bioinformatics. 2013 Apr 15;29(8):1072-5 - PubMed
  8. Fungal Biol. 2018 Dec;122(12):1184-1191 - PubMed
  9. Mol Biol Evol. 2018 Jun 1;35(6):1547-1549 - PubMed
  10. Mol Biol Evol. 2000 Apr;17(4):540-52 - PubMed
  11. Nat Methods. 2012 Jul 30;9(8):772 - PubMed
  12. Stud Mycol. 2015 Mar;80:131-50 - PubMed
  13. Int Microbiol. 2009 Jun;12(2):123-9 - PubMed
  14. Bioinformatics. 2008 Mar 1;24(5):637-44 - PubMed
  15. IMA Fungus. 2017 Dec;8(2):385-396 - PubMed
  16. Nat Commun. 2014;5:2876 - PubMed
  17. Microbiol Res. 2019 Sep;226:55-64 - PubMed
  18. Fungal Biol. 2018 Nov;122(11):1031-1040 - PubMed
  19. Bioinformatics. 2014 Aug 1;30(15):2114-20 - PubMed
  20. Bioinformatics. 2014 May 1;30(9):1312-3 - PubMed
  21. Microbiol Res. 2018 Jul - Aug;212-213:67-74 - PubMed
  22. Appl Microbiol Biotechnol. 2017 Aug;101(15):6111-6121 - PubMed
  23. Fungal Genet Biol. 2020 Apr;137:103335 - PubMed
  24. IMA Fungus. 2015 Dec;6(2):493-506 - PubMed
  25. Genome Res. 2017 May;27(5):737-746 - PubMed
  26. Nucleic Acids Res. 1992 Nov 25;20(22):6115-6 - PubMed
  27. Mycologia. 2002 Jan-Feb;94(1):62-72 - PubMed
  28. Bioinformatics. 2015 Oct 1;31(19):3210-2 - PubMed
  29. Genome Res. 2008 Jan;18(1):188-96 - PubMed
  30. Nat Biotechnol. 2019 May;37(5):540-546 - PubMed
  31. Genome Biol Evol. 2016 Dec 31;8(11):3574-3599 - PubMed
  32. PLoS Pathog. 2013;9(6):e1003475 - PubMed
  33. IMA Fungus. 2015 Jun;6(1):233-48 - PubMed
  34. Syst Biol. 2003 Oct;52(5):696-704 - PubMed
  35. Nat Methods. 2012 Mar 04;9(4):357-9 - PubMed
  36. BMC Bioinformatics. 2006 Feb 09;7:62 - PubMed
  37. PLoS One. 2015 Mar 26;10(3):e0120740 - PubMed
  38. Genome Res. 2008 Dec;18(12):1979-90 - PubMed
  39. IMA Fungus. 2018 Jul;9:401-418 - PubMed
  40. J Comput Biol. 2012 May;19(5):455-77 - PubMed
  41. Fungal Genet Biol. 2014 Jan;62:11-24 - PubMed
  42. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W465-7 - PubMed
  43. Genome Biol. 2019 Jun 24;20(1):129 - PubMed
  44. Brief Bioinform. 2019 Jul 19;20(4):1160-1166 - PubMed
  45. Stud Mycol. 2020 Jun 27;95:5-169 - PubMed
  46. Fungal Syst Evol. 2020 Jun;5:39-75 - PubMed
  47. Stud Mycol. 2014 Sep;79:187-219 - PubMed
  48. Fungal Genet Biol. 2018 Apr;113:32-41 - PubMed
  49. Nature. 2010 Mar 18;464(7287):367-73 - PubMed
  50. IMA Fungus. 2018 Jun;9(1):199-223 - PubMed
  51. Syst Biol. 2006 Aug;55(4):539-52 - PubMed
  52. PLoS One. 2016 Jan 11;11(1):e0147047 - PubMed
  53. Nucleic Acids Res. 2004 Mar 19;32(5):1792-7 - PubMed
  54. Genome Biol. 2006;7 Suppl 1:S11.1-8 - PubMed
  55. Syst Biol. 2010 May;59(3):307-21 - PubMed
  56. BMC Evol Biol. 2010 Jan 12;10:8 - PubMed
  57. BMC Bioinformatics. 2004 May 14;5:59 - PubMed
  58. Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87 - PubMed
  59. FEMS Microbiol Lett. 1990 Jan 1;54(1-3):113-7 - PubMed

Publication Types